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Retrotransposon methylation and activity in wild fish (A. anguilla): A matter of size النص الكامل
2019
Pierron, Fabien | Daffe, Guillemine | Lambert, Patrick | Couture, Patrice | Baudrimont, Magalie
Retrotransposon methylation and activity in wild fish (A. anguilla): A matter of size النص الكامل
2019
Pierron, Fabien | Daffe, Guillemine | Lambert, Patrick | Couture, Patrice | Baudrimont, Magalie
Understanding how organisms cope with global change is a major question in many fields of biology. Mainly, understanding the molecular mechanisms supporting rapid phenotypic changes of organisms in response to stress and linking stress-induced molecular events to adaptive or adverse outcomes at the individual or population levels remain a major challenge in evolutionary biology, ecology or ecotoxicology. In this view, the present study aimed to test (i) whether environmental factors, especially pollutants, can trigger changes in the activity of retrotransposons (RTs) in wild fish and (ii) if changes in RT DNA methylation or transcription levels can be linked to modifications at the individual level. RTs are genetic elements that have the ability to replicate and integrate elsewhere in the genome. Although RTs are mainly quiescent during normal development, they can be experimentally activated under life-threatening conditions, affecting the fitness of their host. Wild eels were collected in four sampling sites presenting differing levels of contamination. The methylation level and the transcriptional activity of two RTs and two genes involved in development and cell differentiation were analyzed in fish liver in addition to the determination of fish contaminants levels and diverse growth and morphometric indices. An up-regulation of RTs associated to lower methylation levels and lower growth indices were observed in highly contaminated fish. Our results suggest that RT activation in fish experiencing stress conditions could have both detrimental and beneficial implications, affecting fish growth but promoting resistance to environmental stressors such as pollutants.
اظهر المزيد [+] اقل [-]Retrotransposon methylation and activity in wild fish (A. anguilla): A matter of size النص الكامل
2019
Pierron, Fabien | Daffe, Guillemine | Lambert, Patrick | Couture, Patrice | Baudrimont, Magalie | Environnements et Paléoenvironnements OCéaniques (EPOC) ; École Pratique des Hautes Études (EPHE) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Bordeaux (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS) | Ecosystèmes aquatiques et changements globaux (UR EABX) ; Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA) | Centre Eau Terre Environnement [Québec] (INRS - ETE) ; Institut National de la Recherche Scientifique [Québec] (INRS) | ANR-16-CE34-0008,TRACE,Effets transgénérationnels des polluants chez les poissons: l'épigénétique et son implication en écotoxicologie(2016)
[Departement_IRSTEA]Eaux [ADD1_IRSTEA]Systèmes aquatiques soumis à des pressions multiples | International audience | Understanding how organisms cope with global change is a major question in many fields of biology. Mainly, understanding the molecular mechanisms supporting rapid phenotypic changes of organisms in response to stress and linking stress-induced molecular events to adaptive or adverse outcomes at the individual or population levels remain a major challenge in evolutionary biology, ecology or ecotoxicology. In this view, the present study aimed to test (i) whether environmental factors, especially pollutants, can trigger changes in the activity of retrotransposons (RTs) in wild fish and (ii) if changes in RT DNA methylation or transcription levels can be linked to modifications at the individual level. RTs are genetic elements that have the ability to replicate and integrate elsewhere in the genome. Although RTs are mainly quiescent during normal development, they can be experimentally activated under life-threatening conditions, affecting the fitness of their host. Wild eels were collected in four sampling sites presenting differing levels of contamination. The methylation level and the transcriptional activity of two RTs and two genes involved in development and cell differentiation were analyzed in fish liver in addition to the determination of fish contaminants levels and diverse growth and morphometric indices. An up-regulation of RTs associated to lower methylation levels and lower growth indices were observed in highly contaminated fish. Our results suggest that RT activation in fish experiencing stress conditions could have both detrimental and beneficial implications, affecting fish growth but promoting resistance to environmental stressors such as pollutants. Retrotransposons could represent interesting environment-sensitive molecular markers allowing to link stress-induced molecular events to adverse outcomes at higher levels.
اظهر المزيد [+] اقل [-]Occurrence, source, and risk assessment of atmospheric parent polycyclic aromatic hydrocarbons in the coastal cities of the Bohai and Yellow Seas, China النص الكامل
2019
Liu, Weijian | Xu, YunSong | Zhao, YongZhi | Liu, Qingyang | Yu, ShuangYu | Liu, Yang | Wang, Xin | Liu, Yu | Tao, Shu | Liu, Wenxin
Parent polycyclic aromatic hydrocarbons (PPAHs) in the ambient air of the coastal cities near the Bohai and Yellow Seas were measured over a full year. The range and geometric average of total PPAH₂₉ (29 species) were 5.16-1.22 × 10³ and 118 ng/m³, respectively, with 77 ± 14% in a gaseous phase. The 16 priority components accounted for 90 ± 4% of the total mass concentration. The incremental life cancer risk (ILCR) via inhalation exposure to the PPAHs (3.17 × 10⁻⁴) was underestimated by 80%, as only the priority PPAHs were considered. The air concentrations of PPAHs in the Bohai Sea area were generally higher (p < 0.01) than those in the Yellow Sea area. A significant increase (p < 0.01) in the levels of PPAHs and large fractions of high molecular weight (HMW) components were observed in winter. Absorption by particulate organic carbon dominated in gas-particle partitioning of the PPAHs, and the seasonal variations in gas-particle partitioning of the low and moderate molecular weight compounds were more noticeable relative to the HMW species. In summer, significantly higher concentrations of PPAHs were found in the daytime than during nighttime, while the opposite case occurred in winter (p < 0.05). The positive matrix factorization (PMF) results indicated greater contributions of coal and biomass combustion to the PPAH emissions in the coastal cities of the Bohai Sea area compared with the Yellow Sea area. The burning of coal and biomass served as the main source of PPAHs in winter, while traffic exhaust was the dominant source in other seasons. The potential source contribution function (PSCF) revealed the important impacts of the external inputs on the local PPAHs via air mass transport. The contributions of the resolved emission sources to the ILCR were clearly different from those of the mass concentrations, indicating the necessity for source-oriented risk assessments.
اظهر المزيد [+] اقل [-]Characteristic concentrations and isotopic composition of airborne lead at urban, rural and remote sites in western Korea النص الكامل
2019
Lee, Sanghee | Shin, Daechol | Han, Changhee | Choi, Kwang-Sik | Hur, Soon Do | Lee, Jooyoung | Byun, Do-Seong | Kim, Young-Taeg | Hong, Sungmin
Anthropogenic Pb emitted from East Asia, particularly China, is often long-range transported to the east by the prevailing westerlies. To characterize the geographical properties of varying atmospheric Pb concentrations by transboundary and domestic source(s)-related Pb in Korea, closely adjacent to China, the Al and Pb concentrations and the stable Pb isotopic composition were determined in the total suspended particles (TSP) collected at urban (IC), rural (TA), and remote background (JJ) sites in western Korea from August 2015 to October 2016. The annual average Pb concentrations were significantly higher in urban and rural areas (IC, 16.2 ng m⁻³ and TA, 11.1 ng m⁻³) than in remote area (JJ, 6.41 ng m⁻³), showing pronounced seasonal variations with relatively higher concentrations in winter and spring and lower concentrations in summer and autumn. Significantly high enrichment factors (EF) for Pb indicate that anthropogenic contributions are important for this toxic element in TSP. Coupling the Pb isotopic signatures with the air mass back trajectories identified the major potential source regions for individual samples. The results show that during winter, China was the dominant contributor, accounting for 92%, 82%, and 100% of the sampling periods at IC, TA, and JJ, respectively. The Chinese contribution decreased in summer and autumn, whereas the Korean contribution increased, according to the East Asian monsoon system. The Pb concentrations increased by 2.2 (IC), 1.2 (TA) and 1.4 (JJ) times when the Chinese contribution was dominant, compared to the Korea-dominant periods. The Pb isotopic systematics for the samples characterized by the dominant Korean contribution differed substantially between the three sites, implying that the relative importance of various domestic sources varied with geographical areas in western Korea.
اظهر المزيد [+] اقل [-]Ten-year regional monitoring of soil-rice grain contamination by heavy metals with implications for target remediation and food safety النص الكامل
2019
He, Mingjiang | Shen, Haoran | Li, Zhangtao | Wang, Lu | Wang, Fan | Zhao, Keli | Liu, Xingmei | Wendroth, Ole | Xu, Jianming
Farmland soil heavy metal contamination could pose potential risks to ecosystems, food safety and human health ultimately. Regional researches on the long-term monitoring of heavy metals in a soil-rice grain system, changed with environmental policy adjustment, have been hindered by limited detailed data. In this study, we collected 169 paired paddy rice grain and corresponding soil samples from a former intensive electronic-waste dismantling region to survey the current status of heavy metal contamination, and to reveal the temporal trends over the past decade based on the previous data obtained in 2006 and 2011. Moderate contaminations of Cd, Cu, Zn and Ni were observed in soil currently. Furthermore, 20.7% of rice grain samples exceeded the Cd threshold value. Cd, Cu, Zn and Pb shared the similar spatial distribution pattern with higher concentrations in northwest, which were contrary to Cr, Ni and As. Risk assessment indicated that much attention is required for the carcinogenic risk of Cr, Cd and As and non-carcinogen risk of Cr. Combining the spatial distribution of heavy metals in soil and rice grains, and the potential ecological risks, with the human health risks, the middle-west rice paddies were identified and proposed as priority areas. Percentage of soil Pb, Cd and Zn decreased in most area and slightly increased in northwest and east. Cu decreased in southwest and increased in central part, while Ni slightly increased in the whole region between 2006 and 2016. With the scrutiny of strict environmental policy, Cd still remained relatively constant levels in soil and rice grains during the last decade, which confirmed that the heavy metals were persisted over the long duration. Target sustainable and ongoing green remediation methods should be adopted urgently in specific area to guarantee food safety and human health for local residents.
اظهر المزيد [+] اقل [-]The impact of lead co-contamination on ecotoxicity and the bacterial community during the bioremediation of total petroleum hydrocarbon-contaminated soils النص الكامل
2019
Khudur, Leadin S. | Shahsavari, Esmaeil | Webster, Grant T. | Nugegoda, Dayanthi | Ball, A. S.
The continued increase in the global demand for oil, which reached 4,488 Mtoe in 2018, leads to large quantities of petroleum products entering the environment posing serious risks to natural ecosystems if left untreated. In this study, we evaluated the impact of co-contamination with lead on the efficacy of two bioremediation processes, natural attenuation and biostimulation of Total Petroleum Hydrocarbons (TPH) as well as the associated toxicity and the changes in the microbial community in contaminated soils. The biostimulated treatment resulted in 96% and 84% reduction in TPH concentration in a single and a co-contamination scenario, respectively, over 28 weeks of a mesocosm study. This reduction was significantly more in comparison to natural attenuation in a single and a co-contamination scenario, which was 56% and 59% respectively. In contrast, a significantly greater reduction in the associated toxicity of in soils undergoing natural attenuation was evident compared with soils undergoing biostimulation despite the lower TPH degradation when bioassays were applied. The earthworm toxicity test showed a decrease of 72% in the naturally attenuated toxicity versus only 62% in the biostimulated treatment of a single contamination scenario. In a co-contamination scenario, toxicity decreased only 30% and 8% after natural attenuation and biostimulation treatments, respectively. 16s rDNA sequence analysis was used to assess the impact of both the co-contamination and the bioremediation treatment. NGS data revealed major bacterial domination by Nocardioides spp., which reached 40% in week 20 of the natural attenuation treatment. In the biostimulated soil samples, more than 50% of the bacterial community was dominated by Alcanivorax spp. in week 12. The presence of Pb in the natural attenuation treatment resulted in an increased abundance of a few Pb-resistant genera such as Sphingopyxis spp. and Thermomonas spp in addition to Nocardioides spp. In contrast, Pb co-contamination completely shifted the bacterial pattern in the stimulated treatment with Pseudomonas spp. comprising approximately 45% of the bacterial profile in week 12. This study confirms the effectiveness of biostimulation over natural attenuation in remediating TPH and TPH-Pb contaminated soils. In addition, the presence of co-contaminants (e.g. Pb) results in serious impacts on the efficacy of bioremediation of TPH in contaminated soils, which must be considered prior to designing any bioremediation strategy.
اظهر المزيد [+] اقل [-]Oxidative stress in the galaxiid fish, Galaxias maculatus, exposed to binary waterborne mixtures of the pro-oxidant cadmium and the anti-oxidant diclofenac النص الكامل
2019
McRae, Nicole K. | Gaw, Sally | Brooks, Bryan W. | Glover, Chris N.
Chemical mixtures represent environmentally-realistic exposures of contaminants to aquatic biota. However, there remains a limited understanding of how toxicant mixtures may impact biological function, relative to their individual components. In the current study, oxidative stress responses of the freshwater galaxiid fish inanga (Galaxias maculatus) were examined following exposure to the pro-oxidant trace metal cadmium (2 or 9 μg L⁻¹), and the anti-oxidant pharmaceutical drug diclofenac (770 μg L⁻¹), individually or in simple binary mixtures. Cadmium exposure in the absence of diclofenac significantly decreased renal catalase activity, increased hepatic catalase activity, decreased renal superoxide dismutase (SOD) and decreased glutathione-S-transferase activity, effects that are suggestive of anti-oxidant defense inhibition and/or generation of increased reactive oxygen species. Diclofenac exposure in the absence of cadmium resulted in a decreased renal lipid peroxidation, consistent with its known anti-oxidant properties. The presence of waterborne diclofenac altered the effects of cadmium on catalase activity in the liver, SOD activity in the gill, and lipid peroxidation in the liver. Co-exposure with cadmium modulated diclofenac effects on lipid peroxidation in the kidney. These data indicate the capacity of each of these toxicants to offset biological effects of the other when both co-occur in urban waters at specific concentrations. This study also demonstrates the complexity of outcomes in contaminant mixtures, even when these stressors are presented as simple binary combinations.
اظهر المزيد [+] اقل [-]Temperature variability and hospitalization for cardiac arrhythmia in Brazil: A nationwide case-crossover study during 2000–2015 النص الكامل
2019
Zhao, Qi | Coelho, Micheline S.Z.S. | Li, Shanshan | Saldiva, Paulo H.N. | Hu, Kejia | Abramson, Michael J. | Huxley, Rachel R. | Guo, Yuming
There is growing recognition of a potential role for environmental and climatic factors in influencing cardiovascular risk. It has been speculated that temperature variability (TV) is a risk factor for cardiac arrhythmia but evidence is limited.To quantify the geographic and demographic variations in the association between TV and hospitalization for cardiac arrhythmia in Brazil during 2000–2015.Data on hospitalization for arrhythmia and weather conditions were collected from 1,814 cities. TV was calculated as the standard deviation of daily maximum and minimum temperatures during exposure days. A time-stratified case-crossover approach was applied to examine the city-specific association between TV and hospitalization for arrhythmia. City-specific estimates were pooled at the national and regional levels using a random-effect meta-analysis. Stratified analyses were conducted by sex, three age-groups (0–64, 65–74 and ≥75 years), and three arrhythmia subtypes (paroxysmal tachycardia, atrial fibrillation and flutter, and other arrhythmias).There were 447,667 arrhythmia-related hospitalizations during 2000–2015. The odds ratio of hospitalization per 1 °C increase in TV peaked on 0–1 days’ exposure [1.012 (95% confidence interval: 1.010–1.015)]. There were no substantial differences in effect estimates of TV₀₋₁ by region, age or sex, except for the non-significant association observed in the north. However, women were more affected by prolonged TV exposure than men. For the three arrhythmias subtypes, only paroxysmal tachycardia and other arrhythmias were sensitive to TV. Assuming a causal relationship, 35,813 (95%CI: 18,302−51,665) cases were attributable to TV₀₋₁ in Brazil during 2000–2015, accounting for 8.0% (95%CI: 4.1–11.5%) of hospitalizations for cardiac arrhythmia.At a population-level exposure to TV was associated with increased risk of arrhythmia-related hospitalization in Brazil, with the relationship equally distributed across most residents but varied by arrhythmia subtypes. Our findings add to the accumulating evidence-base that climatic factors can influence cardiovascular outcomes in populations.
اظهر المزيد [+] اقل [-]Effects of sulfamethoxazole and sulfamethoxazole-degrading bacteria on water quality and microbial communities in milkfish ponds النص الكامل
2019
Chang, Bea-Ven | Chang, Yi-Tang | Chao, Wei-Liang | Yeh, Shinn-Lih | Kuo, Dong-Lin | Yang, Chu-Wen
Intensive farming practices are typically used for aquaculture. To prevent disease outbreaks, antibiotics are often used to reduce pathogenic bacteria in aquaculture animals. However, the effects of antibiotics on water quality and microbial communities in euryhaline fish culture ponds are largely unknown. The aim of this study was to investigate the interactions between sulfamethoxazole (SMX), water quality and microbial communities in milkfish (Chanos chanos) culture ponds. The results of small-scale milkfish pond experiments indicated that the addition of SMX decreased the abundance of ammonia-oxidizing bacteria (AOB), nitrite-oxidizing bacteria (NOB) and photosynthetic bacteria. Consequently, the levels of ammonia and total phosphorus in the fish pond water increased, causing algal and cyanobacterial blooms to occur. In contrast, the addition of the SMX-degrading bacterial strains A12 and L effectively degraded SMX and reduced the levels of ammonia and total phosphorus in fish pond water. Furthermore, the abundances of AOB, NOB and photosynthetic bacteria were restored, and algal and cyanobacterial blooms were inhibited. This study demonstrate the influences of SMX on water quality and microbial community composition in milkfish culture ponds. Moreover, the use of the bacterial strains A12 and L as dual function (bioaugmentation and water quality maintenance) beneficial bacteria was shown to provide an effective approach for the bioremediation of SMX-contaminated euryhaline milkfish culture ponds.
اظهر المزيد [+] اقل [-]Could benthic biofilm analyses be used as a reliable proxy for freshwater environmental health? النص الكامل
2019
Pu, Yang | Ngan, Wing Yui | Yao, Yuan | Habimana, Olivier
The quality of freshwater undoubtedly reflects the health of our surrounding environment, society, and economy, as these are supported by various freshwater ecosystems. Monitoring efforts have therefore been considered a vital means of ensuring the ecological health of freshwater environments. Nevertheless, most aquatic environmental monitoring strategies largely focus on bulk water sampling for analysis of physicochemical and key biological indicators, which for the most part do not consider pollution events that occur at any time between sampling events. Because benthic biofilms are ubiquitous in aquatic environments, pollution released during sporadic events may be absorbed by these biofilms, which can act as repositories of pollutants. The aim of this study was to assess whether benthic biofilm monitoring could provide an efficient way of properly characterizing the extent of pollution in aquatic environments. Here, bulk water and benthic biofilms were sampled from three Hong Kong streams having various pollution profiles, and subsequently compared via high-resolution microscopy, metagenomic analysis, and analytical chemistry. The results indicated that biofilms were, indeed, reservoirs of environmental pollutants, having different profiles compared with that of the corresponding bulk water samples. Moreover, the results also suggested that biofilms sampled in polluted areas were characterized by a higher species richness. While the analytical testing of benthic biofilms still needs further development, the integration of chemical-pollutant profiles and biofilm sequencing data in future studies may provide unique perspectives for understanding and identifying pollution-related biofilm biomarkers.
اظهر المزيد [+] اقل [-]Hydrogeochemical controls on arsenic mobility in an arid inland basin, Southeast of Iran: The role of alkaline conditions and salt water intrusion النص الكامل
2019
Dehbandi, Reza | Abbasnejad, Ahmad | Karimi, Zohreh | Herath, Indika | Bundschuh, Jochen
Elevated inorganic arsenic concentrations in groundwater has become a major public and environmental health concern in different parts of the world. Currently, As-contaminated groundwater issue in many countries and regions is a major topic for publications at global level. However, there are many regions worldwide where the problem has still not been resolved or fully understood due to inadequate hydrogeochemical investigations. Hence, this study evaluates for the first time the hydrogeochemical behavior of the arid and previously unexplored inland basin of Sirjan Plain, south east (SE) Iran, in order to assess the controlling factors which influence arsenic (As) mobility and its distribution through groundwater resources. Total inorganic arsenic concentration was measured using inductive-coupled plasma optical emission spectrometry (ICP-OES). Arsenic content in groundwater of this region ranged between 2.4 and 545.8 μg/L (mean value: 86.6 μg/L) and 50% of the samples exceeded the World Health Organization (WHO) guideline value of 10 μg/L in drinking water. Groundwater was mainly of Na-Cl type and alkaline due to silicate weathering, ion exchange and evaporation in arid conditions. Elevated As concentrations were generally observed under weakly alkaline to alkaline conditions (pH > 7.4). Multivariate statistical analysis including cluster analysis and bi-plot grouped As with pH and HCO3 and demonstrated that the secondary minerals including oxyhydroxides of Fe are the main source of As in groundwater in this region. The desorption of As from these mineral phases occurs under alkaline conditions in oxidizing arid environments thereby leading to high levels of As in groundwater. Moreover, evaporation, ion exchange and saltwater intrusion were the secondary processes accelerating As release and its mobility in groundwater. Based on the results of this study, desorption of As from metal oxy-hydroxides surfaces under alkaline conditions, evaporation and intrusion of As-rich saline water are considered to be the major factors causing As enrichment in arid inland basins such as those in southeast Iran. This study proposes the regular monitoring and proper groundwater management practices to mitigate high levels of arsenic in groundwater and related drinking water wells of Sirjan Plain.
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