Two birch clones originating from metal-contaminated sites were exposed for 3 months to soils (sand-peat ratio 1:1 or 4:1) spiked with a mixture of polyaromatic hydrocarbons (PAHs; anthracene, fluoranthene, phenanthrene, pyrene). PAH degradation differed between the two birch clones and also by the soil type. The statistically most significant elimination (p <= 0.01), i.e. 88% of total PAHs, was observed in the more sandy soil planted with birch, the clearest positive effect being found with Betula pubescens clone on phenanthrene. PAHs and soil composition had rather small effects on birch protein complement. Three proteins with clonal differences were identified: ferritin-like protein, auxin-induced protein and peroxidase. Differences in planted and non-planted soils were detected in bacterial communities by 16S rRNA T-RFLP, and the overall bacterial community structures were diverse. Even though both represent complex systems, trees and rhizoidal microbes in combination can provide interesting possibilities for bioremediation of PAH-polluted soils. Birch can enhance degradation of PAH compounds in the rhizosphere.

A 2-year open-top chamber experiment with field-grown winter wheat (Triticum aestivum L. cv. Astron) was conducted to examine the effects of ozone on plant growth and selected groups of soil mesofauna in the rhizosphere. From May through June in each year, plants were exposed to two levels of O3: non-filtered (NF) ambient air or NF+ 40 ppb O3 (NF+). During O3 exposure, soil sampling was performed at two dates according to different plant growth stages. O3 exposure reduced above- and below-ground plant biomass in the first year, but had little effect in the second year. The individual density of enchytraeids, collembolans and soil mites decreased significantly in the rhizosphere of plants exposed to NF+ in both years. Differences were highest around anthesis, i.e. when plants are physiologically most active. The results suggest that elevated O3 concentrations may influence the dynamic of decomposition processes and the turnover of nutrients. Ozone reduced the individual densities of enchytraeids, collembolans and soil mites in the rhizosphere of winter wheat indirectly via the plant–soil-system.

We evaluated how root-induced changes in rhizosphere pH varied and interacted with Cu availability and bioavailability in an acidic soil. Rape was grown on a Cu-contaminated acidic soil, which had been limed at 10 rates. Soil Cu bioavailability was not influenced by liming. However, liming significantly decreased CaCl2–extracted Cu for pH between 3.7 and 5.1. Little effect was found for pH above 5.1. For soil pH < 4.4, CaCl2–Cu contents were smaller in rhizosphere than uncropped soil. Rhizosphere alkalisation occurred at pH < 4.8, while acidification occurred at greater pH. This explained the changes of CaCl2–Cu in the rhizosphere at low pH and the absence of pH dependency of Cu bioavailability to rape. In addition, apoplastic Cu in roots increased with increasing soil pH, most probably as a result of increased dissociation and affinity of cell wall compounds for Cu. Root-induced increase in pH reduces Cu availability in the rhizosphere and Cu bioavailability to rape.

For phytoremediation of organic contaminants, plants have to host an efficiently degrading microflora. To assess the role of endophytes in alkane degradation, Italian ryegrass was grown in sterile soil with 0, 1 or 2% diesel and inoculated either with an alkane degrading bacterial strain originally derived from the rhizosphere of Italian ryegrass or with an endophyte. We studied plant colonization of these strains as well as the abundance and expression of alkane monooxygenase (alkB) genes in the rhizosphere, shoot and root interior. Results showed that the endophyte strain better colonized the plant, particularly the plant interior, and also showed higher expression of alkB genes suggesting a more efficient degradation of the pollutant. Furthermore, plants inoculated with the endophyte were better able to grow in the presence of diesel. The rhizosphere strain colonized primarily the rhizosphere and showed low alkB gene expression in the plant interior. Bacterial alkane degradation genes are expressed in the rhizosphere and in the plant interior.

Soils in areas of mining and smelting of Pb-Zn ores in Southern Poland are strongly enriched in heavy metals (Zn, Pb, Fe, Cd, Tl, As). The highest concentrations of Zn (<55,506 mg kg⁻¹), Pb (<8,262 mg kg⁻¹), Cd (<220 mg kg⁻¹) and Tl (<67 mg kg⁻¹) are linked to the fine fractions of upper soil layers in sites contaminated by past exploitation and processing of ores. The high stress of metals, and the negative influence of acid waste drainage has limited the development of flora and fauna in these areas. The increasing ability of plants to grow is due to the positive symbiotic action of fungi and bacteria. The mycorrhizal communities were identified in rhizospheres rich in unstable Zn-Pb-Fe sulphides such as sphalerite, galena, pyrite and marcasite and carbonates of Zn (smithsonite) and Pb (cerussite). They occur in associations with sulphates, e.g., gypsum. In parts of fungi, secondary mineral phases containing Zn, Pb, Fe and Mn occur. Metal-bearing aggregates formed during symbiotic action between myccorhiza and bacteria connected with them. They enhance the binding of bio-available ions of Zn, Pb and Mn in the most unstable phases. Metal contents in the mycorrhizal parts of the rhizospheric soils were determined by Atomic Absorption Spectroscopy. Mineralogical investigations involved X-ray diffraction, scanning electron microscopy with energy dispersive spectrometry.

Chemical processes in the rhizosphere play a major role in the availability of metals to plants. The objective of this study was to assess the potential of white lupin (Lupinus albus L.) for the phytoimmobilisation of heavy metals in a calcareous soil with high levels of Zn and Pb (2,058 and 2,947 μg g⁻¹, respectively) by evaluating the chemical changes in the rhizosphere, relative to bulk soil, which modify the solubility of heavy metals. Plants were cultivated for 74 days in specially designed pots (rhizopots) in which rhizosphere was sampled easily under controlled conditions. White lupin accumulated high concentrations of Mn in the shoots (average of 4,960 μg g⁻¹), well above the normal concentration in plants (300 μg g⁻¹). But the metal concentrations found in shoots were not at toxic levels. Rhizosphere soil showed a significantly greater redox potential (245 mV) and water-soluble organic carbon content (34.6 μg C g⁻¹) than bulk soil (227 mV; 27.6 μg C g⁻¹). Root activity decreased EDTA-extractable Pb, Zn and Fe and promoted their precipitation as insoluble compounds in the residual fraction (acid digestion), hardly available to plants. These results indicate the suitability of this annual N₂-fixing species for the initial phytoimmobilisation of heavy metals in contaminated soils.

This study was initiated to explore the effects of ozone (O₃) exposure on potted wheat roots and soil microbial community function. Three treatments were performed: (1) Air with daily averaged O₃ concentration of 4-10 ppb (control situation, CK), (2) Air plus 8 h averaged O₃ concentration of 76.1 ppb (O₃-1), and (3) Air plus 8 h averaged O₃ concentration of 118.8 ppb (O₃-2). In treatments with elevated O₃ concentration (O₃-1 and O₃-2), the root and shoot biomass were reduced by 25% and 18%, respectively, compared to the control treatment (CK). On the other hand, root activity was significantly reduced by 58% and 90.8% in the O₃-1 and O₃-2 treatments, respectively, compared to CK. The soil microbial biomass was significantly reduced only in the highest O₃ concentration (O₃-2 treatment) in the rhizosphere soil. Soil microbial community composition was assessed under O₃ stress based on the changes in the sole carbon source utilization profiles of soil microbial communities using the Biolog[trade mark sign] system. Principal component analysis showed that there was significant discrimination in the sole-carbon source utilization pattern of soil microbial communities among the O₃ treatments in rhizosphere soil; however, there was none in the bulk soil. In rhizosphere soil, the functional richness of the soil microbial community was reduced by 27% and 38% in O₃-1 and O₃-2 treatments, respectively, compared to CK. O₃-2 treatment remarkably decreased the Shannon diversity index of soil microbial community function in rhizosphere soil, but the O₃-1 treatment did not. In the dominant microorganisms using carbon sources of carbohydrates and amino acids groups were significantly reduced by an elevated O₃ concentration in the rhizosphere soil. Our study shows that the elevated ozone levels may alter microbial community function in rhizosphere soil but not in the bulk soil. Hence, this suggests that O₃ effects on soil microbes are caused by O₃ detriments on the plant, but not by the O₃ direct effects on the soil microbes.

Commonly occurring plant species on metal-contaminated soils and noncontaminated soils adjoining Kanpur Tanneries, Uttar Pradesh, India were surveyed for arbuscular mycorrhizal association. In the present study, pH, electric conductivity (E.C.), organic carbon, macronutrients (available phosphorus, available potassium), micronutrients (Cu and Zn), and toxic metals (Cr, Cd, Pb) were higher in metal-contaminated site compared to noncontaminated site. These factors were also significantly different between metal-contaminated and noncontaminated soils. High E.C. along with toxic concentrations of metals like Cr, Cd, and Pb may have acted as selection pressure for vegetation cover, making the metal-contaminated site hostile for cultivation purpose. The study recorded Arum type of arbuscular mycorrhiza. The highest mean total root colonization levels in metal-contaminated and noncontaminated soils were 100% (Parthenium sp.) and 34.16% (Parthenium sp.), respectively. Maximum mean spore density in metal-contaminated and noncontaminated soils was 19 spores rhizosphere soil⁻¹ (Parthenium sp.) and nine spores rhizosphere soil⁻¹ (Desmostachya bipinnata and Cynodon sp.), respectively. Studies revealed that for a particular plant species, the root colonization levels and spore density (except Cynodon sp.) were higher in contaminated soil compared to noncontaminated soils. A total of six species of arbuscular mycorrhizal fungi belonging to two genera viz., Glomus and Scutellospora were recovered during the study. Species richness of arbuscular mycorrhizal fungi was maximum in the noncontaminated site compared to the metal-contaminated site. This result suggests that continuous exposure of plants and associated arbuscular mycorrhizal fungi to heavy metals can result in tolerant species which can be used for phytoremediation.

Background, aim, and scope The use of plants and associated microorganisms to remove, contain, inactivate, or degrade harmful environmental contaminants (generally termed phytoremediation) and to revitalize contaminated sites is gaining more and more attention. In this review, prerequisites for a successful remediation will be discussed. The performance of phytoremediation as an environmental remediation technology indeed depends on several factors including the extent of soil contamination, the availability and accessibility of contaminants for rhizosphere microorganisms and uptake into roots (bioavailability), and the ability of the plant and its associated microorganisms to intercept, absorb, accumulate, and/or degrade the contaminants. The main aim is to provide an overview of existing field experience in Europe concerning the use of plants and their associated microorganisms whether or not combined with amendments for the revitalization or remediation of contaminated soils and undeep groundwater. Contaminations with trace elements (except radionuclides) and organics will be considered. Because remediation with transgenic organisms is largely untested in the field, this topic is not covered in this review. Brief attention will be paid to the economical aspects, use, and processing of the biomass. Conclusions and perspectives It is clear that in spite of a growing public and commercial interest and the success of several pilot studies and field scale applications more fundamental research still is needed to better exploit the metabolic diversity of the plants themselves, but also to better understand the complex interactions between contaminants, soil, plant roots, and microorganisms (bacteria and mycorrhiza) in the rhizosphere. Further, more data are still needed to quantify the underlying economics, as a support for public acceptance and last but not least to convince policy makers and stakeholders (who are not very familiar with such techniques).

Background, aim, and scope Along transects under a mixed woodland of English Oak (Quercus robur) and Common Ash (Fraxinus excelsior) growing on a trichloroethylene (TCE)-contaminated groundwater plume, sharp decreases in TCE concentrations were observed, while transects outside the planted area did not show this remarkable decrease. This suggested a possibly active role of the trees and their associated bacteria in the remediation process. Therefore, the cultivable bacterial communities associated with both tree species growing on this TCE-contaminated groundwater plume were investigated in order to assess the possibilities and practical aspects of using these common native tree species and their associated bacteria for phytoremediation. In this study, only the cultivable bacteria were characterized because the final aim was to isolate TCE-degrading, heavy metal resistant bacteria that might be used as traceable inocula to enhance bioremediation. Materials and methods Cultivable bacteria isolated from bulk soil, rhizosphere, root, stem, and leaf were genotypically characterized by amplified rDNA restriction analysis (ARDRA) of their 16S rRNA gene and identified by 16S rRNA gene sequencing. Bacteria that displayed distinct ARDRA patterns were screened for heavy metal resistance, as well as TCE tolerance and degradation, as preparation for possible future in situ inoculation experiments. Furthermore, in situ evapotranspiration measurements were performed to investigate if the degradation capacity of the associated bacteria is enough to prevent TCE evapotranspiration to the air. Results and discussion Between both tree species, the associated populations of cultivable bacteria clearly differed in composition. In English Oak, more species-specific, most likely obligate endophytes were found. The majority of the isolated bacteria showed increased tolerance to TCE, and TCE degradation capacity was observed in some of the strains. However, in situ evapotranspiration measurements revealed that a significant amount of TCE and its metabolites was evaporating through the leaves to the atmosphere. Conclusions and perspectives The characterization of the isolates obtained in this study shows that the bacterial community associated with Oak and Ash on a TCE-contaminated site, was strongly enriched with TCE-tolerant strains. However, this was not sufficient to degrade all TCE before it reaches the leaves. A possible strategy to overcome this evapotranspiration to the atmosphere is to enrich the plant-associated TCE-degrading bacteria by in situ inoculation with endophytic strains capable of degrading TCE.