Surface waters could be a dominant route by which antibiotic resistance genes (ARGs) are disseminated. In the present study we explored the prevalence and abundance of ARGs [blaCTX₋M₋₁, erm(B), sul1, tet(B), tet(M), and tet(X)], class 1 integron-integrase gene (intI1), and IncP-1 and IncQ-1 plasmids in eight irrigation return flows (IRFs) and a background site (Main Line Canal, MLC) in the Upper Snake Rock watershed in southern Idaho. Grab samples were collected on a monthly basis for a calendar year, which were processed to extract microbial DNA, followed by droplet digital PCR to quantify the gene copies on an absolute (per 100 mL) and relative (per 16S rRNA gene copies) basis. The antibiotic resistance and intI1 genes and IncP-1/IncQ-1 plasmids were recovered at all IRF sampling sites with detections ranging from 55 to 81 out of 81 water sampling events. The blaCTX₋M₋₁ gene was detected the least frequently (68%), while the other genes were detected more frequently (88–100%). All of the genes were also detected at MLC from April to Oct when water was present in the canal. The genes from lowest to greatest relative abundance in the IRFs were: blaCTX₋M₋₁ < erm(B) < tet(B) < IncQ-1 < tet(M) < sul1 < intI1 = IncP-1 < tet(X). When compared to the average annual relative gene abundances in MLC water samples, they were found to be at statistically greater levels (P ≤ 0.008) except that of the IncP-1 and IncQ-1 plasmids (P = 0.8 and 0.08, respectively). The fact that most IRFs contained higher levels than found in the canal water, indicates that IRFs can be a point source of ARGs that ultimately discharge into surface waters.

Wintertime chemical composition of water–soluble particulate matter with aerodynamic diameter less than 2.5μm (PM2.5) was monitored in the Treasure Valley region near Boise, Idaho. Aerosol was sampled using a Particle Into Liquid Sampler (PILS) and subsequently analyzed using ion exchange chromatography and a total organic carbon analyzer. During the two–month sampling campaign, the region experienced varying meteorological regimes, with an extended atmospheric stagnation event towards the end of the study. For all of the weather regimes, water–soluble PM2.5 was dominated by organic material, but particulate nitrate showed the greatest variation over time. These variations in particulate nitrate concentration were found to be dependent on the time of day, nitrogen oxides (NOX) concentrations, and relative humidity. The increases in particulate nitrate did not correlate with an equivalent molar increase of ammonium concentration, ruling out solid ammonium nitrate formation as the dominant source. Instead, our analysis using an online aerosol thermodynamic model suggests that the condensation of gas phase nitric acid was possible within the meteorological conditions experienced during the study. In running this model, atmospheric chemical and physical parameters close to those observed during the study were used as model input. The simulation was run for three different scenarios, representing the different meteorological regimes experienced during the study. From the simulation particulate nitrate concentration was highest during cold and humid nights. Currently this region is in attainment with the National Ambient Air Quality Standards (NAAQS) for PM2.5; however, with the projected increase in population and economic growth, and the subsequent increase in NOX emissions, these episodic increases in particulate nitrate have the potential of pushing the area to non–attainment status.

Water hardness is well known to affect the toxicity of some metals; however, reports on the influence of hardness during incubation or acclimation on later toxicity to metals have been conflicting. We incubated rainbow trout (Oncorhynchus mykiss) near the confluence of two streams, one with soft water and one with very-soft water (average incubation hardnesses of about 21 and 11 mg/L as CaCO₃, respectively). After developing to the swim-up stage, the fish were exposed for 96-h to a mixture of cadmium (Cd) and zinc (Zn) in water with a hardness of 27 mg/L as CaCO₃. The fish incubated in the higher hardness water were about two times more resistant than the fish incubated in the extremely soft water. This difference was similar or greater than the difference that would have been predicted by criteria hardness equations had the fish been tested in the different acclimation waters. We think it is plausible that the energy demands for fish to maintain homeostasis in the lower hardness water make the fish more sensitive to metals that inhibit ionoregulation such as Cd and Zn. We suggest that if important decisions were to be based upon test results, assumptions of adequate hardness acclimation should be carefully considered and short acclimation periods avoided. If practical, incubating rainbow trout in the control waters to be tested may reduce uncertainties in the possible influences of differing rearing water hardness on the test results.

In order to estimate acute-to-chronic toxicity ratios (ACRs) relevant to a coldwater stream community, we exposed rainbow trout (Oncorhynchus mykiss) to cadmium (Cd), lead (Pb), and zinc (Zn) in 96-h acute and 60+ day early-life stage (ELS) exposures. We also tested the acute and sublethal responses of a mayfly (Baetis tricaudatus) and a midge (Chironomus dilutus, formerly C. tentans) with Pb. We examine the statistical interpretation of test endpoints and the acute-to-chronic ratio concept. Increasing the number of control replicates by 2 to 3x decreased the minimum detectable differences by almost half. Pb ACR estimates mostly increased with increasing acute resistance of the organisms (rainbow trout ACRs <[almost equal to] mayfly < Chironomus). The choice of test endpoint and statistical analysis influenced ACR estimates by up to a factor of four. When calculated using the geometric means of the no- and lowest-observed effect concentrations, ACRs with rainbow trout and Cd were 0.6 and 0.95; Zn about 1.0; and for Pb 3.3 and 11. The comparable Pb ACRs for the mayfly and Chironomus were 5.2 and 51 respectively. Our rainbow trout ACRs with Pb were about 5-20x lower than earlier reports with salmonids. We suggest discounting previous ACR results that used larger and older fish in their acute tests.

We tested how ecosystem structure (macroinvertebrate community and primary producers) and functions (leaf decay and open-water metabolism) are related to water quality in the Portneuf River, southeast Idaho. This river is polluted with excess nutrients and fine sediment and simultaneously demonstrates a range of hydrologic conditions due to a variety of groundwater and spring inputs. Macroinvertebrate abundance, functional feeding group composition, and diversity responded most to hydrology due to affinity of the invasive New Zealand mudsnail for spring-influenced conditions. Macrophytes were most abundant at spring-influenced sites, while benthic periphyton standing crop was highest at sites with highest nutrient concentrations. Leaf decay rates increased by 50% at spring-influenced sites and showed no response to 3-100-fold differences in nutrient concentrations. Finally, primary production measured via open-water metabolism was highest at spring-influenced sites, which tended to have low turbidity. Community respiration, however, was greatest at the site with the highest nutrient concentrations. Therefore, open-water metabolism was a useful indicator of water quality in this nutrient-polluted river, while invertebrate community structure and leaf decay did not reflect large differences in water quality among sites. Our findings suggest that structure and function metrics provide complementary information on biotic responses to water pollution and that these metrics should be used in concert to more fully understand and monitor biotic responses to water pollution and hydrologic alterations in streams and rivers.