The Great Barrier Reef (GBR) is a World Heritage Area and contains extensive areas of coral reef, seagrass meadows and fisheries resources. From adjacent catchments, numerous rivers discharge pollutants from agricultural, urban, mining and industrial activity. Pollutant sources have been identified and include suspended sediment from erosion in cattle grazing areas; nitrate from fertiliser application on crop lands; and herbicides from various land uses. The fate and effects of these pollutants in the receiving marine environment are relatively well understood. The Australian and Queensland Governments responded to the concerns of pollution of the GBR from catchment runoff with a plan to address this issue in 2003 (Reef Plan; updated 2009), incentive-based voluntary management initiatives in 2007 (Reef Rescue) and a State regulatory approach in 2009, the Reef Protection Package. This paper reviews new research relevant to the catchment to GBR continuum and evaluates the appropriateness of current management responses.

This study examined the distribution of virioplankton and bacterioplankton in two coral reef systems (Ahe and Takaroa atolls) in the Tuamotu Archipelago, in comparison with the surrounding oligotrophic ocean. Mean concentrations of 4.8×10⁵ and 6.2×10⁵cellsml⁻¹ for bacteria and 8.1×10⁶ and 4.3×10⁶VLP(virus-like particle) ml⁻¹ were recorded in Ahe and Takaroa lagoons, respectively. Chlorophyll-a concentrations and dissolved organic matter were higher in Ahe whereas ³H thymidine incorporation rates were higher in Takaroa. First data on lytic and lysogenic strategies of phages in coral reef environments were discussed in this paper. The fraction of visibly infected cells by viruses was negligible regardless of the lagoon station (mean=0.15%). However, the fraction of lysogenic cells ranged between 2.5% and 88.9%. Our results suggest that the distribution patterns of virioplankton are apparently not coupled to the spatial dynamics of the bacterioplankton communities.

The spatial variations of the picoplankton (photoautotrophic and heterotrophic microorganisms) in the Ahe atoll lagoon were studied in May and October 2008 to assess whether they were affected by human activities along the atoll. Spatial patterns were studied using 10 sampling stations chosen according to the location of the anthropogenic activities (pearl farming, harbor). Experiments were also carried out to determine whether bacterial growth, with or without predators, was limited by inorganic (N and P) substrates. The results showed that heterotrophic bacterioplankton abundance was superior to the photoautotrophic organisms, especially in May. Significant increases in bacterial abundance were observed in May after 24h incubation with +P and +N (but not in October). All samples complied with the quality levels for fecal indicator bacteria (FIB) defined by the European Union and there was no evidence that human sewage had any impact on picoplankton over the whole atoll.

The present study reports the level of total petroleum hydrocarbon (TPH) in 27 commercially important fish, crustaceans and cephalopods from Orissa coast, Bay of Bengal to provide the baseline data for oil contamination in marine biota. The results showed significant differences in the TPH concentration in different species. Of all fish, Carangoides malabaricus showed the maximum TPH level (av. 13.70μgg⁻¹). In cephalopods, Loligo recorded the maximum TPH (av. 14.87μgg⁻¹) while Metapenaeus dobsoni recorded the maximum TPH (av. 13.18μgg⁻¹) among crustaceans. The concentration of TPH recorded in the present study were higher than the reported values from other studies in Bay of Bengal but were comparable with those of other Indian coast and Gulf water. The species recording maximum concentration and giving significant correlation coefficient may be of interest in oil pollution monitoring and can be used as indicator of hydrocarbon pollution in the region.

This paper discusses the distribution patterns of trace metals in sediments and suspended particulate matter (SPM) in the three main estuaries of the Todos os Santos Bay (BTS), Brazil, during dry and rainy seasons. Data available up to 2012 was also reviewed to assess the status of contamination. For most elements, metal concentrations in sediments decreased from the tidal limits to the lower estuary. Metals in SPM presented more complex distributions along the salinity gradient. Metal variability between rainy and dry conditions was only significant for SPM data. Of the BTS estuaries, the levels of Cd, Zn, Pb and Cu are highest in the Subaé estuary, and they seem to be promoting harmful biological effects in macrofauna, and also may pose potential human health risks. Despite the evidence of important localized contamination, much of the data compiled indicates that the bay and its estuaries are still relatively preserved.

The aim of this study was to assess the impact of sewage discharge on coastal waters by evaluating the influence of physicochemical parameters on the presence of enteric microorganisms in seawater samples collected from 11 beaches in Florianopolis, Santa Catarina, Brazil, over a one-year period (August 2009 to July 2010). Samples were assessed for the presence of human adenoviruses (HAdV), polyomavirus (JCPyV), hepatitis A virus (HAV), and noroviruses (HuNoV GI and GII). Escherichia coli and physicochemical parameters (salinity, temperature, pH and dissolved oxygen) were also evaluated. From the 132 samples analyzed, 55% were positive for HAdV, 51.5% for HAV, 7.5% for HuNoV GI, 4.5% for HuNoV GII, and 3% for JCPyV. E. coli levels ranged from 8 to 1325CFU/100mL at all sites. The overall results highlight the problem of sewage discharge into coastal waters and confirm that there is no correlation between viral presence and bacterial contamination.

This article describes design and application of feed-forward, fully-connected, three-layer perceptron neural network model for computing the water quality index (WQI)¹ for Kinta River (Malaysia). The modeling efforts showed that the optimal network architecture was 23-34-1 and that the best WQI predictions were associated with the quick propagation (QP) training algorithm; a learning rate of 0.06; and a QP coefficient of 1.75. The WQI predictions of this model had significant, positive, very high correlation (r=0.977, p<0.01) with the measured WQI values, implying that the model predictions explain around 95.4% of the variation in the measured WQI values. The approach presented in this article offers useful and powerful alternative to WQI computation and prediction, especially in the case of WQI calculation methods which involve lengthy computations and use of various sub-index formulae for each value, or range of values, of the constituent water quality variables.

UVF may occur in the aquatic environment through two principal sources: direct inputs from recreational activities and indirect wastewater- and river-borne inputs. The aim of this study was to obtain a first overview of levels of three UVF (EHMC, OC and OD-PABA) in coastal areas subjected to river inputs, untreated wastewater discharges and dumpsite leachates. We selected three eastern Mediterranean rivers that have been impacted for decades by untreated wastewater release and collected sediment in the coastal zone during the hot and humid seasons. Western Mediterranean sites receiving treated wastewaters were analyzed for comparison. The results gave an overview of sediment contamination under these two contrasted situations representative of Mediterranean coastal areas without bathing activities. The analysis of the three UVF revealed the ubiquity and high point source contamination by EHMC and OC in transition and coastal zones, with levels as high as 128ngg⁻¹d.w. OD-PABA was also frequently detected, but at lower concentrations (<LOD-17ngg⁻¹d.w.). A temporal trend was observed, with a higher sediment concentration in the dry period (August and October). Based on these results, we conclude that there is background contamination from river input that could be exacerbated by the direct contribution in coastal bathing zones.

The mode of action of PAHs that causes fish developmental malformations is unclear. The embryotoxicity of marine medaka (Oryzias melastigma) was investigated after individual exposure to three- to five-ring PAHs Phe, Py, and BaP or co-exposure with α-ANF for 18days. We found that the relationships between EROD induction and developmental deformities of embryos showed a various pattern under different exposure scenarios of Phe, Py, and BaP, which suggested possibly different modes of action in determining the developmental toxicities. As for co-exposure scenarios of each PAH combined with ANF, it showed potentially synergistic effects. The inhibited CYP1A mediated enzyme activity by ANF after co-exposure did not effectively alleviate developmental toxicity of embryo. It showed potentially synergistic effects after co-exposure of marine fish embryos to CYP1A inhibitors and PAH-type CYP1A inducers. Heart deformities in the early life stages of marine medaka were recommended as a biomarker for indicating the extent of PAH pollution.

Plastic resin pellets collected from remote islands in the Pacific, Atlantic, and Indian Oceans and the Caribbean Sea were analyzed for polychlorinated biphenyls (PCBs), dichloro-diphenyltrichloroethane and its degradation products (DDTs), and hexachlorocyclohexanes (HCHs). Concentrations of PCBs (sum of 13 congeners) in the pellets were 0.1–9.9ng/g-pellet. These were 1–3 orders of magnitude smaller than those observed in pellets from industrialized coastal shores. Concentrations of DDTs in the pellets were 0.8–4.1ng/g-pellet. HCH concentrations were 0.6–1.7ng/g-pellet, except for 19.3ng/g-pellet on St. Helena, where current use of lindane is likely influence. This study provides background levels of POPs (PCBs<10ng/g-pellet, DDTs<4ng/g-pellet, HCHs<2ng/g-pellet) for International Pellet Watch. Sporadic large concentrations of POPs were found in some pellet samples from remote islands and should be considered in future assessments of pollutants on plastic debris.