The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
2005
Goldberg, Ilya G | Allan, Chris | Burel, Jean-Marie | Creager, Doug | Falconi, Andrea | Hochheiser, Harry | Johnston, Josiah | Mellen, Jeff | Sorger, Peter K. | Swedlow, Jason R
The Open Microscopy Environment (OME) defines a data model and a software implementation to serve as an informatics framework for imaging in biological microscopy experiments, including representation of acquisition parameters, annotations and image analysis results. OME is designed to support high-content cell-based screening as well as traditional image analysis applications. The OME Data Model, expressed in Extensible Markup Language (XML) and realized in a traditional database, is both extensible and self-describing, allowing it to meet emerging imaging and analysis needs.
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