International audience | Soil trace metal concentrations (e.g., cadmium, copper, lead, zinc) in vegetable gardens have often been observed as exceeding the geochemical background levels. These metals are a threat both to soil and plant functioning and to human health through consumption of contaminated vegetables. We used a mass balance-based model to predict the four metal (Cd, Cu, Pb, Zn) concentrations in soils after a century’s cultivation for 104 urban vegetable gardens, located in three French metropolises, Nancy, Nantes, and Marseille, based on a survey of gardening practices. If current gardening practices are maintained, an increase in soil Cd (35% on average), Cu (183%), and Zn (27%) contents should occur after a century. Soil Pb concentration should not vary consistently. Organic amendments are the major source of Cd, Pb, and Zn, followed by chemical fertilizer while fungicide application is the major source of Cu. Cessation of chemical fertilizer use would only slightly reduce the accumulation of the four metals. The solubility of the four metals would decrease significantly after a century, when pH increases by one unit. A liming practice of acidic soils should therefore be a feasible way to prevent any increase in the metal mobility and bioavailability.

International audience | Characterizing waste ecotoxicity is laborious because of both the undefined nature of environmental samples and the diversity of contaminants that can be present. With regard to these limitations, traditional approaches do not provide information about the nature of the pollution encountered. To improve such assessments, a fluorescent library of 1870 transcriptomic reporters from Escherichia coli K12 MG1655 was used to report the ecotoxic status of environmental samples. The reliability of the approach was evaluated with 6 metallic pollutants (As, Cu, Cd, Hg, Pb, Zn) used alone and in mixture in pure and complex matrices. A total of 18 synthetic samples were used to characterize the specificity of the resulting metallic contamination fingerprints. Metallic contamination impacted 4.5 to 10.2% of the whole transcriptomic fingerprint of E. coli. The analysis revealed that a subset of 175 transcriptomic reporters is sufficient to characterize metallic contamination, regardless of the nature of the sample. A statistical model distinguished patterns due to metallic contamination and provided information about the level of toxicity with 93 to 98% confidence. The use of the transcriptomic assessment was validated for 17 complex matrices with various toxicities and metal contaminants, such as activated sludge, wastewater effluent, soil, wood and river water. The presence of metals and their associated toxicity, which seems linked to their bioavailabilities, were thereby determined. This method constitutes a possible tool to screen unknown complex samples for their metallic status and identify those for which a deeper characterization must be achieved by the use of traditional biosensors and analytical methods.

International audience | The presence of SARS-CoV-2 RNA has been extensively reported at the influent of wastewater treatment plants (WWTPs) worldwide, and its monitoring has been proposed as a potential surveillance tool to early alert of epidemic outbreaks. However, the fate of the SARS-CoV-2 RNA in the treatment process of WWTP has not been widely studied yet; therefore, in this study, we aimed to evaluate the efficiency of treatment processes in reducing SARS-CoV-2 RNA levels in wastewater. The treatment process of three WWTPs of the Parisian area in France was monitored on six different weeks over a period of 2 months (from April 14 to June 9, 2021). SARS-CoV-2 RNA copies were detected using digital polymerase chain reaction (dPCR). Investigation on the presence of variants of concern (Del69-70, E484K, and L452R) was also performed. Additionally, SARS-CoV-2 RNA loads in the WWTPs influents were expressed as the viral concentration in per population equivalent (PE) and showed a good correlation with French public health indicators (incidence rate). SARS-CoV-2 RNA loads were notably reduced along the water treatment lines of the three WWTPs studied (2.5-3.4 log reduction). Finally, very low SARS-CoV-2 RNA loads were detected in effluents (non-detected in over half of the samples) which indicated that the potential risk of the release of wastewater effluents to the environment is probably insignificant, in the case of WWTPs enabling an efficient biological removal of nitrogen.

Knowledge of the status of the black-lipped pearl oyster Pinctada margaritifera populations is critical for the sustainability of the French Polynesia black pearl farming industry. Indeed, this activity relies on collection of spat settling out of the water column, which is inherently related to the abundance of in situ benthic stocks and their reproductive capacities. From surveys performed between 2016 and 2021, we present new stock assessments of natural wild oyster populations from four contrasted pearl farming lagoons (Gambier, Takapoto, Raroia, Takume). Also using Ahe atoll historical data, we first highlight how results vary with the methods (Direct, Zonal and Cokriging) used to scale in situ density measurements to lagoon-scale stocks. Takapoto and Gambier populations were also previously surveyed at least twice since the 1980s, allowing to demonstrate with field data clear changes in stock distributions and population structures. The consequences of our findings are discussed to provide recommendations for stock monitoring and management in the future.

The pearl-farming industry depends mostly on the natural recruitment of pearl oysters. Little is known about the relative influence of different ecological processes on the natural recruitment of pearl oysters across biogeographical scales. Spatio-temporal dynamics of bivalve larvae and spats were described at Ahe and Mangareva, 1500 km apart across French Polynesia. We quantified the effect of candidate environmental predictors on the dynamics of larvae. Both lagoons showed similar temporal dynamics with twice more larvae and 6 times more spat in Ahe. Pinctada maculata spat were more abundant than for P. margaritifera at both lagoons. While the temporal dynamics in larvae abundance were best explained by a positive effect of temperature in Ahe, the dynamics in Mangareva were poorly predicted by the environmental variables, meaning bivalve early-life stages perform better in Ahe than Mangareva suggesting a mismatch between the relevant environmental forces driving larval dynamics at these two contrasting lagoons.

Trace elements and δ15N values were analysed in micronekton (crustaceans, fishes and squids) sampled in the south-western Indian Ocean. Myctophids were associated with high concentrations of arsenic at La Pérouse and MAD-Ridge seamounts, and with lead and manganese at MAD-Ridge and in the Mozambique Channel. The difference in cadmium, copper and zinc concentrations between micronekton broad categories reflected differing metabolic and storage processes. When significant, negative relationships were found between micronekton body size and trace element concentrations, which can possibly be attributed to differing metabolic activity in young and old individuals, dietary shifts and/or dilution effect of growth. No relationships were found between trace element concentrations and δ15N values of micronekton (except cobalt which decreased with increasing δ15N values), since most trace elements are not biomagnified in food webs due to regulation and excretion processes within organisms. All trace element pairs were positively correlated in fishes suggesting regulation processes.

Microplastics (MPs) were sampled in three seasons from 2016 to 2018 in the Bay of Marseille, northwestern Mediterranean Sea, adjacent to a highly urbanized area. Six sites were selected according to their different characteristics (river mouth, treatment plants, protected marine area). Surface floating MPs were characterized (number, weight, typology and polymer) as was zooplankton. In addition, mussels were submerged and used to investigate ingestion. Finally, a hydrodynamic model was used to improve understanding of dispersion mechanisms. The annual averages of floating MPs values ranged from 39,217 to 514,817 items/km2. The MPs collected were mainly fragments principally composed of polyethylene and polypropylene. The mean abundance ratio (MPs/zooplankton) was 0.09. On average 87% of mussel pools were contaminated and ingested 18.73 items/100 g of flesh. Two hydrodynamic patterns were identified: the first retaining the MPs in the harbor, and the second dispersing them outside.

French Polynesia atolls are spread on a vast 2300 by 1200 km Central Pacific Ocean area exposed to spatially and temporally dependent wave forcing. They also have a wide range of closed to open morphologies and several have been suitable to develop from black-lipped pearl oysters a substantial pearl farming activity in the past 30 years, representing nowadays the 2nd source of income for French Polynesia. Considering here only the component of lagoon renewal that is driven by waves, we investigate for 74 atolls different lagoon renewal metrics using 20 years of wave model data at 0.05° spatial resolution. Wavelet spectral analyses highlight that atolls, even in close vicinity, can be exposed to different and characteristic periodicities in wave-driven flows and water renewal. These characteristics are discussed in relation to pearl farming atolls, including atolls known to be efficient oyster spat producers, a critical activity for pearl farming sustainability.

Once previous industrial activity has ceased, brownfields are found in urban and suburban environments and managed in different ways ranging from being left untouched to total reconversion. These situations apply to large surface areas often impacted by residual diffuse pollution. Though significant and preventing any sensitive use, residual contamination does not necessarily require treatment. Moreover, conventional treatments show their technical and economic limits in these situations and gentle remediation options such as phytomanagement might appear more relevant to the management of those sites. Thus, these sites face up two major issues: managing moderate contamination levels and providing an alternative use of economic interest. This work proposes to assess a management strategy associating the phytoremediation of organic pollution along with the production of biomass for energy generation production. A 16-week controlled growth experiment was conducted on a soil substrate moderately impacted by multiple pollution (trace elements, mainly Zn and Pb, and hydrocarbons), by associating rhizodegradation with Medicago sativa or biomass production with Robinia pseudoacacia or Alnus incana in monocultures. The effect of a microbial inoculum amendment on the performances of these treatments was also evaluated. Results showed total hydrocarbons (TH), and to a lesser extent polycyclic aromatic hydrocarbons (PAH), concentrations decreased over time, whatever the plant cover. Good biomass production yields were achieved for both tree species in comparison with the control sample, even though R. pseudoacacia seemed to perform better. Furthermore, the quality of the biomass produced was in conformity with the thresholds set by the legislation concerning its use as a renewable energy source. | International audience

International audience