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GENETIC AND MORPHOLOGICAL DESCRIPTORS TO ACCESS BRAZILIAN OKRA GENOTYPES DIVERSITY
2022
CARVALHO,FÁBIO JANONI | MENDONÇA,THIAGO FELLIPE NUNES DE | SIQUIEROLI,ANA CAROLINA SILVA | MACIEL,GABRIEL MASCARENHAS | CLEMENTE,ANDRESSA ALVES
ABSTRACT Information of the variation for important morphological and physiological traits of okra is still limited. Molecular analysis is an important additional tool in germplasm characterization studies. The study aimed to evaluate the performance of the growth and yield of 20 pre-commercial okra accessions to identify molecular markers’ association with morphological traits. Nineteen morphological traits were measured with five qualitative and 14 quantitative descriptors. For analysis of genetic patterns Random Amplified Polymorphic DNA (RAPD) markers were used with nine primers and 24 usable bands. The genetic dissimilarity was evaluated based in morphological and genetic matrices. Also, graphical representation of genetic distances was obtained by UPGMA and Tocher’s optimization method. The morphological characterization of the accessions detected polymorphism for all evaluated traits. RAPD markers were efficient in detecting genetic variability among okra accessions. For the primers used in the experiment, only OPE10 did not amplify the DNA strand. The other eight primers produced a total of 35 bands, in which 25 were polymorphic and ten were monomorphic. The morphological traits and molecular markers identified wide genetic variability among the 20 okra accessions, indicating successful crosses in breeding programs and isolating some interesting materials. Morphological and molecular cluster analyses were complementary and helped in the genotype selection. Molecular analysis indicated some divergent accessions that were not found in morphological analysis, which could highlight some materials that have a desirable trait, that is difficult and highly costly to access in field experiments.
اظهر المزيد [+] اقل [-]AMPLIFICATION AND SELECTION PROFILE OF ISSR MARKERS FOR GENETIC STUDIES IN Calotropis procera
2022
DIAS,CIBELLE SANTOS | SANTOS,LUIZ HENRIQUE TOLENTINO | MEIRA,MESSULAN RODRIGUES | SANTOS,ELISA SUSILENE LISBOA DOS | CERQUEIRA-SILVA,CARLOS BERNARD MORENO
ABSTRACT Sodom apple is a plant species adapted to various ecosystems and has stood out for its economic and ecological importance. We evaluated the amplification profile of 23 ISSR primers and selected polymorphic loci for genetic studies of a natural population of Calotropis procera by collecting and extracting genomic DNA from 33 individuals. Genomic DNA was extracted using the sorbitol protocol and 2% CTAB and the ISSR amplification products were resolved by electrophoresis. Based on the amplification profile, the 23 primers were classified as suitable, moderate, and unsuitable. We described the quality of primers considering the total number of bands, mean bands per primer, percentage of polymorphism, Nei’s genetic diversity (expected heterozygosity – He), assuming Hardy-Weinberg equilibrium and the polymorphic information content (PIC). All ISSR primers showed an amplification profile, which generated 173 bands with an average of 7.5 loci per primer. However, only 18 out of the 23 tested primers allowed visible and high-quality amplification, which were classified as suitable and polymorphic. We also observed a mean of 0.30 and 0.24 for PIC and He estimates, respectively. The DiCA3`RG, TriAGA3`RC, and TriCGC3`RC primers were highly transferable to C. procera (they presented quality for amplification with good reproducibility), with PIC values higher than 0.40, He higher than 0.30, and polymorphism higher than 86%.
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