Draft genome of Ompok bimaculatus (Pabda fish)
2019
Ruby Dhar | Karthikeyan Pethusamy | Sunil Singh | Indrani Mukherjee | Ashikh Seethy | Bharoti Sengupta | Tryambak Srivastava | Sajib Sarkar | Vikramjit Mandal | Madhumita Karmakar | Sandipan Gupta | Arpita Ghosh | Subhradip Karmakar
Abstract Objective Pabda (Ompok bimaculatus) is a freshwater catfish, largely available in Asian countries, especially in Bangladesh, India, Pakistan and Nepal. This fish is highly valued for its fabulous taste and high nutritional value and is very popular as a rich source of proteins, omega-3 and omega-6 fatty acids, vitamins and mineral for growing children, pregnant females and elders. We performed de-novo sequencing of Ompok bimaculatus using a hybrid approach and present here a draft assembly for this species for the first time. Data Description The genome of Ompok bimaculatus (Fig. 1: Table 1, Data file 3) from Ganges river, has been sequenced by hybrid approach using Illumina short reads and PacBio long reads followed by structural annotations. The draft genome assembly was found to be 718 Mb with N50 size of 81 kb. MAKER gene annotation tool predicted 21,371 genes.
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