Spatial patterns of bacteria show that members of higher taxa share ecological characteristics
2009
Philippot , Laurent (INRA , Dijon (France). UMR 1229 Microbiologie du Sol et de l'Environnement) | Bru , David (INRA , Dijon (France). UMR 1229 Microbiologie du Sol et de l'Environnement) | Saby , Nicolas (INRA , Ardon (France). US 1106 Unité INFOSOL) | Cuhel , Jiri (University of South BohemiaBiology Centre of the ASCR, Ceské BudejoviceCeske Budejovice(Tchèque (république)). Faculty of Science) | Arrouays , Dominique (INRA , Ardon (France). US 1106 Unité INFOSOL) | Simek , Miloslav (University of South BohemiaBiology Centre of the ASCR, Ceské BudejoviceCeske Budejovice(Tchèque (république)). Faculty of Science) | Hallin , Sara (University of Agricultural Sciences, Uppsala(Suède). Department of Microbiology)
Whether bacteria display spatial patterns of distribution and at which level of taxonomic organisation such patterns can be observed are central questions in microbial ecology. Here we investigated how the total and relative abundances of eight bacterial taxa at the phylum or class level were spatially distributed in a pasture by using quantitative PCR. Geostatistical modelling was used to analyse the spatial patterns of the taxa distributions. To test whether the spatial distributions of the different taxa were related to soil heterogeneity, we performed exploratory analyses of relationships between abundance of the bacterial taxa and key soil properties. The distributions of the relative abundance of most taxa varied by a factor of 2.5 to 6.5 and displayed strong spatial patterns at the field scale with autocorrelation ranging between 2 to 37 m. These spatial patterns were taxon-specific and correlated to soil properties, which indicates that members of a bacterial clade defined at high taxonomical levels shared specific ecological traits in the pasture. Overall, the present study showed spatial patterns of distribution of bacteria both at the meter scale and at high taxonomical levels of organisation. Such spatial patterns allow comprehensive observations and predictions of bacterial occurrence in nature, hence helping in the generation of hypotheses concerning the mechanisms generating and maintaining bacterial diversity. The taxa-specific spatial patterns observed here suggest that, in a given environment, ecological traits are shared at high taxonomic levels within the domain Bacteria. This is a piece of evidence that the 16S rRNA gene tree divisions are not only based on evolutionary theory, but also have an ecological reality.
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