The microbial communities of bulk soil of rice paddy fields under an ancient organic agriculture regimen, consisting on an alfalfa-rice rotation system, were characterized. The drained soil of two adjacent paddies at different stages of the rotation was compared before rice seeding and after harvesting. The relationships among the soil microbial, physicochemical, and biochemical parameters were investigated using multivariate analyses. In the first year of rice cropping, aerobic cultivable heterotrophic populations correlated with lineages of presumably aerobic bacteria (e.g., Sphingobacteriales, Sphingomonadales). In the second year of rice cropping, the total C content correlated with presumable anaerobic bacteria (e.g., Anaerolineae). Independently of the year of rice cropping, before rice seeding, proteolytic activity correlated positively with the cultivable aerobic heterotrophic and ammonifier populations, the soil catabolic profile and with presumable aerobes (e.g., Sphingobacteriales, Rhizobiales) and anaerobes (e.g., Bacteroidales, Anaerolineae). After harvesting, strongest correlations were observed between cultivable diazotrophic populations and bacterial groups described as comprising N₂ fixing members (e.g., Chloroflexi-Ellin6529, Betaproteobacteria, Alphaproteobacteria). It was demonstrated that chemical parameters and microbial functions were correlated with variations on the total bacterial community composition and structure occurring during rice cropping. A better understanding of these correlations and of their implications on soil productivity may be valid contributors for sustainable agriculture practices, based on ancient processes.

Integrons are bacterial genetic elements known to be active vectors of antibiotic resistance among clinical bacteria. They are also found in bacterial communities from natural environments. Although integrons have become especially efficient for bacterial adaptation in the particular context of antibiotic usage, their role in natural environments in other contexts is still unknown. Indeed, most studies have focused on integrons and the spread of antibiotic resistance in freshwater or soil impacted by anthropogenic activities, with only few on marine environments. Notably, integrons show a wider diversity of both gene cassettes and integrase gene in natural environments than in clinical environments, suggesting a general role of integrons in bacterial adaptation. This article reviews the current knowledge on integrons in marine environments. We also present conclusions of our studies on polluted and nonpolluted backgrounds.

Intensive lignite and glass sand mining and industrial processing release waste which may contain elements hazardous to the aquatic ecosystem and constitute a potential risk to human health. Therefore, their levels must be carefully controlled. As a result, we examined the effects of sewage on the aquatic Fontinalis antipyretica moss in the Nysa Łużycka (lignite industry) and the Kwisa Rivers (glass sand industry). The Nysa Łużycka and the Kwisa Rivers appeared to be heavily polluted with As, Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, V and Zn, which were reflected in the extremely high concentration of these elements in F. antipyretica along the studied watercourses. In the Nysa Łużycka, trace element composition in the moss species is affected by lignite industry with accumulation in its tissues of the highest concentrations of Cd, Co, Cr, Cu, Mn, Ni, Pb and Zn, while samples from the Kwisa sites influenced by glass sand industry revealed the highest concentrations of As, V and Fe. The principal component and classification analysis classifies the concentration of elements in the aquatic F. antipyretica moss, thus enabling the differentiation of sources of water pollution in areas affected by mining industry.

A biomixture constitutes the active core of the on-farm biopurification systems, employed for the detoxification of pesticide-containing wastewaters. As biomixtures should be prepared considering the available local materials, the present work aimed to evaluate the performance of ten different biomixtures elaborated with by-products from local farming, in the degradation of the insecticide/nematicide carbofuran (CFN), in order to identify suitable autochthonous biomixtures to be used in the tropics. Five different lignocellulosic materials mixed with either compost or peat and soil were employed in the preparation of the biomixtures. The comprehensive evaluation of the biomixtures included removal of the parent compound, formation of transformation products, mineralization of radiolabeled CFN, and determination of the residual toxicity of the process. Detoxification capacity of the matrices was high, and compost-based biomixtures showed better performance than peat-based biomixtures. CFN removal over 98.5 % was achieved within 16 days (eight out of ten biomixtures), with half-lives below 5 days in most of the cases. 3-Hydroxycarbofuran and 3-ketocarbofuran were found as transformation products at very low concentrations suggesting their further degradation. Mineralization of CFN was also achieved after 64 days (2.9 to 15.1 %); several biomixtures presented higher mineralization than the soil itself. Acute toxicity determinations with Daphnia magna revealed a marked detoxification in the matrices at the end of the process; low residual toxicity was observed only in two of the peat-based biomixtures. Overall best efficiency was achieved with the biomixture composed of coconut fiber-compost-soil; however, results suggest that in the case of unavailability of coconut fiber, other biomixtures may be employed with similar performance.

After global commercialization of short-chain perfluoroalkyl acids (PFAAs) as substitutes to conventional long-chain PFAAs by the major manufacturers, two fluorine industry parks for production of short-chain PFAAs located in the Daling River Basin of northern China have developed rapidly in the last few years. This study provides a systematic assessment of sources, emissions, transportation, and potential risks of the PFAAs in this area. The C4 perfluorobutane sulfonic acid (PFBS) and perfluorobutanoic acid (PFBA) were the predominant short-chain PFAAs in river water, with maximum concentrations of 2.90 and 1.35 μg/L, respectively. Park 1 equipped with a telomerization process was identified to be the source of linear and branched mixtures of PFBS, PFBA, and perfluorooctanoic acid (PFOA), while park 2 with an electrochemical fluorination process (ECF) was identified to be the source of linear and branched mixtures of PFBS and PFOA. Partition coefficients between water and sediment were consistent for C4-C8 perfluoroalkyl carboxylic acids (PFCAs) but directly proportional to C9-C11 PFCAs and perfluoroalkyl sulfonic acids (PFSAs). Analysis on the health risk of PFBS and PFBA suggested that they were not without risk since short chain PFAAs are known to be recalcitrant during water treatment.

Biotests conducted with plants are presently used to estimate metal bioavailability in contaminated soils. But when plants are grown in soils, especially the plants with fine roots, root collection is easily biased and tedious. Indeed, at harvest, small amounts of soil can adhere to roots, resulting in overestimation of root metal content, and the finest roots are often discarded from the analysis because of their difficult and almost impossible recovery. This report presents a novel method for assessing the bioavailability of heavy metals in soils using microalgae. Two species of green unicellular microalgae were isolated from two highly contaminated soils and identified by phylogenetic and molecular evolutionary analyses as Chlorella sp. RBM and Chlorella sp. RHM. These two cultures were used to determine the metal uptake from metal-contaminated soils of South Australia as a novel, cost-effective, simple and rapid method for assessing the bioavailability of heavy metals in soils. The suggested method is an attempt to achieve a realistic estimate of bioavailability which overcomes the inherent drawback of root metal contamination in the bioavailability indices so far reported.

Atrazine (ATZ) is a commonly used herbicide that has recently come under scrutiny due to potential environmental toxicity and contamination. In this study, we found that the administration of ATZ indeed leads to reduction of photosynthesis and oxidative stress in Phaeodactylum tricornutum at the treated doses higher than 100 μg L⁻¹ after 48 h. We further explored the effect of ATZ on photosystem II (PSII) and gene expression of electron transport chain. Collectively, our results may suggest that ATZ entered the chloroplasts in alga depending on ATZ’s liposolubility and directly attacked on the electron transport chain, especially PSII, contributing to reactive oxygen species (ROS) burst. The increasing ROS could act as signals to induce or disturb the expression of photosynthesis-related genes, resulting in the imbalance of antioxidation and pro-oxidation in the alga.

This study investigates the variations of polycyclic aromatic hydrocarbon (PAH) levels in surface water, suspended particulate matter (SPM) and sediment upstream and downstream of the discharges of two wastewater treatment plant (WWTP) effluents. Relationships between the levels of PAHs in these different matrices were also investigated. The sum of 16 US EPA PAHs ranged from 73.5 to 728.0 ng L⁻¹ in surface water and from 85.4 to 313.1 ng L⁻¹ in effluent. In SPM and sediment, ∑₁₆PAHs ranged from 749.6 to 2,463 μg kg⁻¹ and from 690.7 μg kg⁻¹ to 3,625.6 μg kg⁻¹, respectively. Investigations performed upstream and downstream of both studied WWTPs showed that WWTP discharges may contribute to the overall PAH contaminations in the Loue and the Doubs rivers. Comparison between gammarid populations upstream and downstream of WWTP discharge showed that biota was impacted by the WWTP effluents. When based only on surface water samples, the assessment of freshwater quality did not provide evidence for a marked PAH contamination in either of the rivers studied. However, using SPM and sediment samples, we found PAH contents exceeding sediment quality guidelines. We conclude that sediment and SPM are relevant matrices to assess overall PAH contamination in aquatic ecosystems. Furthermore, we found a positive linear correlation between PAH contents of SPM and sediment, showing that SPM represents an integrating matrix which is able to provide meaningful data about the overall contamination over a given time span.

In the present study, landfill leachate of three landfill sites of Delhi, India, was toxico-chemically analyzed for human risk assessment. Raw leachate samples were collected from the municipal solid waste (MSW) landfills of Delhi lacking liner systems. Samples were characterized with relatively low concentrations of heavy metals while the organic component exceeded the upper permissible limit by up to 158 times. Qualitative analysis showed the presence of numerous xenobiotics belonging to the group of halogenated aliphatic and aromatic compounds, polycyclic aromatic hydrocarbons (PAHs), phthalate esters, and other emerging contaminants. Quantitative analysis of PAHs showed that the benzo(a)pyrene-toxic equivalence quotient (BaP-TEQ) ranged from 41.22 to 285.557 ng L⁻¹. The human risk assessment methodology employed to evaluate the potential adverse effects of PAHs showed that the cancer risk level was lower than the designated acceptable risk of 10⁻⁶. However, significant cytotoxic and genotoxic effects of leachates on HepG2 cell line was observed with MTT EC₅₀ value ranging from 11.58 to 20.44 % and statistically significant DNA damage. Thus, although the leachates contained low concentrations of PAHs with proven carcinogenic potential, but the mixture of contaminants present in leachates are toxic enough to cause synergistic or additive cytotoxicity and genotoxicity and affect human health.

Polychlorinated diphenyl ethers (PCDEs) are a group of halogenated aromatic compounds and serious environmental pollutants. In the present study, sediment and water samples from eight sites in Nanjing section of the Yangtze River were characterized with 15 congeners of PCDEs. Concentrations and distributions of these PCDEs in water phase and sediments were analyzed by GC/MS. Results demonstrated that ∑PCDE concentrations were higher in the low water period (1.15–1.80 μg/L) than those in the high water period (0.73–1.30 μg/L) in water phase. Moreover, ∑PCDE concentrations were higher in the low water period (1.58–3.98 μg/kg) than those in the high water period (1.24–3.48 μg/kg) in sediments. A significant linear relationship existed between the ∑PCDE concentrations and TOC contents in sediments, but a poor linearity was found between ∑PCDE concentrations and DOC contents in water phase. Furthermore, the comparison of the percentage compositions in sediments and in water phase showed that CDE-30 (2,4,6-tri-CDE) was the predominant congener in the studied sites, and higher chlorinated congeners accounted for a larger proportion in sediments than those in water phase. In conclusion, the present study demonstrated the prevalent contamination by PCDEs in sediments and water from the Nanjing section of the Yangtze River.