We investigated the environmental impact of a deep water fish farm (190 m). Despite deep water and low water currents, sediments underneath the farm were heavily enriched with organic matter, resulting in stimulated biogeochemical cycling. During the first 7 months of the production cycle benthic fluxes were stimulated >29 times for CO₂ and O₂ and >2000 times for NH₄ ⁺, when compared to the reference site. During the final 11 months, however, benthic fluxes decreased despite increasing sedimentation. Investigations of microbial mineralization revealed that the sediment metabolic capacity was exceeded, which resulted in inhibited microbial mineralization due to negative feed-backs from accumulation of various solutes in pore water. Conclusions are that (1) deep water sediments at 8 °C can metabolize fish farm waste corresponding to 407 and 29 mmol m⁻² d⁻¹ POC and TN, respectively, and (2) siting fish farms at deep water sites is not a universal solution for reducing benthic impacts.

Soil suspensions (slurries) are commonly used to estimate the potential of soil microbial communities to mineralize organic contaminants. The preparation of soil slurries disrupts soil structure, however, potentially affecting both the bacterial populations and their protozoan predators. We studied the importance of this “slurry effect” on mineralization of the herbicide 2-methyl-4-chlorophenoxyacetic acid (MCPA, ¹⁴C-labelled), focussing on the effects of protozoan predation. Mineralization of MCPA was studied in “intact” soil and soil slurries differing in soil:water ratio, both in the presence and absence of the protozoan activity inhibitor cycloheximide. Protozoan predation inhibited mineralization in dense slurry of subsoil (soil:water ratio 1:3), but only in the most dilute slurry of topsoil (soil:water ratio 1:100). Our results demonstrate that protozoan predation in soil slurries may compromise quantification of contaminant mineralization potential, especially when the initial density of degrader bacteria is low and their growth is controlled by predation during the incubation period.

Hydrochemical sampling of South Pennine (UK) headwater streams draining eroded upland peatlands demonstrates these systems are nitrogen saturated, with significant leaching of dissolved inorganic nitrogen (DIN), particularly ammonium, during both stormflow and baseflow conditions. DIN leaching at sub-catchment scale is controlled by geomorphological context; in catchments with low gully densities ammonium leaching dominates whereas highly gullied catchments leach ammonium and nitrate since lower water tables and increased aeration encourages nitrification. Stormflow flux calculations indicate that: approximately equivalent amounts of nitrate are deposited and exported; ammonium export significantly exceeds atmospheric inputs. This suggests two ammonium sources: high atmospheric loadings; and mineralisation of organic nitrogen stored in peat. Downstream trends indicate rapid transformation of leached ammonium into nitrate. It is important that low-order headwater streams are adequately considered when assessing impacts of atmospheric loads on the hydrochemistry of stream networks, especially with respect to erosion, climate change and reduced precipitation.

Mechanistic insights into the relative contribution of sorption and biodegradation on the removal of the herbicide isoproturon (IPU) are reported. ¹⁴C-radiorespirometry indicated very low levels of catabolic activity in IPU-undosed and IPU-dosed (0.1, 1, 100 μg L⁻¹) river water (RW) and groundwater (GW) (mineralisation: <2%). In contrast, levels of catabolic activity in IPU-undosed and IPU-dosed river sediment (RS) were significantly higher (mineralisation: 14.5–36.9%). Levels of IPU catabolic competence showed a positive log-linear relationship (r² = 0.768) with IPU concentration present. A threshold IPU concentration of between 0.1 μg L⁻¹ and 1 μg L⁻¹ was required to significantly (p < 0.05) increase levels of catabolic activity. Given the EU Drinking Water Directive limit for a single pesticide in drinking water of <0.1 μg L⁻¹ this result suggests that riverbed sediment infiltration is potentially an appropriate ‘natural’ means of improving water quality in terms of pesticide levels at concentrations that are in keeping with regulatory limits.

The efficiency of the photocatalytic degradation of the herbicide quinmerac in aqueous TiO2 suspensions was examined as a function of the type of light source, TiO2 loading, pH, temperature, electron acceptors, and hydroxyl radical (.OH) scavenger. The optimum loading of catalyst was found to be 0.25 mg mL−1 under UV light at pH 7.2, with the apparent activation energy of the reaction being 13.7 kJ mol−1. In the first stage of the reaction, the photocatalytic degradation of quinmerac (50 μM) followed approximately a pseudo-first order kinetics. The most efficient electron acceptor appeared to be H2O2 along with molecular oxygen. By studying the effect of ethanol as an .OH scavenger, it was shown that the heterogeneous catalysis takes place mainly via .OH. The results also showed that the disappearance of quinmerac led to the formation of a number of organic intermediates and ionic byproducts, whereas its complete mineralization occurred in about 120 min. The reaction intermediates (7-chloro-3-methylquinoline-5,8-dione, three isomeric phenols hydroxy-7-chloro-3-methylquinoline-8-carboxylic acids, and 7-chloro-3-(hydroxymethyl)quinoline-8-carboxylic acid) were identified and the kinetics of their appearance/disappearance was followed by LC–ESI–MS/MS. Tentative photodegradation pathways were proposed and discussed. The study also encompassed the effect of quality of natural water on the rate of removal of quinmerac.

The photocatalytic degradation of dyes under sunlight irradiation has received much attention not only because the attempt is aimed at decomposition of pollutants but also at finding methods of making use of solar energy. Following this line, zinc oxide nano-particles were prepared using solvent thermal method in order to decompose Naphthol Green B in presence of sunlight. Complete mineralization and decolorization of Naphthol Green B were achieved in 14 h. In order to reduce the band gap of zinc oxide and increase its photocatalytic activity in sunlight, it was doped with different concentrations of aluminum (1 %, 3 %, 5 %, and 10 %). The obtained band gap energy of the Al-doped ZnO nanoparticles was investigated as a function of Al content. Reduction of band gap energy for the heavily doped ZnO nanoparticles (10 % Al) was observed from 3.29 to 3.23 eV leading to fast transfer for electron from the excited state of dye to conduction band of ZnO. Therefore, by using the 10 % Al-doped ZnO nanoparticles, the complete mineralization and decolorization of Naphthol Green B were achieved in 6 h under sunlight. These results suggested that the heavily doped ZnO nanoparticles with aluminum has a positive effect towards photocatalytic reactions with dye under solar energy.

Marine waters are most vulnerable to crude oil pollution due to increased sea-based oil-related activities. Successful remediation of such polluted environments is normally carried out in a laboratory with suitable physical and environmental alterations. However, it is challenging to alter the physical and environmental conditions in crude oil-contaminated natural environments. In a previous study, six hydrocarbonoclastic bacteria were isolated from an oil-contaminated site. Here we report on their ability to mineralise weathered crude oil as a carbon source in seawater mesocosms, in order to construct a hydrocarbonoclastic consortia for the effective mineralisation of hydrocarbons present in the weathered crude oil at seawater-based environment. This was completed without altering the physical and environmental parameters (salinity, pH and temperature) and followed by the detection of microbial community changes. The total amount of oil mineralised by these six isolates individually over 28-day incubation ranged from 4.7 to 10 %. The bacterial consortia composed of these six strains showed a greater mineralisation rate (18.5 %). Temperature gradient gel electrophoresis revealed that the functionally dominant species were present after the first week (week 2 to week 4) following the addition of the consortia, which were represented in dendrogram by cluster 2 and also these weeks representing a distinct point on the Pareto–Lorenz curve; no community could be identified in controls in which no consortia were added. This shows that the addition of consortia potentially dealt with changing environmental conditions and preserved its functionality followed by effective mineralisation of weathered crude oil.

Fluorescence in situ hybridization (FISH) technique and qPCR analyses, targeting atz genes, were applied to detect the presence of simazine-degrading bacteria in an agricultural soil with a history of herbicide application. atzB-targeted bacteria detected by FISH represented 5% of total soil bacteria with potential capability to metabolize the herbicide. The soil natural attenuation capacity was confirmed in soil microcosms by measuring simazine degradation. Moreover, four bacterial strains were isolated from the soil and identified as Acinetobacter lwoffii, Pseudomonas putida, Rhizobium sp. and Pseudomonas sp. The isolates were able to grow using different s-triazine compounds and related metabolites as the sole carbon source. Growth parameters in presence of simazine were calculated using the Gompertz model. Rhizobium sp. showed the highest simazine degradation (71.2%) and mineralization (38.7%) rates, whereas the lowest values were found to A. lwoffii—50.4% of degradation and 22.4% of mineralization. Results from qPCR analyses of atzA, atzB and atzC genes revealed their presence in Rhizobium sp. and A. lwoffii, being atzB and atzC the most abundant functional genes. Rhizobium sp. showed a higher amount of the three biomarkers compared to A. lwoffii: the atzA, atzB and atzC gene copy number per microlitre were, respectively, 101, 102 and 103-fold higher in the former. Therefore the proposed molecular approaches based on the use of atz genes as biomarkers can be considered as useful tools to evaluate the presence and potential capability of degrading-s-triazines soil microorganisms.

The complete mineralization of the conazole fungicide triadimefon in water at pH 3 using electrochemical advanced oxidation processes, electro-Fenton and photo electro-Fenton, was achieved. The electrochemical system consisted of a one-compartment electrochemical cell of 100 mL provided with a glassy carbon mesh electrode (cathode) and a concentric outer steel mesh as anode. The electrolysis was realized at constant current. The most remarkable features are as follows: (1) photo electro-Fenton process reaches a complete mineralization of triadimefon after 2 h of electrolysis with respect to electro-Fenton method; and (2) 4-chlorophenol, hydroquinone, carboxylic acids, and inorganic ions were detected as intermediates of degradation processes, which end with the complete mineralization of triadimefon to CO₂ + H₂O. (3) A reaction pathway for the oxidation of triadimefon fungicide by hydroxyl radicals that accounts for almost all detected intermediates is proposed.

The presence of synthetic dyes in industrial wastewaters may create serious environmental problems due to their mutagenicity and toxicity to aquatic life and humans. In this study, the decolourization and degradation of methylene blue (MB) by a Sphingomonas paucimobilis strain isolated from industrial wastewater was investigated under aerobic conditions. Decolourization extent of MB in medium was over 85 % when the bacterium was grown on a high concentration of the dye (1,000 mg/L) after a retention time of 5 days, while reduction in COD was 92.99 % suggesting mineralization of dyes as a result of microbial activities. The bacterium retained decolourizing activity over a wide range of pH (2–10), with peak activity obtained at pH 9. Analysis of samples extracted from decolourized culture flasks at pH 9 using UV–visible and Fourier transform infrared (FTIR) spectroscopy confirmed that the mechanism of colour removal was due to biodegradation rather than adsorption of dye on cells. Scanning and transmission electron microscopy revealed the secretion of exopolysaccharides (EPS) by S. paucimobilis cells on exposure to MB—a probable physiological defence mechanism to ensure controlled diffusion of dye molecules into cellular structures. Biokinetic coefficients, namely, growth yield, Y; specific biomass decay, K d; maximum specific substrate rate, k; saturation constant for substrate, K ₛ; and maximum specific biomass growth rate, μ ₘₐₓ, were determined by the Monod type kinetic equation. Results indicate that S. paucimobilis holds a promise as a good candidate for the biological treatment of industrial effluent containing high concentrations of synthetic dyes.