Twenty-four of 40 (60%) loggerhead turtle Caretta caretta post-hatchlings (carapace<9cm) that died within 2months of stranding on southern Cape beaches in April 2015 contained ingested anthropogenic debris. Plastic comprised of 99% of debris: 77% hard plastic fragments, 10% flexible packaging and 8% fibres; industrial pellets comprised only 3%, compared to ~70% in 1968–1973, when 12% of stranded post-hatchlings contained plastics. Turtles selected for white (38%) and blue (19%) items, but translucent items (23%) were under-represented compared to beach mesodebris. Ingested loads did not decrease up to 52days in captivity, indicating long retention times. Plastic killed 11 turtles by blocking their digestive tracts or bladders, and contributed to the deaths of five other turtles. Our results indicate that the amount and diversity of plastic ingested by post-hatchling loggerhead turtles off South Africa have increased over the last four decades, and now kill some turtles.

Sponges are important constituents of coral reef ecosystems, including those around the Arabian Peninsula. Despite their importance, our knowledge on demosponge diversity in this area is insufficient to recognize, for example, faunal changes caused by anthropogenic disturbances. We here report the first assessment of demosponge molecular biodiversity from Arabia, with focus on the Saudi Arabian Red Sea, based on mitochondrial and nuclear ribosomal molecular markers gathered in the framework of the Sponge Barcoding Project. We use a rapid molecular screening approach on Arabian demosponge collections and analyze results in comparison against published material in terms of biodiversity. We use a variable region of 28S rDNA, applied for the first time in the assessment of demosponge molecular diversity. Our data constitutes a solid foundation for a future more comprehensive understanding of sponge biodiversity of the Red Sea and adjacent waters.

The aims of the present study were to optimize and validate methods for esterase activity (EA), total oxidant status (TOS) and total antioxidant capacity (TAC) determination in mussel' gills, and to establish the relationships between these biomarkers and Pb, Cd and Cu pollution, in single form and ternary mixture. Two different buffers for sample homogenization, the need of ultracentrifugation, and analytical validation were evaluated. Coefficients of variation, when buffer without additives and ultracentrifugation were used, were <15%, and recovery were 97%–109% in all cases. The EA response tends to decrease with treatments, TOS decreased significantly in Cd and ternary groups, while TAC tended to increase in treatments with Pb, Cd and ternary groups. In conclusion, the methods for EA, TOS and TAC measurements in gills of mussel were precise and accurate and could be interesting resources in biomonitoring programmes.

The Mondego River estuary, located on the North Atlantic Ocean Ecoregion, is a basin affected by agricultural run-off with increasing signs of eutrophication. We evaluated the amounts and distribution of 56 priority pesticides belonging to distinct categories (insecticides, herbicides and fungicides). Temporal trends were considered and a total of 42 surface water samples were collected between 2010 and 2011. More than 55% of the GC–MS/MS-quantified pesticides were above the maximum amounts established by the European Directives (98/83/EC and 2013/39/EU). Based on the concentration addition (CA) and independent action (IA) models, we used a two-tiered approach to assess the hazard of the pesticide mixture, at the maximum concentration found, reflecting a potential risk. Short-term exposure using Artemia salina indicated a significant toxic effect where the locomotion of the animals was clearly affected.

Concentrations of CO2 and CH4 measured over 3 years at a rural site in the Spanish northern plateau were investigated together with vegetation and meteorological variables. Two procedures were implemented to study the annual evolution. Kernel estimation provided a detailed time description, and the harmonic model may be fitted easily. The site was characterised by grass from autumn to spring. However, vigorous growth was observed during the latter season due to the biological cycle of plants under favourable meteorological conditions. A CO2 peak was observed a fortnight before the time of maximum NDVI, and was attributed to the prevalence of respiration over photosynthesis. A pronounced trough was apparent in summer and was explained by the death of vegetation and active dispersion in a highly developed boundary layer. CH4 evolution was characterised by a deficit period from May to October, indicating that meteorological evolution played a key role. The harmonic model showed that annual and half-annual cycles evidenced a similar contribution for CO2, whereas said weight for the half-annual cycle was considerably smaller for CH4.

In this study, we analyzed and compared feces of free-living and cultivated fish species, Epinephelus fuscoguttatus under different environmental conditions in Indonesian waters. Metagenome analysis was performed using Illumina MiSeq sequencing of the whole metagenomic DNA isolated from fish feces samples. The analysis covered both prokaryotic and eukaryotic DNA. Feces samples from mariculture fish revealed a highly stable distribution of several orders of bacteria when compared to samples from free-living fish, which were highly diverse and dominated by Vibrionales, Pseudomonales, Rhizobiales and non-classifiable Alphaproteobacteria. The eukaryotic content of the samples was dominated by residues of the host and nine additional fish species that formed a portion of the diet. Investigations on functional annotations for predominant bacterial taxa, using Gene Ontology enrichment, revealed a number of functions related to DNA metabolic processes, especially DNA repair, as well as antibiotic response in the free-living fish species.

The purpose of this study was to investigate the toxic effects induced by benzo[a]pyrene and phenanthrene. For this purpose, a study was performed on the clam exposed to 0.0, 0.5, 4.5μgL−1 B(a)P and PHE for 15days using parameters of antioxidant defenses and oxidative stress. Antioxidant biomarkers including ethoxyresorufin-O-deethylase, glutathione S-transferase, superoxide dismutase, and glutathione and rylhydrocarbon hydroxylasein gills of Sinonovacula constricta, were analyzed after a 1-, 3-, 9- and 15-day exposure to seawater containing B(a)P and PHE. Integrated biomarker response was calculated by combining multiple biomarkers into a single value. The results showed that the activity of all antioxidant biomarkers was induced throughout the exposure period, and different patterns of variations were detected with exposure time. In addition, the study showed that the two concentrations used caused the activation of different general detoxification mechanisms, and the same concentration at different two PAH compounds induced different toxicity responses.

The applicability of estuarine meiofauna and harpacticoid copepods' communities in an artificial substrate unit (ASU) was assessed and compared to natural substrates (sediment and pneumatophores) as a tool to discern estuaries under different types of anthropogenic impacts. The ASU's replicates demonstrated a low variation of density among replicates when considering the total meiofauna and copepod species, which was reflected by a great similarity within the samples. In relation to the most abundant groups found, the ASU samples properly represented the natural substrates, even though nematodes were poor colonizers. That the ASU only showed significant differences between areas suggested that standard substrates could more efficiently detect the differences between communities and pointed toward the applicability of ASUs meiobenthic communities as useful tools for impact studies.

Hexachlorocyclohexane (HCH) isomers (α-, β-, and γ-), DDT and its metabolites (DDD and DDE) were detected in five individuals of Northern fulmar Fulmarus glacialis Linnaeus, 1761 from the Sea of Okhotsk. The average amount of HCHs in the organs of fulmars ranged from 608±177ng/g lipids in the total homogenate of the organs to 2093±264ng/g lipids in the feathers with skin. The average range of the amounts of DDTs was from 3606±333ng/g lipids in the feathers with skin to 4076±1624ng/g lipids in the feathers. The bioaccumulation of DDTs by seabirds of the Sea of Okhotsk is approximately equal to that of birds from other regions of the world's oceans, while the HCHs concentration is significantly higher.

The concentrations of mercury (Hg), selenium (Se) and metallothioneins (MT) were evaluated in fetuses, calves, juveniles and adults of the endangered coastal Franciscana dolphin (Pontoporia blainvillei) from Argentina. Mercury concentrations varied among analyzed tissues (liver, kidney, muscle and brain), with liver showing the higher concentrations in all specimens. An age-dependent accumulation was found in liver, kidney and brain. No significant relationship between Hg and MT concentrations was found for all tissues analyzed. Hepatic Hg molar concentrations were positively correlated with those of Se, indicating a great affinity between these two elements. Furthermore, dark granules of HgSe were observed in Kupffer cells in the liver by electron microscopy, suggesting the role of this macrophage in the detoxification of Hg. A transfer of Hg through placenta was proved. The presence of Hg in brain in all age classes did not show concentrations associated with neurotoxicity.