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Whole genome sequence of Brucella melitensisl local isolate from an infected goat in Malaysia
2016
Mohd Mokhtar Arshad | Ramlan Mohamed | Shuhaila Mat Sharani | Hardy Abu Daud | Omer Khazaal Sallou | Mohd Azam Khan Goriman Khan | Hirzahida Mohd. Padil
Brucellosis in goats is mainly caused by the bacterium Brucellamelitensis, which is one of the most important pathogenic species in the world. In Malaysia, the annual prevalence data of brucellosis was recorded in goats and the control strategy of the disease basedon test and cull of infected animals. This strategy has caused huge economic losses to farmers and government alike. Therefore, whole genome sequencing of B. melitensis local strain is essential forimproving the current vaccine. B. melitensis strain VRI 6530/11 wasobtained from veterinary research institute biobank, Ipoh. The strain was submitted for classical identification procedures and the total genomic DNA was extracted by using DNeasy blood and tissue kit(QIAGEN). The concentration and purity of DNA were determined by using agarose gel electrophoresis and spectrophotometer (DNA/RNA) assay respectively. The genome was sequenced by using IlluminaHiSeq platform with insert size ~200 bp. A total of 1.0 Gb data was generated from the sample. More than 95% of sequencing data was retained in the sample after quality filtering, this indicatethe sequencing reads are of high quality. Final assembly had 33 scaffolds with total size ~3.28 Mb, 44 contigs, GC content is 57.25%, N50 is 293,291. A total of 3,238 protein coding genes, 48 tRNAs and 3rRNAs were predicted and over 87% of the genes were functionally annotated. Genome sequencing of a local B. melitensis strain is the first of its kind in Malaysia and work from this study can contribute towards the development of a new effective vaccine for the control ofthe disease in the country.
Show more [+] Less [-]Molecular characterization of fowl adenoviruses isolated from chickens in Malaysia
2021
Faizul Fikri M. Y. | Syamsiah Aini S. | Ong, G. H. | Maizatul Z. | Muhammad Redzuan S. | Mohammad Jiha R. | Leow, B. L.
Recently, Fowl Adenovirus (FAdV) cases have been reported in many countries worldwide. FAdV is a contagious agent associated with inclusion body hepatitis (IBH) and hydropericardium syndrome (HPS) in chickens. It belongs to the Aviadenovirus genus of the family Adenoviridae. The virus is classified into five species (A to E) and further divided into 12 serotypes. Depending on the serotypes, they have diverse characteristics of virus that can either be pathogenic or nonpathogenic strain. From the viewpoint of epidemiological as well as vaccine development, it is very important to detect FAdV strains. Previous studies have been conducted on molecular research, but the continuity of this study in Malaysia has been limited. This study aims to identify the serotype classification of five Malaysian FAdV isolates obtained from field outbreaks during 2017-2019. In this study, polymerase chain reactions (PCR) were conducted based on Hexon gene. Results from the nucleotide sequence analysis discovered that the five isolates showed high similarity with FAdV-8b strains. High bootstrap values in phylogenetic analysis supported the clustering of the Malaysian FAdVs isolates into FAdVs species E. Consequently, the result of this study contributed important information on the epidemiology and culminated in the importance of control strategies against FAdV infection in Malaysia.
Show more [+] Less [-]Effect of Ingelvac CircoFLEX on the mortality rate of a high health status pig herds in Malaysia
2013
Kam, K. Y. | Yong, C. K. | Guo, Y. H.
PCV-2 associated disease and related losses occur commonly in high health status herds. With the advent of PCV-2 vaccines, these losses can be successfully reduced. In this study, there was a significant reduction (48%) in the mortality rate of the vaccinated pigs when
compared to the non-vaccinated pigs. Vaccination was conducted at day 21. In the vaccinated group, mortality was reduced from 5.25 % to 2.73%. This data indicates that the implementation of a PCV2 vaccination program can reduce the mortality rate of high health status pigs in Malaysia.
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