Identification of a set of SNPs markers for parentage analysis of the mediterranean red coral (Corallium rubrum)
2025
Giordano, Bruna | Daric, Vladimir | Bramanti, Lorenzo | Delcamp, Adline | Guichoux, Erwan | Cannas, Rita | Guizien, Katell | Laboratoire d'Ecogéochimie des environnements benthiques (LECOB) ; Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Observatoire océanologique de Banyuls (OOB) ; Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) | Università degli Studi di Cagliari = University of Cagliari = Université de Cagliari (UniCa) | Biologie intégrative des organismes marins (BIOM) ; Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Observatoire océanologique de Banyuls (OOB) ; Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) | Biodiversité, Gènes & Communautés (BioGeCo) ; Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | This work was funded by the Foundation Prince Albert deMonaco under the project ROMERO (Award No. 3325). B.G. wassupported by a PhD scholarship from the University of Cagliari andCOST Action CA20102 Marine Animal Forests of the World (MAF-WORLD, Short-term scientific mission).
International audience
اظهر المزيد [+] اقل [-]إنجليزي. A set of single nucleotide polymorphism (SNPs) markers was developed from the transcriptome of ten individuals of the Mediterranean red coral (Corallium rubrum). Seven hundred sixty-five putative SNPs, suitable as genetic markers, were identified, and a subset of 320 SNPs was tested using a MassARRAY System on 71 samples. A total of 179 SNPs were successfully genotyped, and 123 of them were polymorphic, with unambiguous signals, and in Hardy-Weinberg equilibrium, showing a significant Linkage Disequilibrium in 20 pairs of SNPs. The newly developed markers will be a useful tool for population genetics and parentage studies of this valuable octocoral.
اظهر المزيد [+] اقل [-]الكلمات المفتاحية الخاصة بالمكنز الزراعي (أجروفوك)
المعلومات البيبليوغرافية
تم تزويد هذا السجل من قبل Institut national de la recherche agronomique