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Accessing regio- and typo-selectivity of #Yarrowia lipolytica# lipase in its free form and immobilized onto magnetic nanoparticles Full text
2016
Akil E. | Carvalho T. | Baréa B. | Finotelli P. | Lecomte J. | Torres A.G. | Villeneuve P.
Accessing regio- and typo-selectivity of #Yarrowia lipolytica# lipase in its free form and immobilized onto magnetic nanoparticles Full text
2016
Akil E. | Carvalho T. | Baréa B. | Finotelli P. | Lecomte J. | Torres A.G. | Villeneuve P.
The growing interest in lipases is related to its high biotechnological potential. In this work we investigated the regio- and typo-selectivity of extracellular lipase from Yarrowia lipolytica 583 (IMUFRJ 50682) in its free form and immobilized on magnetic nano-sized particles. Results of p-nitrophenyl laurate hydrolysis showed optimal stability of these biocatalysts at pH 6–8 and between 20 and 45 °C. The immobilization of lipase on nano-sized magnetic particles increased thermo and pH stabilities of the enzyme. Both catalysts displayed high hydrolytic activity on triolein and on triacylglycerols in vegetable oils in 5 min. The free lipase showed a strict 1,3-regioselectivity, whereas the immobilized lipase was only slightly 1,3-regioselective, in hydrolysis reactions of triolein and vegetable oils. Both lipases were able to hydrolyze saturated esters, but showed no typo-selectivity for this group. However, the lipases are selective for the hydrolysis of unsaturated esters, especially for 18:2 fatty acids. These results give a better knowledge of this lipase hydrolytic activity, both in the free form and immobilized and widen their potential biotechnological use, especially in the synthesis of structured lipids. (Résumé d'auteur)
Show more [+] Less [-]Accessing regio-and typo-selectivity of Yarrowia lipolytica lipase in its free form and immobilized onto magnetic nanoparticles Full text
2016
Akil, Emília | Carvalho, Tamires | Bárea, Bruno | Finotelli, Priscilla | Lecomte, Jérôme | Torres, Alexandre G. | Amaral, Priscilla | Villeneuve, Pierre
The growing interest in lipases is related to its high biotechnological potential. In this work we investigated the regio- and typo-selectivity of extracellular lipase from Yarrowia lipolytica 583 (IMUFRJ 50682) in its free form and immobilized on magnetic nano-sized particles. Results of p-nitrophenyl laurate hydrolysis showed optimal stability of these biocatalysts at pH 6–8 and between 20 and 45°C. The immobilization of lipase on nano-sized magnetic particles increased thermo and pH stabilities of the enzyme. Both catalysts displayed high hydrolytic activity on triolein and on triacylglycerols in vegetable oils in 5min. The free lipase showed a strict 1,3-regioselectivity, whereas the immobilized lipase was only slightly 1,3-regioselective, in hydrolysis reactions of triolein and vegetable oils. Both lipases were able to hydrolyze saturated esters, but showed no typo-selectivity for this group. However, the lipases are selective for the hydrolysis of unsaturated esters, especially for 18:2 fatty acids. These results give a better knowledge of this lipase hydrolytic activity, both in the free form and immobilized and widen their potential biotechnological use, especially in the synthesis of structured lipids.
Show more [+] Less [-]Evaluation of brewer's spent grain-derived lignocellulosic hydrolysate as a feedstock for amino acid production by submerged fermentation | Evaluation of brewer's spent grain-derived lignocellulosic hydrolysate as a feedstock for amino acid production by submerged fermentation Full text
2023
Karlsen, Freja Manø Busk | Skov, Peter V. | Boccadoro, Catherine | Gaykawad, Sushil
This study evaluated the potential of utilizing a lignocellulosic hydrolysate from brewer’s spent grain (BSG) as a substrate for amino acid (AA) production by submerged fermentation. The main objective was to explore AA production from BSG hydrolysate using selected microorganisms. Initially, different microorganisms were screened for their growth on BSG hydrolysate, and selected microorganisms were further investigated for AA production by cultivation in shake flasks and bioreactor. From this screening, Saccharomyces cerevisiae and Corynebacterium glutamicum were selected. C. glutamicum produced alanine, proline, valine, and glycine in shake flasks and bioreactor. Highest alanine production (193.6 0.09 mg/L) was found in shake flasks after 30 h while production of proline (22.5 1.03 mg/L), valine (34.8 0.11 mg/L), and glycine (18.7 1.30 mg/L) was highest in bioreactor after 4 h (proline and valine) and 8 h (glycine). To enhance AA production by C. glutamicum, a fed-batch fermentation experiment was performed. Except for glycine, no AAs were produced during the fed-batch phase. S. cerevisiae produced alanine, proline, valine, and glutamic acid in shake flask but not in bioreactor. Highest production of alanine (11.8 1.25 mg/L), proline (11.8 1.06 mg/L), and valine (4.94 1.01 mg/L) was obtained after 50 h while glutamic acid production (66.2 0.49 mg/L) peaked after 60 h. This study demonstrates the production of several AAs from BSG by submerged fermentation; however, further optimization is needed to improve the productivity. | publishedVersion
Show more [+] Less [-]A fuzzy logic based diagnosis system for the on-line supervision of an anaerobic digestor pilot-plant Full text
1999
Genovesi, A. | Harmand, Jérôme | Steyer, Jean-Philippe | Laboratoire de Biotechnologie de l'Environnement [Narbonne] (LBE) ; Institut National de la Recherche Agronomique (INRA)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)
International audience
Show more [+] Less [-]Two-phases anaerobic digestion of fruit and vegetable wastes: bioreactors performance Full text
2004
Bouallagui, H. | Torrijos, Michel | Godon, Jean-Jacques | Moletta, Renatto | Ben Cheikh, Ridha | Touhami, Y. | Delgenès, Jean-Philippe | Hamdi, M. | Laboratoire de Biotechnologie de l'Environnement [Narbonne] (LBE) ; Institut National de la Recherche Agronomique (INRA)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)
22 ref. | International audience
Show more [+] Less [-]An experimental study of caseinomacropeptide hydrolysis by trypsin in a continuous membrane reactor Full text
2001
Prata-Vidal, M. | Bouhallab, Said | Henry, G. | Aimar, P. | Laboratoire de recherches de technologie laitière ; Institut National de la Recherche Agronomique (INRA)
International audience
Show more [+] Less [-]Glucosamine measurement as indirect method for biomass estimation of Cunninghamella elegans grown in solide state cultivation conditions Full text
2001
Tomaselli Scotti, C. | Vergoignan, Catherine | Feron, Gilles | Durand, A. | FLAveur, VIsion et Comportement du consommateur (FLAVIC) ; Etablissement National d'Enseignement Supérieur Agronomique de Dijon (ENESAD)-Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)
International audience
Show more [+] Less [-]Modeling the effects of substrate fluctuations on the maintenance rate in bioreactors with a probabilistic approach Full text
2020
Maluta, Francesco | Pigou, Maxime | Montante, Giuseppina | Morchain, Jérôme | Alma Mater Studiorum Università di Bologna = University of Bologna (UNIBO) | Institut de mécanique des fluides de Toulouse (IMFT) ; Université Toulouse III - Paul Sabatier (UT3) ; Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP) ; Université de Toulouse (UT) | Toulouse Biotechnology Institute (TBI) ; Institut National des Sciences Appliquées - Toulouse (INSA Toulouse) ; Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
International audience | A simple interaction by exchange with the mean (IEM) mixing model is implemented to describe the glucose concentration segregations in industrial and laboratory scale bioreactors. This approach is coupled with a population balance model (PBM) for the growth rate adaptation and a metabolic model dependent on the individuals state, both from the literature [1]. The model formulation is validated against different published experiments and it is shown that the IEM model reduces the computational costs when just the segregation of few species is of interest. A model for the maintenance costs of Escherichia coli subject to glucose concentration fluctuation is also presented and implemented in the context of the IEM mixing model. An Eulerian formulation of the effects of the substrate fluctuations on the maintenance rate is proposed and tied to a more intuitive Lagrangian vision. The study of these metabolic changes due to substrate heterogeneities helps the understanding of the relationships between hydrodynamics and cells metabolism and it improves the agreement between numerical and experimental data.
Show more [+] Less [-]Modeling the effects of substrate fluctuations on the maintenance rate in bioreactors with a probabilistic approach Full text
2020
Maluta, Francesco | Pigou, Maxime | Montante, Giuseppina | Morchain, Jérôme | Alma Mater Studiorum Università di Bologna = University of Bologna (UNIBO) | Institut de mécanique des fluides de Toulouse (IMFT) ; Université Toulouse III - Paul Sabatier (UT3) ; Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP) ; Université de Toulouse (UT) | Toulouse Biotechnology Institute (TBI) ; Institut National des Sciences Appliquées - Toulouse (INSA Toulouse) ; Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
International audience | A simple interaction by exchange with the mean (IEM) mixing model is implemented to describe the glucose concentration segregations in industrial and laboratory scale bioreactors. This approach is coupled with a population balance model (PBM) for the growth rate adaptation and a metabolic model dependent on the individuals state, both from the literature [1]. The model formulation is validated against different published experiments and it is shown that the IEM model reduces the computational costs when just the segregation of few species is of interest. A model for the maintenance costs of Escherichia coli subject to glucose concentration fluctuation is also presented and implemented in the context of the IEM mixing model. An Eulerian formulation of the effects of the substrate fluctuations on the maintenance rate is proposed and tied to a more intuitive Lagrangian vision. The study of these metabolic changes due to substrate heterogeneities helps the understanding of the relationships between hydrodynamics and cells metabolism and it improves the agreement between numerical and experimental data.
Show more [+] Less [-]Microbial production of 3-hydroxypropionic acid by acetic acid bacteria: Modeling including the buffering capacity of the biological medium enables prediction of pH and metabolite concentrations Full text
2024
Arana-Agudelo, Pedro | de Fouchécour, Florence | Moussa, Marwen | Athès, Violaine | Lachin, Kevin | Spinnler, Henry Eric | Saulou-Bérion, Claire | Trelea, Ioan-Cristian | Paris-Saclay Food and Bioproduct Engineering (SayFood) ; AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Génie et Microbiologie des Procédés Alimentaires (GMPA) ; Institut National de la Recherche Agronomique (INRA)-AgroParisTech | Agence Nationale de la Recherche (ANR) | ABIES Doctoral School
International audience | A mathematical model of the fed-batch bioconversion of 1,3-propanediol into 3-hydroxypropionic acid using acetic acid bacteria is proposed. The model includes the microbial growth, the oxidation of 1,3-propanediol to 3-hydroxypropionaldehyde followed by a second oxidation reaction to 3-hydroxypropionic acid. The inhibitoryeffect of the total acid concentration upon the biological reactions was considered as well as the effect of pH on bacterial growth. A special attention was paid to make accurate pH predictions as pH is a key parameter that influences the microbial growth and bioconversion and also defines the strategy of downstream processing foracid recovery. The buffering capacity of the complex biological medium was found to change throughout the bioconversion. In addition to describing satisfactorily a set of experiments reported in the literature, the model was successfully used to predict metabolite concentrations and the resulting pH in new operating conditions withfree pH dynamics. A sensitivity analysis was performed to identify the most influential parameters of the model. The proposed model represents a valuable tool for bioprocess design as it describes the detailed kinetics of 1,3- propanediol oxidation to 3-hydroxypropionic acid by acetic acid bacteria in bioreactor. Additionally, the pHprediction is a major feature of this model, which could guide the identification of optimal operating conditions for microbial activity with a simultaneous in-situ recovery process.
Show more [+] Less [-]Integration of metabolomic and transcriptomic profiles of hiPSCs-derived hepatocytes in a microfluidic environment Full text
2020
Danoy, Mathieu | Poulain, Stéphane | Jellali, Rachid | Gilard, Françoise | Kato, Sachi | Plessy, Charles | Kido, Taketomo | Miyajima, Atsushi | Sakai, Yasuyuki | Leclerc, Eric | Laboratory for Integrated Micro Mechatronics Systems (LIMMS) ; University of Tokyo [Tokyo] = Tōkyō teikoku daigaku (UTokyo)-Centre National de la Recherche Scientifique (CNRS) | Centre de Ressources Biologiques - [Nancy] (CRB Nancy) ; Centre Hospitalier Régional Universitaire de Nancy (CHRU Nancy) | Biomécanique et Bioingénierie (BMBI) ; Université de Technologie de Compiègne (UTC)-Centre National de la Recherche Scientifique (CNRS) | Institut des Sciences des Plantes de Paris-Saclay (IPS2 (UMR_9213 / UMR_1403)) ; Université d'Évry-Val-d'Essonne (UEVE)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | RIKEN Center for Life Science Technologies (RIKEN CLST) ; RIKEN - Institute of Physical and Chemical Research [Japon] (RIKEN) | Institut de génétique et biologie moléculaire et cellulaire (IGBMC) ; Université Louis Pasteur - Strasbourg I-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS) | University of Tokyo [Tokyo] = Tōkyō teikoku daigaku (UTokyo) | ANR-16-RHUS-0005,iLite,iLite(2016)
Integration of metabolomic and transcriptomic profiles of hiPSCs-derived hepatocytes in a microfluidic environment Full text
2020
Danoy, Mathieu | Poulain, Stéphane | Jellali, Rachid | Gilard, Françoise | Kato, Sachi | Plessy, Charles | Kido, Taketomo | Miyajima, Atsushi | Sakai, Yasuyuki | Leclerc, Eric | Laboratory for Integrated Micro Mechatronics Systems (LIMMS) ; University of Tokyo [Tokyo] = Tōkyō teikoku daigaku (UTokyo)-Centre National de la Recherche Scientifique (CNRS) | Centre de Ressources Biologiques - [Nancy] (CRB Nancy) ; Centre Hospitalier Régional Universitaire de Nancy (CHRU Nancy) | Biomécanique et Bioingénierie (BMBI) ; Université de Technologie de Compiègne (UTC)-Centre National de la Recherche Scientifique (CNRS) | Institut des Sciences des Plantes de Paris-Saclay (IPS2 (UMR_9213 / UMR_1403)) ; Université d'Évry-Val-d'Essonne (UEVE)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | RIKEN Center for Life Science Technologies (RIKEN CLST) ; RIKEN - Institute of Physical and Chemical Research [Japon] (RIKEN) | Institut de génétique et biologie moléculaire et cellulaire (IGBMC) ; Université Louis Pasteur - Strasbourg I-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS) | University of Tokyo [Tokyo] = Tōkyō teikoku daigaku (UTokyo) | ANR-16-RHUS-0005,iLite,iLite(2016)
International audience | The differentiation of human induced pluripotent stem cells (hiPSCs) into functional hepatocytes has the potential to solve the shortage of human primary liver cells and would be of use in drug screening. In this frame, we developed a hiPSCs maturation strategy in microfluidic biochips, using a liver-on-chip approach, a promising technology mimicking in vivo physiology. Hepato-like tissues differentiated in biochips presented advanced liver features, including ALB and CYP3A4 expressing cells. The metabolomics and transcriptomics profiles of hepato-likes cells differentiated either in biochips or Petri dishes were integrated to compare their functionalities. The multi-omics analysis revealed 41 metabolites and 302 genes differentially expressed. Overall, biochip environment lead to higher degree of hepatic differentiation demonstrated by an increase in the metabolic production of lipids, fatty acids and biliary acids, which was confirmed at the transcriptome level by the modulation of expression for genes involved in related signaling pathways. This observation was correlated with higher production of fructose in biochips, together with down-regulation of genes engaged in glycolysis. In parallel, increased activity of the Krebs cycle, pentose phosphate shuffle, and fatty acid beta oxidation was observed in tissues cultured in Petri. Besides, the modulation of nitrogen metabolism was observed in transcriptomic data and confirmed by an intense production of glutamine, putrescine and creatinine and by the higher consumption of spermidine measured in Petri.
Show more [+] Less [-]Integration of metabolomic and transcriptomic profiles of hiPSCs-derived hepatocytes in a microfluidic environment Full text
2020
Danoy, Mathieu | Poulain, Stephane | Jellali, Rachid | Gilard, Francoise | Kato, Sachi | Plessy, Charles | Kido, Taketomo | Miyajima, Atsushi | Sakai, Yasuyuki | Leclerc, Eric
The differentiation of human induced pluripotent stem cells (hiPSCs) into functional hepatocytes has the potential to solve the shortage of human primary liver cells and would be of use in drug screening. In this frame, we developed a hiPSCs maturation strategy in microfluidic biochips, using a liver-on-chip approach, a promising technology mimicking in vivo physiology. Hepato-like tissues differentiated in biochips presented advanced liver features, including ALB and CYP3A4 expressing cells. The metabolomics and transcriptomics profiles of hepato-likes cells differentiated either in biochips or Petri dishes were integrated to compare their functionalities. The multi-omics analysis revealed 41 metabolites and 302 genes differentially expressed. Overall, biochip environment lead to higher degree of hepatic differentiation demonstrated by an increase in the metabolic production of lipids, fatty acids and biliary acids, which was confirmed at the transcriptome level by the modulation of expression for genes involved in related signaling pathways. This observation was correlated with higher production of fructose in biochips, together with down-regulation of genes engaged in glycolysis. In parallel, increased activity of the Krebs cycle, pentose phosphate shuttle, and fatty acid beta oxidation was observed in tissues cultured in Petri. Besides, the modulation of nitrogen metabolism was observed in transcriptomic data and confirmed by an intense production of glutamine, putrescine and creatinine and by the higher consumption of spermidine measured in Petri.
Show more [+] Less [-]