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Phylogenetic grouping and virulence gene profiles of Escherichia coli isolated from chicken
2017
Ramlan M. | S. Khairani Bejo | Khoo, E. | Roseliza R. | Zunita Z.
Colibacillosis is a disease caused by avian pathogenic E. coli (APEC) and is one of the principle cause of morbidity and mortality in poultry worldwide which is represented by a complex syndrome characterized by multiple organ lesions. This study was carried out to determine phylogenetic grouping and virulenceassociated genes contained by E. coli isolates which is related in causing disease in chicken. E. coli isolates obtained from clinical cases of Veterinary ResearchInstitute were re-identified by conventional methods. Phylogenetic grouping of the isolates was determined by triplex polymerase chain reaction (PCR), and the presence of eight virulence genes were identified by multiplex PCR. A total of 125 E. coli isolates were subjected toanalysis of phylogenetic background and virulence associated genes profiling. Phylogenetic analysis demonstrated that most of the E. coli isolated from chicken in this study belonged to group B1 (36.0%),group D (28.0%), group A (27.2%) and group B2 (8.8%). Multiplex PCR analysis demonstrated that 96 (78.6%) of the E. coli isolates harbored at least one virulencegene, while 29 (23.3%) did not contain any virulence genes tested. The most prevalent virulence genes identified were iss (51.2%), followed by iucD (36.0%),tsh (32.8%), vat (16.0%), astA (13.6%), irp2 (11.2%), papC (9.6%) and the least is cva/cvi gene (0%). None of the isolates harbored more than four virulence genes.Each of phylogenetic groups presented with different combinations of virulence genes, with no specific combinations of virulence genes found to correlate withE. coli phylogroups. None of the E. coli isolates harbored more than four virulence genes, suggesting that E. coli isolates from chicken in this study appear to bederived from commensal strains and may relate to environmental predispose factors especially stress factors in the host to establish infection.
Show more [+] Less [-]Clinico-haemato-biochemical changes in naturally occurring canine babesiosis in Punjab, India
2017
Suresh, Gonde | Sushma, Chhabra | Singla, L. D. | Randhawa, C. S.
A comprehensive study was conducted on the clinical observationsincluding clinical history, physical examination along with haematobiochemical alteration on 41 naturally occurring cases of canine babesiosis from Punjab state, India. Examination of 964 dogs revealed 4.25 percent (41/964) prevalence of the disease including 3.84 percent (37) B. gibsoni and 0.41 percent (4) B. canis infected cases. Clinical and parasitological diagnosis was finally confirmed by polymerase chain reaction. A large variation of clinical anifestations including rare findings of paraplegia, blindness, ocular bleeding, immune mediated haemolytic anaemia (IMHA), ascites and skin lesions were observed among the affected animals. Bloodfilms showed anisocytosis and nucleated erythrocytes indicating regenerative anaemia. Blood parameters of the affected dogs revealed significant decrease in Hb, TEC, PCV and thrombocytes. Significantdecrease in lymphocytes was found in B. gibsoni affected animals. The affected dogs showed significant increase in serum bilirubin, ALT, AKP, BUN and creatinine. Haemato-biochemical observations wereindicative of severity of babesiosis in dogs.
Show more [+] Less [-]Isolation and molecular characterization of Brucella abortus and Brucella melitensis from samples received by the Regional Veterinary Laboratory, Bukit Tengah, Malaysia
2017
Thenamutha M. | Zakiah M. D. | Azizul O. | Maswati M. A.
A study was carried out to report the phylogenetic analysis of Brucella abortus and Brucella melitensisby using molecular techniques from samples submitted to the Regional Veterinary Laboratory, Bukit Tengah.In this study, identification and genetic characterization of Brucella isolated samples using molecular analysis based on IS711 sequence between localisolates and foreign countries accesses in GenBank was done successfully. A total of 31 samples were isolated for Brucella species and then were amplified byPCR, directly sequenced and compared genetically to published sequences which were obtained from GenBank. The most common Brucella species that was found in both bovine (76.5%) and caprine (85.7%) through diagnostic samples in Regional Veterinary Laboratory, Bukit Tengah, was Brucella melitensis. PCR and sequencing were confirmed positive with 76.5% for Brucella melitensis, 23.5% for Brucella abortus and 23.5% for mixed infectionfrom the total of 17 bovine samples. In caprine, the detection of Brucella melintesis and Brucella abortus showed 85.7% and 21.4% respectively meanwhile total mixedinfection showed 21.4%. These clustering between local isolates of Brucella melitensis were phylogenetically related to other Asian countries such as Singapore,Yemen and Saudi Arabia. The Neighbour Joining Analysis clustered the Brucella abortus local isolates for both bovine and caprine were most closely related to India,Iran, Italy and USA. Interestingly, all the isolates within Malaysia have a close relationship (>95%) with the low level of genetic diversity. When local isolates arecompared to GenBank data, it gives an indication on the possible sources of these infections. Eventually, it will improve the import and export policies to controlbrucellosis in Malaysia.
Show more [+] Less [-]Nucleotide sequence and phylogenetic analysis of Goose Parvovirus detected from Pekin Duck
2017
Muhammad R. S. | Leow, B. L. | Basirah M. A. | Syamsiah A. S. | Ong, G. H.
Goose Parvovirus (GPV) also known as Derzy’s disease is aninfectious viral disease of waterfowl which causes serious economic loss in industrial production of geese and Muscovy ducks. In year 2014, Derzy’s disease was detected in Pekin ducks from Sarawak. The affected farm recorded up to 50% mortality, affecting only young ducklings (starting at the age of 3 weeks). Polymerase chainreaction (PCR) from liver samples were performed based on partial region of VP3 gene of GPV, generated amplicon of 801 bp. Sequence analysis showed that the isolate shared 99% sequence similaritywith goose parvovirus strain YBLJ and YZYZ20130304 from China. Phylogeny based on VP3 showed that this isolate is grouped under Asian strains. This is the first report of GPV in Malaysia focusingon the molecular analysis. Notably, this study revealed that GPV not only can be detected from goose and Muscovy but also from Pekin duck.
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