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Diversity and predicted inter- and intra-domain interactions in the Mediterranean Plastisphere Full text
2021
Amaral-Zettler, Linda A. | Ballerini, Tosca | Zettler, Erik R. | Asbun, Alejandro Abdala | Adame, Alvaro | Casotti, Raffaella | Dumontet, Bruno | Donnarumma, Vincenzo | Engelmann, Julia C. | Frère, Laura | Mansui, Jeremy | Philippon, Marion | Pietrelli, Loris | Sighicelli, Maria
Diversity and predicted inter- and intra-domain interactions in the Mediterranean Plastisphere Full text
2021
Amaral-Zettler, Linda A. | Ballerini, Tosca | Zettler, Erik R. | Asbun, Alejandro Abdala | Adame, Alvaro | Casotti, Raffaella | Dumontet, Bruno | Donnarumma, Vincenzo | Engelmann, Julia C. | Frère, Laura | Mansui, Jeremy | Philippon, Marion | Pietrelli, Loris | Sighicelli, Maria
This study investigated the biogeography, the presence and diversity of potentially harmful taxa harbored, and potential interactions between and within bacterial and eukaryotic domains of life on plastic debris in the Mediterranean. Using a combination of high-throughput DNA sequencing (HTS), Causal Network Analysis, and Scanning Electron Microscopy (SEM), we show regional differences and gradients in the Mediterranean microbial communities associated with marine litter, positive causal effects between microbes including between and within domains of life, and how these might impact the marine ecosystems surrounding them. Adjacent seas within the Mediterranean region showed a gradient in the microbial communities on plastic with non-overlapping endpoints (Adriatic and Ligurian Seas). The largest predicted inter-domain effects included positive effects of a novel red-algal Plastisphere member on its potential microbiome community. Freshwater and marine samples housed a diversity of fungi including some related to disease-causing microbes. Algal species related to those responsible for Harmful Blooms (HABs) were also observed on plastic pieces including members of genera not previously reported on Plastic Marine Debris (PMD).
Show more [+] Less [-]Diversity and predicted inter- and intra-domain interactions in the Mediterranean Plastisphere Full text
2021
Amaral-Zettler, Linda A. | Ballerini, Tosca | Zettler, Erik R. | Asbun, Alejandro Abdala | Adame, Alvaro | Casotti, Raffaella | Dumontet, Bruno | Donnarumma, Vincenzo | Engelmann, Julia C. | Frère, Laura | Mansui, Jeremy | Philippon, Marion | Pietrelli, Loris | Sighicelli, Maria | Centre d’Ecologie Fonctionnelle et Evolutive (CEFE) ; Université Paul-Valéry - Montpellier 3 (UPVM)-École Pratique des Hautes Études (EPHE) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [Occitanie])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro ; Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)
International audience
Show more [+] Less [-]Plastisphere in freshwaters: An emerging concern Full text
2021
Barros, Juliana | Seena, Sahadevan
Plastisphere, an ecosystem of microbes thriving on floating plastic debris, has been extensively studied in marine waters since 2013. Currently, very little is known about the freshwater plastisphere. This review seeks to provide a broad insight into the freshwater science of plastisphere in the light of marine plastisphere, including research gaps, suggestions, and rising concerns, which would be of interest to the public, policymakers, and stakeholders. Given that freshwaters are endangered ecosystems, it is imperative to understand the role and impact of plastisphere on freshwaters. Plastic debris, especially microplastics (size <5 mm) in freshwater ecosystems, provide a stable, persistent, and buoyant substrate for microbes. Although current evidence suggests that freshwater environmental conditions and microplastics' physical and chemical properties significantly influence microbial colonisation, its role and integration in the aquatic ecosystems are unknown. Considering that the plastisphere biodiversity is unique, we seek to establish why and how many species co-exist in the plastisphere. Evaluating such fundamental questions should advance our basic understanding of the resilience of plastisphere to the changing environment. Plastisphere microbes, including the pathogenic bacteria, were found in both systems demonstrating their ability to survive on the plastic fragments from one ecosystem to another. A significant concern regarding plastisphere is the potential freshwater dispersal of anthropogenic pollutants and invasive or pathogenic species. Notably, microplastics aggregates may serve as a food source for grazers, which opens the question of the extent to which it can impact freshwater food webs. To gain a thorough understanding of the interplay between microplastics and the biogeochemical cycle, further insight into plastisphere microbes’ functional role is needed. This would shed light on the unconsidered freshwater elemental cycling pathways. Given the complexity and universal nature of the plastisphere, strong interdisciplinary global research initiatives or networks are required to address the emerging concerns of plastisphere in freshwaters.
Show more [+] Less [-]Prokaryotic footprints in urban water ecosystems: A case study of urban landscape ponds in a coastal city, China Full text
2018
Hu, Anyi | Li, Shuang | Zhang, Lanping | Wang, Hongjie | Yang, Jun | Luo, Zhuanxi | Rashid, Azhar | Chen, Shaoqing | Huang, Weixiong | Yu, Chang-Ping
The urban water ecosystems, such as the landscape ponds are commonly considered under the influence of anthropogenic disturbances, which can lead to the deterioration of the water quality. The prokaryotic communities are considered as one of the best indicators of the water quality. However, there are significant gaps in understanding the ecological processes that shape the composition and function of prokaryotic communities in the urban water ecosystems. Here, we investigated the biogeographic distribution of prokaryotic assemblages in water environments including landscape ponds, drinking water reservoirs, influents (IFs) and effluents (EFs) of wastewater treatment plants of a coastal city (Xiamen), China, by using 16S rDNA amplicon sequencing. Our results indicated that the ponds had higher α-diversity of prokaryotic communities than those in the reservoirs, while there were significant variations in the community compositions among ponds, reservoirs, IFs and EFs. Moreover, ponds harbored a significantly higher proportion of sewage- and fecal-indicator taxa than those in the reservoirs, suggesting the occurrence of exogenous pollution in the urban ponds. Null model analysis revealed that dispersal limitation was the main ecological processes resulting in the divergence of prokaryotic community compositions between ponds and other environments, while dispersal limitation and variable selection played an essential role in the formation of unique prokaryotic assemblages in the reservoirs. Function predication analysis demonstrated that the ponds shared more similar functional profiles with IFs or EFs (e.g., chemoheterotrophy, fermentation, chlorate reducers, nitrate reduction and respiration) than the reservoirs, whereas dominance of photoautotrophy was observed in the reservoirs. Overall, this study provides a profound insight of the ecological mechanisms underlying the responses of prokaryotic communities in the urban landscape ponds to the anthropogenic disturbances.
Show more [+] Less [-]Integrated multi-biomarker responses in two dreissenid species following metal and thermal cross-stress Full text
2016
Potet, Marine | Devin, Simon | Pain-Devin, Sandrine | Rousselle, Philippe | Giambérini, Laure
With current global changes, the combination of several stressors such as temperature and contaminants may impact species distribution and ecosystem functioning. In this study, we evaluated the combined impact of two metals (Ni and Cr) with a thermal stress (from 12 to 17 °C) on biomarker responses in two bivalves, Dreissena rostriformis bugensis and Dreissena polymorpha. Biomarkers are informative tools to evaluate exposure and effects of stressors on organisms. The set of 14 biomarkers measured here was representative of both physiologic (filtration activity) and cellular antioxidant and detoxification mechanisms. Our aim was to study the response pattern of both species, and its meaning in terms of invasive potential. The implications for the use of these mussels in environmental monitoring are also discussed. Results evidenced that the two species do not respond to multiple stressors in the same way. Indeed, the effects of contamination on biomarker responses were more marked for D. polymorpha, especially under nickel exposure. While we cannot conclude as to the effect of temperature, invasiveness could be influenced by species sensitivity to contaminants. The physiological and cellular differences between D. polymorpha and D. r. bugensis might also be of concern for environmental risk assessment. The two species present differential bioaccumulation patterns, filtration activity and cellular biomarker responses. If D. polymorpha populations decline, their substitution by D. r. bugensis for biomonitoring or laboratory studies will not be possible without a deeper understanding of biomarker responses of the new invasive.
Show more [+] Less [-]Determining suitable fish to monitor plastic ingestion trends in the Mediterranean Sea Full text
2019
Bray, Laura | Digka, Nikoletta | Tsangaris, Catherine | Camedda, Andrea | Gambaiani, Delphine | de Lucia, Giuseppe Andrea | Matiddi, Marco | Miaud, Claude | Palazzo, Luca | Pérez-del-Olmo, Ana | Raga, Juan Antonio | Silvestri, Cecilia | Kaberi, Helen
Determining suitable fish to monitor plastic ingestion trends in the Mediterranean Sea Full text
2019
Bray, Laura | Digka, Nikoletta | Tsangaris, Catherine | Camedda, Andrea | Gambaiani, Delphine | de Lucia, Giuseppe Andrea | Matiddi, Marco | Miaud, Claude | Palazzo, Luca | Pérez-del-Olmo, Ana | Raga, Juan Antonio | Silvestri, Cecilia | Kaberi, Helen
The presence of marine litter is a complex, yet persistent, threat to the health and biodiversity of the marine environment, and plastic is the most abundant, and ubiquitous type of marine litter. To monitor the level of plastic waste in an area, and the prospect of it entering the food chain, bioindicator species are used extensively throughout Northern European Seas, however due to their distribution ranges many are not applicable to the Mediterranean Sea. Guidance published for the Marine Strategy Framework Directive suggests that the contents of fish stomachs may be analyzed to determine trends of marine plastic ingestion. In order to equate transnational trends in marine plastic ingestion, the use of standardized fish species that widely occur throughout the basin is favoured, however for the Mediterranean Sea, specific species are not listed. Here we propose a methodology to assess how effective Mediterranean fish species, that are known to have ingested marine plastic, are as bioindicators. A new Bioindicator Index (BI) was established by incorporating several parameters considered important for bioindicators. These parameters included species distribution throughout the Mediterranean basin, several life history traits, the commercial value of each species, and the occurrence of marine litter in their gut contents. By collecting existing data for Mediterranean fish, ranked scores were assigned to each trait and an average value (BI value) was calculated for each species. Based on their habitat preferences, Engraulis encrasicolus (pelagic), Boops boops (benthopelagic), three species of Myctophidae (Hygophum benoiti, Myctophum punctatum and Electrona risso) (mesopelagic), Mullus barbatus barbartus (demersal) and Chelidonichthys lucerna (benthic), were identified as currently, the most suitable fish for monitoring the ingestion of marine plastics throughout the Mediterranean basin. The use of standardized indicator species will ensure coherence in the reporting of marine litter ingestion trends throughout the Mediterranean Sea.
Show more [+] Less [-]Determining suitable fish to monitor plastic ingestion trends in the Mediterranean Sea Full text
2019
Bray, Laura | Digka, Nikoletta | Tsangaris, Catherine | Camedda, Andrea | Gambaiani, Delphine | de Lucia, Giuseppe Andrea | Matiddi, Marco | Miaud, Claude | Palazzo, Luca | Pérez-Del-Olmo, Ana | Raga, Juan Antonio | Silvestri, Cecilia | Kaberi, Helen | Centre d’Ecologie Fonctionnelle et Evolutive (CEFE) ; Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [Occitanie])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)
International audience
Show more [+] Less [-]Understanding connectivity of pearl oyster populations within Tuamotu atoll semi-closed lagoons: Cumulative insight from genetics and biophysical modelling approaches Full text
2021
Andréfouët, Serge | Le Gendre, Romain | Thomas, Yoann | Lo-Yat, Alain | Reisser, Céline M.O.
Understanding connectivity of pearl oyster populations within Tuamotu atoll semi-closed lagoons: Cumulative insight from genetics and biophysical modelling approaches Full text
2021
Andréfouët, Serge | Le Gendre, Romain | Thomas, Yoann | Lo-Yat, Alain | Reisser, Céline M.O.
Connectivity affects species demography, (meta)population dynamics, evolution, phylogeny and biogeography. Various methodological approaches are applied to measure connectivity. Biophysical modelling can explore systematically the influence of atmospheric, oceanic and ecological forcing, while genetics measures connectivity patterns within the sampling strategy limit. In the Pacific Ocean pearl farming lagoons, the activity relies on spat collecting of the black lipped pearl oyster Pinctada margaritifera occurring after the larval dispersal phase, which follows spawning from wild or farmed populations. Biophysical 3D modelling and genomic studies have both separately brought insights on within-lagoon connectivity and on the origin of spats. Here, we combined previous genetics results with new realistic biophysical modelling scenarios to elucidate connectivity in Ahe Atoll lagoon. When combined, we identified the weather sequence likely explaining the realized connectivity observations. We discuss the strengths, weaknesses, opportunities and threats of combining these two approaches considering specific pearl farming demographic connectivity questions.
Show more [+] Less [-]The distribution of sediment bacterial community in mangroves across China was governed by geographic location and eutrophication Full text
2019
Tong, Tianli | Li, Ruili | Wu, Sijie | Xie, Shuguang
Bacterial community is an important component of mangrove ecosystem and can participate in the cycling of elements and promote plant growth. However, the biogeographic distribution pattern of mangrove bacterial community and the associated factors remain poorly known. The present study explored the biogeographic distribution of sediment bacterial community in six mangroves across China. At each mangrove, sediments were collected from both Avicennia marina-planted zones and intertidal mudflats. The community abundance, richness, diversity and structure of sediment bacteria differed greatly among mangrove wetlands. Plantation showed a positive influence on sediment bacterial abundance, richness and diversity. Proteobacteria was the largest bacterial phylum in sediments. The biogeographic distribution of bacterial community in mangroves across China was driven by the variables associated with the wetland trophic status as well as other physicochemical factors (e.g., salinity).
Show more [+] Less [-]Global change impacts on large-scale biogeographic patterns of marine organisms on Atlantic oceanic islands Full text
2018
Ávila, Sérgio P. | Cordeiro, Ricardo | Madeira, Patrícia | Silva, Luis | Medeiros, Antonio | Rebelo, Ana C. | Melo, Carlos | Neto, Ana I. | Haroun, Ricardo | Monteiro, António | Rijsdijk, Kenneth | Johnson, Markes E.
Past climate changes provide important clues for advancement of studies on current global change biology. We have tested large-scale biogeographic patterns through four marine groups from twelve Atlantic Ocean archipelagos and searched for patterns between species richness/endemism and littoral area, age, isolation, latitude and mean annual sea-surface temperatures. Species richness is strongly correlated with littoral area. Two reinforcing effects take place during glacial episodes: i) species richness is expected to decrease (in comparison with interglacial periods) due to the local disappearance of sandy/muddy-associated species; ii) because littoral area is minimal during glacial episodes, area per se induces a decrease on species richness (by extirpation/extinction of marine species) as well as affecting speciation rates. Maximum speciation rates are expected to occur during the interglacial periods, whereas immigration rates are expected to be higher at the LGM. Finally, sea-level changes are a paramount factor influencing marine biodiversity of animals and plants living on oceanic islands.
Show more [+] Less [-]Biodiversity hotspot for marine invertebrates around the Dokdo, East Sea, Korea: Ecological checklist revisited Full text
2017
Song, Sung Joon | Park, Jinsoon | Ryu, Jongseong | Rho, Hyun Soo | Kim, Wŏn | Khim, Jong Seong
We extensively reviewed the macrozoobenthos around Dokdo, Korea, by analyzing metadata collected over the past 50years. The Dokdo macrozoobenthos was represented by 578 species belonging to 243 families from 12 phyla, where four major phyla (or classes) collectively accounted for 86% to total. Mollusks, arthropods, and cnidarians were semi-equally occurred in intertidal and subtidal areas, while polychetes dominated the subtidal zone. The northern most region of Dokdo had the greatest biodiversity (173 species). The taxonomic distinctness analysis (delta+) indicated a close association between species by region, although the number of species varied greatly. About half of the species did not occur cross the locations (n=20), indicating strong habitat preferences of Dokdo macrofaunal assemblages. Overall, the diversity of Dokdo was greater than that of Ulleung Island (east coast), but comparable to that of the well-developed tidal flats in the western Korean waters, highlighting its status as a biodiversity hotspot.
Show more [+] Less [-]Productivity and sea surface temperature are correlated with the pelagic larval duration of damselfishes in the Red Sea Full text
2016
Robitzch, Vanessa S.N. | Lozano-Cortés, Diego | Kandler, Nora M. | Salas, Eva | Berumen, Michael L.
We examined the variation of pelagic larval durations (PLDs) among three damselfishes, Dascyllus aruanus, D. marginatus, and D. trimaculatus, which live under the influence of an environmental gradient in the Red Sea. PLDs were significantly correlated with latitude, sea surface temperature (SST), and primary production (CHLA; chlorophyll a concentrations). We find a consistent decrease in PLDs with increasing SST and primary production (CHLA) towards the southern Red Sea among all species. This trend is likely related to higher food availability and increased metabolic rates in that region. We suggest that food availability is a potentially stronger driver of variation in PLD than temperature, especially in highly oligotrophic regions. Additionally, variations in PLDs were particularly high among specimens of D. marginatus, suggesting a stronger response to local environmental differences for endemic species. We also report the first average PLD for this species over a broad geographic range (19.82±2.92days).
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