Pterygoplichthys is a genus of related suckermouth armoured catfishes native to South America, which have invaded tropical and subtropical regions worldwide. Physiological features, including an augmented resistance to organic xenobiotics, may have aided their settlement in foreign habitats. The liver transcriptome of Pterygoplichthys anisitsi was sequenced and used to characterize the diversity of mRNAs potentially involved in the responses to natural and anthropogenic chemicals. In total, 66,642 transcripts were assembled. Among the identified defensome genes, cytochromes P450 (CYP) were the most abundant, followed by sulfotransferases (SULT), nuclear receptors (NR) and ATP binding cassette transporters (ABC). A novel expansion in the CYP2Y subfamily was identified, as well as an independent expansion of the CYP2AAs. Two expansions were also observed among SULT1. Thirty-two transcripts were classified into twelve subfamilies of NR, while 21 encoded ABC transporters. The diversity of defensome transcripts sequenced herein could contribute to this species' resistance to organic xenobiotics.

A spatial risk assessment model is developed for the Great Barrier Reef (GBR, Australia) that helps identify reef locations at higher or lower risk of coral bleaching in summer heat-wave conditions. The model confirms the considerable benefit of discriminating nutrient-enriched areas that contain corals with enlarged (suboptimal) symbiont densities for the purpose of identifying bleaching-sensitive reef locations. The benefit of the new system-level understanding is showcased in terms of: (i) improving early-warning forecasts of summer bleaching risk, (ii) explaining historical bleaching patterns, (iii) testing the bleaching-resistant quality of the current marine protected area (MPA) network (iv) identifying routinely monitored coral health attributes, such as the tissue energy reserves and skeletal growth characteristics (viz. density and extension rates) that correlate with bleaching resistant reef locations, and (v) targeting region-specific water quality improvement strategies that may increase reef-scale coral health and bleaching resistance.

Oceanic plastic debris found in the digestive tracts of seabirds includes industrial plastic pellets and post-consumer user plastics. We examined whether the amount and type of plastic ingested by Cassin's Auklets (Ptychoramphus aleuticus) is changing by surveying the stomach contents of 171 Cassin's Auklets stranded along the Washington and Oregon coasts in 2014. We found that 41.5% of the birds contained plastic in their ventriculi, similar to values from the North Subarctic Pacific reported in the 1980s. Industrial pellets were found in 22.8% of our samples, and accounted for 28.1% of all the plastic pieces found. Industrial pellets tended to be larger than pieces of user plastic and accounted for 40.2% of total plastic weight. These industrial pellets were significantly smaller than those found in other species, suggesting either that Cassin's Auklets selected smaller plastic particles or that plastic was retained in ventriculi and worn down.

Marine debris is a management issue with ecological and recreational impacts for agencies, especially on remote beaches not accessible by road. This project was implemented to remove and document marine debris from five coastal National Park Service units in Alaska. Approximately 80km of coastline were cleaned with over 10,000kg of debris collected. Marine debris was found at all 28 beaches surveyed. Hard plastics were found on every beach and foam was found at every beach except one. Rope/netting was the next most commonly found category, present at 23 beaches. Overall, plastic contributed to 60% of the total weight of debris. Rope/netting (14.6%) was a greater proportion of the weight from all beaches than foam (13.3%). Non-ferrous metal contributed the smallest amount of debris by weight (1.7%). The work forms a reference condition dataset of debris surveyed in the Western Arctic and the Gulf of Alaska within one season.

Toxic effects of triphenyltin (TPT) to different life stages of the marine medaka Oryzias melastigma were investigated through a series of life-cycle based exposure experiments. In embryo stage, TPT exposure could elevate the heartbeat rate at Day 6–8 post-fertilization and increase the expression levels of five heart development related genes (i.e., ATPase, COX2, BMP4, GATA4 and NKX2.5). In larval stage, TPT shortened the body length at ≥10μg/L and suppressed the swimming activity of the fish larvae at Day 1 post-hatching at 50μg/L. In reproductive stage, TPT exposure resulted in a male-biased sex ratio (2μg/L) and reduced the gonadosomatic index (GSI) in females (≥ 0.1μg/L), which might in turn lead to a decline in their population fitness. The reproductive stage of O. melastigma was more sensitive to TPT than other stages, while the GSI of female medaka was the most sensitive endpoint.

The organic enrichment of surficial sediments has a known effect on benthic faunal communities due largely to oxygen depletion and sulfide toxicity. Total dissolved sulfide (free S−2=H2S+HS−+S2−) concentrations in sediments are widely measured as a practical indicator of community effects. However, the standard ion selective electrode (ISE) method for free S−2 analysis can provide biased results owing to the inclusion of non-toxic mineral sulfides and the oxidation and volatilization of free S−2. A rapid field protocol was developed that alleviates these problems while also providing data on dissolved oxygen concentrations. Sediments collected near salmon aquaculture pens over cohesive and permeable substrates were analysed using the standard and new protocols. The results confirm previous conclusions of artifacts with the standard ISE method, while the dual indicator approach more accurately describes the stages, spatial extent and magnitude of sediment geochemical alterations affecting benthic communities.

The proximity of coral reefs to coastal urban areas and shipping lanes predisposes corals to petroleum pollution from multiple sources. Previous research has evaluated petroleum toxicity to coral using a variety of methodology, including monitoring effects of acute and chronic spills, in situ exposures, and ex situ exposures with both adult and larval stage corals. Variability in toxicant, bioassay conditions, species and other methodological disparities between studies prevents comprehensive conclusions regarding the toxicity of hydrocarbons to corals. Following standardized protocols and quantifying the concentration and composition of toxicant will aid in comparison of results between studies and extrapolation to actual spills.

Inflow of wastewater from upstream causes a large flux of pollutants to enter Kaohsiung Harbor in Taiwan daily. To reveal the ecological risk posed by Kaohsiung Harbor sediments, an ecological metabolomic approach was employed to investigate environmental factors pertinent to the physiological regulation of the marine amphipod Hyalella azteca. The amphipods were exposed to sediments collected from different stream inlets of the Love River (LR), Canon River (CR), Jen-Gen River (JR), and Salt River (SR). Harbor entrance 1 (E1) was selected as a reference site. After 10-day exposure, metabolomic analysis of the Hyalella azteca revealed differences between two groups: {E1, LR, CR} and {JR, SR}. The metabolic pathways identified in the two groups of amphipods were significantly different. The results demonstrated that NMR-based metabolomics can be effectively used to characterize metabolic response related to sediment from polluted areas.

Contamination by microplastic particles and fibres has been observed in sediment and animals sampled from the Firth of Clyde, West Scotland. In addition to microplastics released during clothes washing, a probable source is polymer ropes in abandoned, lost and discarded fishing and recreational sailing gear. The fragmentation of polypropylene, polyethylene, and nylon exposed to benthic conditions at 10m depth over 12months was monitored using changes in weight and tensile properties. Water temperature and light levels were continuously monitored. The degree of biofouling was measured using chlorophyll a, the weight of attached macroalgae, and colonising fauna. Results indicate microplastic fibres and particles may be formed in benthic environments despite reduced photodegradation. Polypropylene, Nylon, and polyethylene lost an average of 0.39%, 1.02%, and 0.45% of their mass per month respectively. Microscope images of the rope surface revealed notable surface roughening believed to be caused by abrasion by substrate and the action of fouling organisms.

The components of bioerosion were investigated during ENCORE (The Effect of Nutrient Enrichment on Coral Reefs) over 2years of controlled additions of dissolved inorganic nitrogen and phosphorus. The study was carried out at One Tree Island, southern Great Barrier Reef, Australia. Rates of microbioerosion and external erosion by grazing were significantly higher at the enriched sites than at the control sites. Rates of accretion by coralline algae were also significantly higher at enriched sites. In contrast, rates of macroboring were not significantly different between enriched and control sites.This study highlights the importance of improving water quality on the reef to reduce rates of bioerosion given that quantities of dead coral substrates have recently substantially increased as a result of coral bleaching (Hughes et al., 2015) and several Crown of Thorns plagues (Fabricius et al., 2010; De'ath et al., 2012), on the Great Barrier Reef.