Photo-acclimatisation by the algal endosymbionts of scleractinian corals to changes in environmental conditions may influence their density and/or the concentration of photosynthetic pigments, and hence coral brightness, on short time-scales. To examine coral pigmentation as a bioindicator of water quality, the brightness of massive corals was quantified using colour charts, concentrations of the pigment chlorophyll a and reflectance spectrometry in the field and with manipulative experiments. Along a water quality gradient, massive Porites became progressively lighter as nutrients decreased and irradiance increased. A laboratory experiment showed that Porites nubbins darkened within 25days following exposure to reduced water quality. The results of a transplantation experiment of Porites nubbins in a manipulation incorporating multiple depths and zones of water quality confirmed colony brightness as a simple tool to monitor changes in marine water quality, provided effects due to other influences on pigmentation, e.g. seawater temperatures, are taken into consideration.

The aim of this research was to explore the possibility of a successful and balanced integration of fish farming installations into an ecosystem dominated by Posidonia oceanica (L.) Delile species. We selected light, temperature, seabed topography, sediment characteristics, meadow density, bottom coverage, maximum leaf length and lower depth limit as principle components in assessing the influence of the fish farm. All P. oceanica descriptors showed significant correlation with light deprivation effect while sediment organic matter content revealed slightly higher values than normal, increasing with distance from the cages. The results point to a conclusion that in such lightly nutrient enriched ecosystems, the seagrass growth and distribution are principally controlled by the shadow that cages cast on the seabed below, and that when carefully planned, fish farms do not necessarily degrade the health status of the surrounding area, but in fact facilitate a transition into a secondary stable state.

This study examined the efficacy of heated seawater for the treatment and remediation of fouled vessel sea chest habitats. In laboratory trials, three temperature regimes (37.5°C for 60min, 40°C for 30min and 42.5°C for 20min) were tested on a range of temperate taxa commonly found in sea chests. Field validation trials further assessed the efficacy of heat treatment within a replica sea chest environment. During laboratory trials, 100% mortality was achieved across all three treatments for the majority of taxa; the exceptions being the barnacle Elminius modestus and the oyster Crassostrea gigas. Temperature tolerance limits observed in the laboratory were successfully replicated under simulated sea chest conditions; however, a failure to achieve even heat distribution was an obstacle to achieving uniform mortality. This study provides guidance on the temperature/exposure parameters required for vessels plying temperate latitudes, and demonstrates that heated seawater has potential for controlling biofouling in vessel sea chests.

This article assesses the ecological and economic impacts of land reclamation and dredging through consulting recent environmental impact assessment reports. Geographic features of Bahrain during 1963–2008 are produced using Geographical Information System. Extensive but inexpensive shallow coastal areas and tidal flats have been reclaimed particularly from 1997 to 2007 at a high rate of 21km²/year. Formal records show the increase in the original land mass by the year 2008 to be 91km². An estimated total cumulative loss of major habitats resulting from 10 reclamation projects was around 153.58km². Also much larger scale impacts should be considered resulting from the borrow areas used for the extraction of sand or infill materials. A number of key habitats and species are affected in the vicinity of these projects. The study attempts to assign a monetary value to the marine ecosystem functions. There is a need for efficient coastal zone management to regulate a sustainable use of the marine resources.

The Bird’s Head Seascape located in eastern Indonesia is the global epicenter of tropical shallow water marine biodiversity with over 600 species of corals and 1,638 species of coral reef fishes. The Seascape also includes critical habitats for globally threatened marine species, including sea turtles and cetaceans. Since 2001, the region has undergone rapid development in fisheries, oil and gas extraction, mining and logging. The expansion of these sectors, combined with illegal activities and poorly planned coastal development, is accelerating deterioration of coastal and marine environments. At the same time, regency governments have expanded their marine protected area networks to cover 3,594,702ha of islands and coastal waters. Low population numbers, relatively healthy natural resources and a strong tenure system in eastern Indonesia provide an opportunity for government and local communities to collaboratively manage their resources sustainably to ensure long-term food security, while meeting their development aspirations.

Development of the Great Barrier Reef (GBR) catchments in the last 150years has increased the loads of suspended sediment, nutrients and pesticides (‘pollutants’) delivered to the GBR. The scale and type of development, the pollutants generated and the ecosystems offshore vary regionally. We analysed the relative risk of pollutants from agricultural land uses and identified the sources of these pollutants from different land uses for each region to develop priorities for management. The assessment showed the Wet Tropics and Mackay Whitsunday regions to be of relatively high risk dominated by sugarcane cultivation, contributing pesticide and dissolved inorganic nitrogen (DIN). The Burdekin and Fitzroy ranked medium–high risk dominated by grazing suspended sediment inputs for both, and additionally sugarcane DIN and pesticide inputs for the Burdekin. The Burnett Mary ranked medium risk, dominated by grazing and sugarcane. Cape York was not formally ranked but is considered to be low risk.

Surface sediments from intertidal Bohai Bay were sampled for the geochemical and environmental assessment of six trace metals (Cd, Cr, Cu, Ni, Pb and Zn). Results indicate that sediment grain size plays an important role in controlling the distribution and fractionation of them. Metal concentrations in clayey silt sediments are all clearly higher than in sand and silty sand ones. Cd and Pb in clayey silt sediments are more mobile than in sand and silty sand ones. Two sediment quality guidelines and two geochemical normalization methods (index of geoaccumulation and enrichment factor) were used to judge the potential risk and accumulation of metals. According to the mean probable effects level quotient, the combination of studied metals may have a 21% probability of being toxic. The sediments with high fraction of clay and silt have been contaminated by trace metals to various degrees, among which Cr contributes the most to contamination.

Fish accumulate several trace elements in muscle, gills and liver, however studies also indicate that metals can be excreted through bile. Since metal contamination leads to modifications in bile composition, biliary excretion offers an alternative way to evaluate the presence of trace-elements. Bile is easier to obtain than other organs and presents a simpler matrix, making it easier for chemical pre-treatment. To verify if bile can be useful as a biomonitoring tool for metal contamination, liver and bile trace element concentrations were determined and correlated. The Artificial Neural Networks statistical technique was used to verify if liver trace-element quantification could be substituted by bile analysis. Results show that significant correlations were obtained between trace elements in bile and liver and the ANN validated the hypothesis that certain trace-elements in bile could be utilized instead of liver trace-elements. Further studies in this field are of interest to further validate this biomarker.

Land use (and land management) change is seen as the primary factor responsible for changes in sediment and nutrient delivery to water bodies. Understanding how sediment and nutrient (or constituent) concentrations vary with land use is critical to understanding the current and future impact of land use change on aquatic ecosystems. Access to appropriate land-use based water quality data is also important for calculating reliable load estimates using water quality models. This study collated published and unpublished runoff, constituent concentration and load data for Australian catchments. Water quality data for total suspended sediments (TSS), total nitrogen (TN) and total phosphorus (TP) were collated from runoff events with a focus on catchment areas that have a single or majority of the contributing area under one land use. Where possible, information on the dissolved forms of nutrients were also collated. For each data point, information was included on the site location, land use type and condition, contributing catchment area, runoff, laboratory analyses, the number of samples collected over the hydrograph and the mean constituent concentration calculation method. A total of ∼750 entries were recorded from 514 different geographical sites covering 13 different land uses. We found that the nutrient concentrations collected using “grab” sampling (without a well defined hydrograph) were lower than for sites with gauged auto-samplers although this data set was small and no statistical analysis could be undertaken. There was no statistically significant difference (p<0.05) between data collected at plot and catchment scales for the same land use. This is most likely due to differences in land condition over-shadowing the effects of spatial scale. There was, however, a significant difference in the concentration value for constituent samples collected from sites where >90% of the catchment was represented by a single land use, compared to sites with <90% of the upstream area represented by a single land use. This highlights the need for more single land use water quality data, preferably over a range of spatial scales. Overall, the land uses with the highest median TSS concentrations were mining (∼50,000mg/l), horticulture (∼3000mg/l), dryland cropping (∼2000mg/l), cotton (∼600mg/l) and grazing on native pastures (∼300mg/l). The highest median TN concentrations are from horticulture (∼32,000μg/l), cotton (∼6500μg/l), bananas (∼2700μg/l), grazing on modified pastures (∼2200μg/l) and sugar (∼1700μg/l). For TP it is forestry (∼5800μg/l), horticulture (∼1500μg/l), bananas (∼1400μg/l), dryland cropping (∼900mg/l) and grazing on modified pastures (∼400μg/l). For the dissolved nutrient fractions, the sugarcane land use had the highest concentrations of dissolved inorganic nitrogen (DIN), dissolved organic nitrogen (DON) and dissolved organic phosphorus (DOP). Urban land use had the highest concentrations of dissolved inorganic phosphorus (DIP). This study provides modellers and catchment managers with an increased understanding of the processes involved in estimating constituent concentrations, the data available for use in modelling projects, and the conditions under which they should be applied. Areas requiring more data are also discussed.

The current status of mercury concentrations in the Gulf of Mexico (GOM) were assessed using the Mussel Watch Program (MWP) contaminant monitoring data, which is based on the analysis of oyster tissue and sediment samples. In both matrices, tHg and MeHg concentrations varied broadly. Significant concentration differences (p<0.05) between the sub-regions of the eastern, central and western Gulf were observed with maximum concentrations (hotspots) found at specific sites all across the Gulf. Compared to the Food and Drug Administration’s action level in seafood, maximum mercury values were low. Based on the long-term MWP data, tHg in tissues show fairly static temporal trends along the central and western Gulf coast, while strong decreasing trends were observed in the eastern Gulf. However, the presence of mercury hotspots indicates that mercury is still a concern in the GOM. The results complement existing information to further the understanding of mercury distributions in the GOM.