The widespread use of antibiotics in aquaculture can potentially lead to the emergence of antibiotic resistance genes (ARGs) and threaten human health by entering the food chain. To assess the environmental risk posed by antibiotics in China, the spatial-temporal distribution and correlation of 8 antibiotics based on the abundance of 11 ARGs in water sources, pond water, and sediment in 8 ponds were determined. The results indicated that sul1 was the predominant ARG in water sources and pond water, and tetC was the most in the sediment. A trend of increasing abundance of ARGs was observed with increased rearing density and pond age. Compared to monoculture, shrimp culture integrated with different trophic levels of fish farming could influence the abundance of ARGs. There was also a significant correlation between the abundance of ARGs and antibiotic concentration in the sediment, while no correlation was observed in water sources and pond water.

A 3D ecosystem model was used to quantify changes in water quality brought about by salmon aquaculture in the D'Entrecasteaux Channel and Huon Estuary in southeast Tasmania. Macroalgae-based integrated multitrophic aquaculture (IMTA) was simulated and showed that IMTA is capable of reducing the increased chlorophyll concentration attributable to fish farming by up to 10–15% in large areas of the region, during the season of highest production. Kelp farms (Macrocystis pyrifera) recovered between 6 and 11% of the dissolved inorganic nitrogen (DIN) input by salmon aquaculture over a nine month period, with DIN remediation increasing linearly with farm size. Under a ten-fold increase in aquaculture to very high loads, a much lower remediation effect was found for both chlorophyll and DIN. Model results indicate that IMTA could have an important impact on reducing negative effects of finfish aquaculture on water quality providing that stocking rates are not too high.

We investigated differences in the feeding habits of the starspotted smooth-hound, Mustelus manazo, in Tokyo Bay between the mid-1990s (low stock size) and the late 2000s (high stock size). The frequency of M. manazo with empty stomachs increased from 5.9% in the mid-1990s to 16.1% in the late 2000s. A decrease in the relative weight of the stomach contents was evident from the mid-1990s to the late 2000s, especially in the small size classes, along with changes in the species composition in the stomach contents. Although crustaceans were the main constituents of the stomach contents, the proportion of crabs increased while those of shrimps and hermit crabs decreased. Changes in the feeding habits of M. manazo may be associated with shifts in the benthic community structure in Tokyo Bay.

Climate Change solutions include CO₂ extraction from atmosphere and water with burial by living habitats in sediment/soil. Nowhere on the planet are blue carbon plants which carry out massive carbon extraction and permanent burial more intensely concentrated than in SE Asia. For the first time we make a national and total inventory of data to date for “blue carbon” buried from mangroves and seagrass and delineate the constraints. For an area across Southeast Asia of approximately 12,000,000 km², supporting mangrove forests (5,116,032 ha) and seagrass meadows (6,744,529 ha), we analyzed the region's current blue carbon stocks. This estimate was achieved by integrating the sum of estuarine in situ carbon stock measurements with the extent of mangroves and seagrass across each nation, then summed for the region. We found that mangroves ecosystems regionally supported the greater amount of organic carbon (3095.19Tg Cₒᵣg in 1st meter) over that of seagrass (1683.97 Tg Cₒᵣg in 1st meter), with corresponding stock densities ranging from 15 to 2205 Mg ha⁻¹ and 31.3 to 2450 Mg ha⁻¹ respectively, a likely underestimate for entire carbon including sediment depths. The largest carbon stocks are found within Indonesia, followed by the Philippines, Papua New Guinea, Myanmar, Malaysia, Thailand, Tropical China, Viet-Nam, and Cambodia. Compared to the blue carbon hotspot of tropical/subtropical Gulf of Mexico's total carbon stock (480.48 Tg Corg), Southeast Asia's greater mangrove–seagrass stock density appears a more intense Blue Carbon hotspot (4778.66 Tg Corg). All regional Southeast Asian nation states should assist in superior preservation and habitat restoration plus similar measures in the USA & Mexico for the Gulf of Mexico, as apparently these form two of the largest tropical carbon sinks within coastal waters. We hypothesize it is SE Asia's regionally unique oceanic–geologic conditions, placed squarely within the tropics, which are largely responsible for this blue carbon hotspot, that is, consistently high ambient light levels and year-long warm temperatures, together with consistently strong inflow of dissolved carbon dioxide and upwelling of nutrients across the shallow geological plates.

With increasing concern over the aquatic environment in marine culture, the integrated multi-trophic aquaculture (IMTA) has received extensive attention in recent years. A three-dimensional numerical ocean model is developed to explore the negative impacts of aquaculture wastes and assess the bio-mitigation effect of IMTA systems on marine environments. Numerical results showed that the concentration of surface phytoplankton could be controlled by planting seaweed (a maximum reduction of 30%), and the percentage change in the improvement of bottom dissolved oxygen concentration increased to 35% at maximum due to the ingestion of organic wastes by sea cucumbers. Numerical simulations indicate that seaweeds need to be harvested in a timely manner for maximal absorption of nutrients, and the initial stocking density of sea cucumbers >3.9 individuals m−2 is preferred to further eliminate the organic wastes sinking down to the sea bottom.

Vermicomposting is a bio-oxidative process that involves the action of mainly epigeic earthworm species and different micro-organisms to accelerate the biodegradation and stabilization of organic materials. There has been a growing realization that the process of vermicomposting can be used to greatly improve the fertilizer value of different organic materials, thus, creating an opportunity for their enhanced use as organic fertilizers in agriculture. The link between earthworms and micro-organisms creates a window of opportunity to optimize the vermi-degradation process for effective waste biodegradation, stabilization, and nutrient mineralization. In this review, we look at up-to-date research work that has been done on vermicomposting with the intention of highlighting research gaps on how further research can optimize vermi-degradation. Though several researchers have studied the vermicomposting process, critical parameters that drive this earthworm–microbe-driven process which are C/N and C/P ratios; substrate biodegradation fraction, earthworm species, and stocking density have yet to be adequately optimized. This review highlights that optimizing the vermicomposting process of composts amended with nutrient-rich inorganic materials such as fly ash and rock phosphate and inoculated with microbial inoculants can enable the development of commercially acceptable organic fertilizers, thus, improving their utilization in agriculture.

Grazing can accelerate and alter the timing of nutrient transfer, and could increase the amount of extractable phosphorus (P) cycle from soils to plants. The effects of grazing management and/or forage type that control P cycling and distribution in pasture's resources have not been sufficiently evaluated. Our ability to estimate the levels and changes of soil-extractable P and other crop nutrients in subtropical beef cattle pastures has the potential to improve our understanding of P dynamics and nutrient cycling at the landscape level. To date, very little attention has been paid to evaluating transfers of extractable P in pasture with varying grazing management and different forage type. Whether or not P losses from grazed pastures are significantly greater than background losses and how these losses are affected by soil, forage management, or stocking density are not well understood. The objective of this study was to evaluate the effect of grazing management (rotational versus “zero” grazing) and forage types (FT; bahiagrass, Paspalum notatum, Flugge versus rhizoma peanuts, Arachis glabrata, Benth) on the levels of extractable soil P and degree of P saturation in beef cattle pastures. This study (2004–2007) was conducted at the Subtropical Agricultural Research Station, US Department of Agriculture–Agricultural Research Service located 7 miles north of Brooksville, FL. Soil (Candler fine sand) at this location was described as well-drained hyperthermic uncoated Typic Quartzipsamments. A split plot arrangement in a completely randomized block design was used and each treatment was replicated four times. The main plot was represented by grazing management (grazing vs. no grazing) while forage types (bahiagrass vs. perennial peanut) as the sub-plot treatment. Eight steel exclosures (10 × 10 m) were used in the study. Four exclosures were placed and established in four pastures with bahiagrass and four exclosures were established in four pastures with rhizoma peanuts to represent the “zero” grazing treatment. The levels of soil-extractable P and degree of P saturation (averaged across FT and soil depth) of 22.1 mg kg⁻¹and 11.6 % in pastures with zero grazing were not significantly (p ≤ 0.05) different from the levels of soil-extractable P and degree of P saturation of 22.8 mg kg⁻¹and 12.9 % in pastures with rotational grazing, respectively. On the effect of FT, levels of soil-extractable P and degree of P saturation were significantly higher in pastures with rhizoma peanuts than in pastures with bahiagrass. There was no net gain of soil-extractable P due to the presence of animals in pastures with rotational grazing. Averaged across years, soil-extractable P in pastures with rotational grazing and with “zero” grazing was less than 150 mg kg⁻¹, the water quality protection. There had been no movement of soil-extractable P into the soil pedon since average degree of P saturation in the upper 15 cm was 14.3 % while the average degree of P saturation in soils at 15–30 cm was about 9.9 %. Overall, average extractable P did not exceed the crop requirement threshold of 50 mg P kg⁻¹and the soil P saturation threshold of 25 %, suggesting that reactive P is not a problem. Our study revealed that rhizoma peanuts and bahiagrass differ both in their capacity to acquire nutrients from the soil and in the amount of nutrients they need per unit growth. Rhizoma peanuts, which are leguminous forage, would require higher amounts of P compared with bahiagrass. The difference in the amount of P needed by these forages could have a profound effect on their P uptake that can be translated to the remaining amount of P in the soils. Periodic applications of additional P may be necessary especially for pastures with rhizoma peanuts to sustain their agronomic needs and to potentially offset the export of P due to animal production. Addition of organic amendments could represent an important strategy to protect pasture lands from excessive soil resources exploitation.

This paper reports the effect of earthworm population density on the vermicomposting of effluent treatment plant sludge of a bakery industry. Four waste mixtures containing 0, 10, 20, and 30 % sludge along with cow dung with five different worm population densities were established for 14 weeks under controlled moisture and temperature conditions. The results showed that average worm biomass, growth and cocoon production were lesser at higher population densities. Sexual maturity was attained in 3rd to 5th week in all waste mixtures. Worm growth was inversely related to worm population density in the waste mixture. Results also indicated that lower worm population is favorable to worm biomass production. On the other hand, mineralization and stabilization of the waste mixtures were more at higher worm populations.

The possibility of using different densities of cherry tomato as a bio-filter in a simple media-based aquaponic system to recycle nutrients from pearl gourami intensive culture wastewater was evaluated. Water quality parameters including total ammonia nitrogen (TAN), nitrite (NO₂ ⁻), nitrate (NO₃ ⁻), phosphate (PO₄ ³⁻), pH, and dissolved oxygen (DO) were determined in outlet of the aquaponic system during a 60-day experimental period. Cherry tomato was planted at four densities of 0 (control), 3 (T1), 6 (T2), and 9 (T3) plants per aquaponic unit with a constant fish stock density. Each treatment was equipped with aquaponic systems containing fish tank and plant growing bed. Productivity of the system was measured by recording the fish and plant growth indices. The potential in removing nitrogen of the water was the highest in T3 (with nine plants) compared to other treatments (p < 0.05). The highest concentrations of TAN (6.59 ± 0.241 mg/L), nitrite (0.42 ± 0.005 mg/L), nitrate (0.45 ± 0.162 mg/L), and phosphate (30.47 ± 0.371 mg/L) were obtained in control group, while the lowest concentrations of TAN (0.05 ± 0.091 mg/L), NO₂ ⁻ (0.11 ± 0.008 mg/L), NO₃ ⁻ (29.77 ± 0.205 mg/L), and phosphate (18.59 ± 0.185 mg/L) were detected in T3 (p < 0.05). The maximum fish weight gain was recorded in T3 (26 ± 0.014%) with 1.26 ± 0.059 FCR, and the lowest fish weight gain was measured in the control group (15 ± 0.024%) with 2.19 ± 0.446 FCR (p < 0.05). Total plant length gain was reached at the maximum value in T3 (74.70 ± 1.153 cm) in comparison to other groups (p < 0.05). It was concluded that small-scale aquaponic growing bed system can be created a sustainable ecosystem which both the plant and fish can thrive and suitable for home-made production system.

Although the aquaculture of spiny lobsters has been expanding since the 1970s, very little is known about the potential environmental impacts on water quality of this activity. This study quantified the production of dissolved inorganic nitrogen (DIN) from Australasian red spiny lobsters, Jasus edwardsii, in the laboratory, and these data were then used in a numerical model to predict the dispersal pattern of DIN from a hypothetical commercial spiny lobster farm for a coastal site where such a farm would typically be located. Modelling scenarios were set up with combinations of two different stocking densities (3 and 5 kg m⁻³), two different diets (mussels and moist artificial diet) and three different feed conversion ratios (FCR = 3, 5 and 28). DIN excretion rate from unfed lobsters in the laboratory on average was 1.10 ± 0.12 μg N g⁻¹ h⁻¹ while feeding lobsters on mussels and artificial diet increased DIN excretion significantly by around eightfold and twofold, respectively. Ammonia was consistently the dominant contributor to measured DIN output from lobsters. Modelling results indicated that the mean elevated DIN from a hypothetical farm where the lobsters were fed with mussels ranged from 7 up to 20 μg N L⁻¹ with increasing stocking density and FCR and was 30–150 % higher than the mean elevated DIN resulting from lobsters fed with artificial diet. Overall, the results indicated that DIN output from the hypothetical spiny lobster sea-cage farming is unlikely to be problematic using the FCR, stocking density, and the number of cages modelled at the coastal site in this study. Furthermore, feeding lobsters with artificial diet can help maintain a lower DIN output than seafood, such as mussels or trash fish.