Fertilizer, though one of the most essential inputs for increasing agricultural production, is a leading cause of nitrous oxide emissions from agriculture, contributing significantly to global warming. Therefore, understanding factors affecting farmers’ use of fertilizers is crucial to develop strategies to improve its efficient use and to minimize its negative impacts. Using data from 2528 households across the Indo-Gangetic Plains in India, Nepal, and Bangladesh, this study examines the factors affecting farmers’ use of organic and inorganic fertilizers for the two most important cereal crops – rice and wheat. Together, these crops provide the bulk of calories consumed in the region. As nitrogen (N) fertilizer is the major source of global warming and other environmental effects, we also examine the factors contributing to its overuse. We applied multiple regression models to understand the factors influencing the use of inorganic fertilizer, Heckman models to understand the likelihood and intensity of organic fertilizer (manure) use, and a probit model to examine the over-use of N fertilizer. Our results indicate that various socio-economic and geographical factors influence the use of organic and inorganic fertilizers in rice and wheat. Across the study sites, N fertilizer over-use is the highest in Haryana (India) and the lowest in Nepal. Across all locations, farmers reported a decline in manure application, concomitant with a lack of awareness of the principles of appropriate fertilizer management that can limit environmental externalities. Educational programs highlighting measures to improving nutrient-use-efficiency and reducing the negative externalities of N fertilizer over-use are proposed to address these problems. | 51480-51496

Both inorganic and organic fertilizers are widely used to increase rice yield. However, these fertilizers are also found to aggravate mercury methylation and methylmercury (MeHg) accumulation in paddy fields. The aim of this study was to reveal the mechanisms of inorganic and organic fertilizers on MeHg accumulation in rice grains, which are not yet well understood. Potting cultures were conducted in which different fertilizers were applied to a paddy soil. The results showed that both inorganic and organic fertilizers increased MeHg concentrations rather than biological accumulation factors (BAFs) of MeHg in mature rice grains. Inorganic fertilizers, especially nitrogen fertilizer, enhanced the bioavailability of mercury and the relative amount Hg-methylating microbes and therefore intensified mercury methylation in paddy soil and MeHg accumulation in rice grains. Unlike inorganic fertilizers, organic matter (OM) in organic fertilizers was the main reason for the increase of MeHg concentrations in rice grains, and it also could immobilize Hg in soil when it was deeply degraded. The enhancement of MeHg concentrations in rice grains induced by inorganic fertilizers (5.18–41.69%) was significantly (p < 0.05) lower than that induced by organic fertilizers (80.49–106.86%). Inorganic fertilizers led to a larger increase (50.39–99.28%) in thousand-kernel weight than MeHg concentrations (5.18–41.69%), resulting in a dilution of MeHg concentrations in mature rice grains. Given the improvement of soil properties by organic fertilizer, increasing the proportion of inorganic fertilizer application may be a better option to alleviate MeHg accumulation in rice grains and guarantee the rice yield in the agricultural production.

The combined application of organic and synthetic nitrogen (N) fertilizers is being widely recommended in China’s vegetable systems to reduce reliance on synthetic N fertilizer. However, the effect of substituting synthetic fertilizer with organic fertilizer on vegetable productivity (yield, N uptake and nitrogen use efficiency) and reactive nitrogen (Nr) losses (N₂O emission, N leaching and NH₃ volatilization) remains unclear. A meta-analysis was performed using peer-reviewed papers published from 2000 to 2019 to comprehensively assess the effects of combined application of organic and synthetic N fertilizers. The results indicate that overall, the vegetable yield, N₂O emission and NH₃ volatilization were not significantly changed, whereas N leaching was reduced by 44.6% and soil organic carbon (SOC) concentration increased by 12.5% compared to synthetic N fertilizer alone. Specifically, when synthetic N substitution rates (SRs) were ≤70%, vegetable yields and SOC concentration were increased by 5.5%–5.6% and 13.1–18.0%, and N leaching was reduced by 41.6%–48.1%. At the high substitution rate (SR>70%), vegetable yield was reduced by 13.6%, N₂O emission was reduced by 14.3%, and SOC concentration increased by 16.4%. Mixed animal-plant sources of organic N preferentially increased vegetable yield and SOC concentration, and reduced N₂O emission and N leaching compared with single sources of organic-N. Greenhouse gas (GHG) emission was decreased by 28.4%–34.9% by combined applications of organic and synthetic N sources, relative to synthetic N fertilizer alone. We conclude that appropriate rates (SR ≤ 70%) of combined applications of organic and synthetic N fertilizers could improve vegetable yields, decrease Nr and GHG emission, and facilitate sustainable development of coupled vegetable-livestock systems.

Concentrations as high as thousands of milligrams per kilogram (dry weight) of nonylphenol (NP), an endocrine-disrupting chemical of great concern, have been reported in soil. Soil is considered one of the primary pathways for exposure of crop plants to NP. However, there have been few studies on the toxicity of soil NP to crop plants, especially with comprehensive consideration of the application of organic fertiliser which is a common agricultural practice. In this study, tomato plants were grown in soils treated with NP in the presence and/or absence of earthworm casts (EWCs). After four weeks, we tested the physiological and biochemical responses (accumulative levels of hydrogen peroxide (H₂O₂) and superoxide anion radicals (O₂-·), total chlorophyll content, degree of membrane lipid peroxidation, activities of defence-related enzymes, and level of DNA damage) and the changes in plant growth (elongation and biomass). The growth inhibition, reactive oxygen species (H₂O₂ and O₂-·) accumulation, decrease in chlorophyll content, increase in activity of defence-related enzymes (including superoxide dismutase, peroxidase, catalase, ascorbate peroxidase, glutathione S-transferase and glutathione reductase), enhancement of membrane lipid peroxidation, and DNA damage in NP-treated seedlings were clearly reversed by the intervention of EWCs. In particular, the suppressed elongation, biomass, and chlorophyll content in tomato plants exposed to NP alone were significantly restored by EWCs to even greater levels than those of the undisturbed control. In other words, EWCs could efficiently invigorate the photosynthesis of crops via up-regulating the chlorophyll content, thereby overwhelming the NP stress on plant growth. Accordingly, except for reducing the bioavailability of soil NP as reported in our previous study, EWCs could also help crop plants to cope with NP stress by strengthening their stress resistance ability. Our findings are of practical significance for the formulation of strategies to relieve the negative effects of soil NP on crop growth.

The human pathogenic bacteria (HPB) in animal feces may disseminate to agricultural soils with their land application as organic fertilizer. However, the knowledge about the impacts of different sources and rates of animal manures on the temporal changes of soil HPB remains limited, which hamper our ability to estimate the potential risks of their land application. Here, we constructed an HPB database including 565 bacterial strains. By blasting the 16 S rRNA gene sequences against the database we explored the occurrence and fate of HPB in soil microcosms treated with two rates of swine, poultry or cattle manures. A total of 30 HPB were detected in all of manure and soil samples. Poultry manure at the high level obviously improved the abundance of soil HPB. The application of swine manure could introduce concomitant HPB into the soils. Of which, Pseudomonas syringae pv. syringae B728a and Escherichia coli APEC O78 may deserve more attention because of their survival for a few days in manured soils and being possible hosts of diverse antibiotic resistance genes (ARGs) as revealed by co-occurrence pattern. Bayesian source tracking analysis showed that the HPB derived from swine manure had a higher contribution to soil pathogenic communities than those from poultry or cattle manures in early days of incubation. Mantel test together with variation partitioning analysis suggested that bacterial community and soil physicochemical properties were the dominant factors determining the profile of HPB and contributed 64.7% of the total variations. Overall, our results provided experimental evidence that application of animal manures could facilitate the potential dissemination of HPB in soil environment, which should arouse sufficient attention in agriculture practice and management to avoid the threat to human health.

Carbon sequestration in agricultural soils is controlled by the balance of added organic residues and microbial oxidation of both residues and native organic matter (OM) as moderated by management and tillage. The PC-based model CQESTR predicts decomposition of residues, organic amendments and soil OM, based on cropping practices. CQESTR uses RUSLE (Revised Universal Soil Loss Equation) crop rotation and management practice, crop production, and operation databases. These data are supplemented with residue nitrogen and soil OM, bulk density, and layer thickness. CQESTR was calibrated with soil carbon data from 70-year-long experiments at the Research Center at Pendleton, OR. The calibrated model provides estimates with a 95% confidence interval of 0.33% OM. Validation at 11 independent sites resulted in a matching of observed with calculated OM with a 95% confidence interval of 0.55% OM. A 12th site, with a history of severe erosion, provided a poor match.

The rapid expansion of organic rice cultivation areas have been accompanied by increased application of organic fertilizers. The high prevalence of soil antibiotic resistance caused by organic fertilizer application poses a severe threat to the agricultural and soil ecosystems. To date, research efforts and understanding of the effects and mechanism of action of the various organic fertilizers on antibiotic resistance in paddy soils remain poorly investigated. Tetracycline resistance genes (TRGs, including tetB, tetC, tetL, tetZ, tetM, tetO, tetT, and tetX), class 1 integron-integrase gene (intI1) and bacterial communities were characterized using quantitative-PCR and Illumina MiSeq sequencing, in paddy soils exposed to inorganic fertilizer (NPK), animal-derived organic fertilizer (AOF, composted swine and/or chicken manure), plant-derived organic fertilizer (POF, rapeseed cake and/or astragalus) and commercial organic fertilizer (COF, composted of animal manure mix with crop residues) applications. Compared with NPK, AOF applications significantly increased the relative abundance of TRGs, which was predominantly expressed in the increase of the relative abundance of tetC, tetM, tetO, tetT, and tetX, while POF and COF had no significant effect on the relative abundance of TRGs. Principal coordinate analysis revealed that AOF and POF significantly altered bacterial communities in paddy soils relative to NPK, while COF had no significant change of bacterial communities. Variation partitioning analysis indicated that soil physicochemical properties were the decisive factors for the changes of TRGs in organic paddy fields. Furthermore, redundancy analysis and the Mantel test showed that TRG profiles in AOF applied paddy soils were strongly influenced by electrical conductivity (EC). Total nitrogen (TN) and organic matter (OM) affected the distribution of TRGs in COF and POF applied paddy soils through a different mechanism. This study provides insights into the impacts of different types of organic fertilizer on the profiles of TRGs in paddy soils.

The incorporation of crop straw with fertilization is beneficial for soil carbon sequestration and cropland fertility improvement. Yet, relatively little is known about how fertilization regulates the emissions of the greenhouse gas nitrous oxide (N₂O) in response to straw incorporation, particularly in soils subjected to long-term fertilization regimes. Herein, the arable soil subjected to a 31-year history of five inorganic or organic fertilizer regimes (unfertilized; chemical fertilizer application, NPK; 200% NPK application, 2 × NPK; manure application, M; NPK plus manure application, NPKM) was incubated with and without rice straw to evaluate how historical fertilization influences the impact of straw addition on N₂O emissions. The results showed that compared to the unfertilized treatment, historical fertilization strongly increased N₂O emissions by 0.48- to 34-fold, resulting from increased contents of hot water-extracted organic carbon (HWEOC), NO₃⁻, and available phosphorus (Olsen-P). Straw addition had little impact on N₂O emission from the unfertilized and NPK treatments, primarily due to Olsen-P limitation. In contrast, straw addition increased N₂O emissions by 102–316% from the 2 × NPK, M, and NPKM treatments as compared to the corresponding straw-unamended treatments. These results indicated that N₂O emissions in response to straw addition were largely regulated by historical fertilization. The N₂O emissions were closely associated with the depletion of NO₃⁻ and decoupled from change in NH₄⁺ content, suggesting that NO₃⁻ was the main substrate for N₂O production upon straw addition. The stoichiometric ratios of HWEOC to mineral N and mineral N to Olsen-P were key factors affecting N₂O emissions, underscoring the importance of resource stoichiometry in regulating N₂O emissions. In conclusion, historical fertilization largely regulated the impacts of crop straw incorporation on N₂O emissions via shifts in NO₃⁻ depletion and the stoichiometry of HWEOC, mineral N, and Olsen-P.

The research was conducted to investigate the accumulation, distribution and availability of Cd in paddy soil and their relation to Cd in rice plants under 30-year fertilization regimes. Six treatments were involved in the study: control without fertilization (CK), chemical fertilizer (NPK), high nitrogen chemical fertilizer (HN), rice straw incorporation (ST), low and high dosage of manure fertilizer (LM and HM). Total and DTPA extractable concentration of Cd (T-Cd and DTPA-Cd) in bulk soils (20 cm topsoil), profiles (0–60 cm) and aggregates (>2, 1–2, 0.5–1, 0.25–0.5, 0.053–0.25 and < 0.053 mm) were investigated. The Cd concentration in relevant rice plant (roots, stems, leaves, husks and grains) were also analyzed. Manure fertilizers caused T-Cd accumulation in bulk soil with a significant increase of 36.2% in LM and 81.2% in HM. Similar impacts of manure fertilizers were observed in DTPA-Cd in the bulk soil. Further, the HM generated a further accumulation in deeper soil layers, presenting a remarkable increase of T-Cd (28.3%–225%) in 10–40 cm and DTPA-Cd (116%–158%) in 10–30 cm profiles. Moreover, the continuous application of manure fertilizers enhanced the availability of Cd in all aggregate size classes with an increase of 17.3%–87.8% in DTPA-Cd. Organic fertilizers (LM, HM and ST) heightened the content of Cd (38.0%–152%) in all parts of rice plant. The accumulation of Cd in rice plants was directly affected by fertilization regimes and Cd availability in the 10–20 cm soil layers and 0.25–0.5 mm aggregates. In conclusion, long-term application of manures resulted in increasing availability of Cd in aggregates and in topsoil and subsoil layers, which accordingly enhanced the accumulation of Cd in rice plants.

Organic fertilizers, such as digestates and manure, are increasingly applied in agricultural systems because of the benefits they provide in terms of plant nutrients and soil quality. However, there are few investigations of N₂O emissions following digestate application to agricultural soils using process-based models. In this study, we modified the UK-DNDC model to include digestate applications to soils by adding digestate properties to the model and considering the effect of organic fertilizer pH. Using the modified model, N₂O emissions were simulated from two organic fertilizers (digested food waste and livestock slurry) applied to three farms in the United Kingdom: one growing winter wheat at Wensum (WE) and two grasslands at Pwllpeiran (PW) and North Wyke (NW). The annual cumulative gross (i.e. not excluding control emission) N₂O emissions were calculated using MATLAB trapezoidal numerical integration. The relative errors of the modeled annual cumulative emissions to the measured emissions ranged from −5.4% to 48%. Two-factor models, including linear, exponential and hyperbola responses, correlating total N loading and soil clay content to calculations of N₂O emissions and N₂O emission factors (EFs) were developed for calculations of emission fluxes and EFs. The squares of the correlation coefficients of the measured and two-factor linear modeled emissions were 0.998 and 0.999 for digestate and slurry, respectively, and the corresponding squares of correlation coefficients of the EFs were 0.998 and 0.938. The two-factor linear model also predicted that the EFs increased linearly with decreasing clay content and the maximum EFs for digestate and slurry were 0.95 and 0.76% of total N applied, respectively. This demonstrates that the modified UK_DNDC is a good tool to simulate N₂O emission from digestate and slurry and to calculate UK EFs using TIER 3 methodology..