Quantification of Flavonoid Contents in Holy Basil Using Hyperspectral Imaging and Deep Learning Approaches

Holy basil (<i>Ocimum tenuiflorum</i> L.) is a medicinal herb rich in bioactive flavonoids with therapeutic properties. Traditional quantification methods rely on time-consuming and destructive extraction processes, whereas hyperspectral imaging provides a rapid, non-destructive alternative by analysing spectral signatures. However, effectively linking hyperspectral data to flavonoid levels remains a challenge for developing early detection tools before harvest. This study integrates deep learning with hyperspectral imaging to quantify flavonoid contents in 113 samples from 26 Thai holy basil cultivars collected across diverse regions of Thailand. Two deep learning architectures, ResNet1D and CNN1D, were evaluated in combination with feature extraction techniques, including wavelet transformation and Gabor-like filtering. ResNet1D with wavelet transformation achieved optimal performance, yielding an area under the receiver operating characteristic curve (AUC) of 0.8246 and an accuracy of 0.7702 for flavonoid content classification. Cross-validation demonstrated the model’s robust predictive capability in identifying antioxidant-rich samples. Samples with the highest predicted flavonoid content were identified, and cultivars exhibiting elevated levels of both flavonoids and phenolics were highlighted across various regions of Thailand. These findings demonstrate the predictive capability of hyperspectral data combined with deep learning for phytochemical assessment. This approach offers a valuable tool for non-destructive quality evaluation and supports cultivar selection for higher phytochemical content in breeding programs and agricultural applications.