Derelict mines pose potential risks to environmental health. Several factors such as soil structure, organic matter, and nutrient content are the greatly affected qualities in mined soils. Soil microbial communities are an important element for successful reclamation because of their major role in nutrient cycling, plant establishment, geochemical transformations, and soil formation. Yet, microorganisms generally remain an undervalued asset in mined sites. The microbial diversity in derelict mine sites consists of diverse species belonging to four key phyla: Proteobacteria, Acidobacteria, Firmicutes, and Bacteroidetes. The activity of plant symbiotic microorganisms including root-colonizing rhizobacteria and ectomycorrhizal fungi of existing vegetation in the mined sites is very high since most of these microbes are extremophiles. This review outlines the importance of microorganisms to soil health and the rehabilitation of derelict mines and how microbial activity and diversity can be exploited to better plan the soil rehabilitation. Besides highlighting the major breakthroughs in the application of microorganisms for mined site reclamation, we provide a critical view on plant−microbiome interactions to improve revegetation at the mined sites. Also, the need has been emphasized for deciphering the molecular mechanisms of adaptation and resistance of rhizosphere and non-rhizosphere microbes in abandoned mine sites, understanding their role in remediation, and subsequent harnessing of their potential to pave the way in future rehabilitation strategies for mined sites.

Plant establishment, presence of arbuscular mycorrhizal fungi (AMF) and other rhizospheric fungi were studied in mine wastes from Zimapan, Hidalgo state, Mexico, using a holistic approach. Two long-term afforested and three non-afforested mine tailings were included in this research. Fifty-six plant species belonging to 29 families were successfully established on the afforested sites, while unmanaged tailings had only a few native plant species colonizing the surrounding soils. Almost all plant roots collected were associated to AMF in these sites. The genus Glomus was the most abundant AMF species found in their rhizosphere; however, the Acaulospora genus was also observed. Other rhizospheric fungi were identified by 18S rDNA sequencing analysis. Their role in these substrates, i.e. biocontrol, pollutant- and organic matter-degradation, and aides that increase plant metal tolerance is discussed. Our results advance the understanding of fungal diversity in sites polluted with metals and present alternative plants for remediation use.

Phytomanagement in terms of phytostabilisation is considered a suitable method to decrease environmental risks of metal(loid) enriched mine tailings. The goal of this study was to identify plant-favourable edaphic niches in mine tailings from a semiarid area, in order to obtain relevant information for further phytostabilisation procedures. For this purpose, a transect-designed sampling from non-disturbed soils to two mine tailings was performed, including the description of soil and plant ecology gradients. Plant ecological indicators showed several stages in plant succession: from weeds to stable patches of late successional plant species. PCA results revealed that plant distribution at the tailings was driven mainly by salinity while metal(loid) concentrations played a minor role. The presence of soil desiccation cracks generated low salinity patches which facilitated favourable niches for plant establishment. Edaphic-patch distribution may condition phytostabilisation since ploughing or the employment of certain amendments should take into account favourable niches for plant growth.

This study firstly quantified the responses of seeds of Zostera marina to different planting times (22 September, 5 October, 23 October, 7 November and 20 November in 2015) through a field seed-planting experiment over a two year period. The suitable seed planting time required by the seeds of Z. marina was evaluated. The seedling establishment rate of Z. marina subjected to different planting times ranged from 7% to 55%, with the higher values attained on the treatments of 22 September and 5 October. New plant patches from seed were fully developed and well maintained on the planting time of 22 September, 5 October and 23 October after 2 years following planting. The shoot density under the three treatments ranged from 62 shoots per replicate to 72 shoots per replicate with an average of 67 shoots per replicate in September 2017. According to the propagation assessment and growth analysis, we found that the planting time from mid-September to mid-October may be the optimal time to plant seeds of Z. marina in our experimental site. Our results demonstrate that seed planting time has an important effect on the effectiveness of eelgrass restoration and provide data that could prove helpful in the development of successful eelgrass restoration.

As typical submerged aquatic vegetation, Ruppia species are facing population reductions due to anthropogenic impacts. In this study, we investigated the effects of temperature and salinity on seed germination and seedling establishment of Ruppia sinensis seeds collected from northern China. The effects of seven salinities (0–50) and six water temperatures (0–30°C) on seed germination were investigated to identify the environmental conditions that could potentially limit survival and growth. We found that: 1) optimum seed germination was salinity 5 at 30°C; 2) high salinity (salinity 40–50) and low temperature (0°C) significantly inhibited seed germination; 3) seed germination with increasing temperature showed a bimodal pattern at suitable salinities (5–10); 4) storing seeds at high salinities (40–50) or low temperature (0°C) promoted germination after transferal to optimal germination conditions. These findings may serve as useful information for R. sinensis habitat establishment and restoration programs.

Arthrocnemum macrostachyum is a halophyte naturally growing in southwest coasts of Spain that can tolerate and accumulate heavy metals. A total of 48 bacteria (30 endophytes and 18 from the rhizosphere) were isolated from A. macrostachyum growing in the Odiel River marshes, an ecosystem with high levels of contamination. All the isolates exhibited plant-growth-promoting (PGP) properties and most of them were multiresistant to heavy metals. Although the presence of heavy metals reduced the capability of the isolates to exhibit PGP properties, several strains were able to maintain their properties or even enhance them in the presence of concrete metals. Two bacterial consortia with the best-performing endophytic or rhizospheric strains were selected for further experiments. Bacterial inoculation accelerated germination of A. macrostachyum seeds in both the absence and presence of heavy metals. These results suggest that inoculation of A. macrostachyum with the selected bacteria could ameliorate plant establishment and growth in contaminated marshes.

Seed germination and seedling establishment are very sensitive plant stages to metal pollution. Many halophyte species colonizing salt marshes are able to germinate and establish in highly contaminated habitats and low marsh halophyte species seem to show higher tolerance to metals than high marsh species. We analyzed the effects of copper, zinc and nickel in concentrations up to 2000 μM on seed germination and seedling growth in two closely related species of Sarcocornia, S. perennis, a low marsh species, and S. fruticosa, a high marsh species. Germination of both halophytes was not affected by any metal concentration, and their seedling growth, mainly radicle length, was reduced by increasing metal concentrations. Seedlings of S. perennis showed higher tolerance to the three metals than those of S. fruticosa. Our results are useful for designing ecotoxicological bioassays and planning phytoremediation projects in salt marshes.

Seed germination and seedling establishment are the stages most sensitive to abiotic stress in the plant life cycle. We analyzed the effects of copper, zinc and nickel on seed germination and early seedling growth of native Spartina maritima and invasive S. densiflora from polluted and non-polluted estuaries. Germination percentages for either species were not affected by any metal at any tested concentration (up to 2000 μM). However, the increase in metal concentration had negative effects on S. densiflora seedlings. The primary effect was on radicle development, representing initial seedling emergence. Spartina densiflora seedlings emerging from seeds from Tinto Estuary, characterized by high bioavailable metal loads, showed higher tolerance to metals than those from less polluted Odiel and Piedras Estuaries. Comparing our results to metal concentrations in the field, we expect S. densiflora seedling development would be negatively impacted in the most metal-polluted areas in Odiel and Tinto Estuaries.

Mangroves are highly susceptible to oil exposure. Depending on the severity, oil exposure can result in initial defoliation and eventual recovery through to mass mortality and complete loss of habitat. Some aspects of the impact of oil on mangroves and their recovery are well studied, but the focus has been on short-term responses, and the understanding of the longer-term trajectory of mangrove recovery from oiling is very limited. Here, we combine field results from sampling in the two years following a significant oiling event, with analysis of canopy cover in aerial images from before the event to 26 years afterwards. Approximately 100 ha of a monospecific stand of Avicenna marina mangroves were oiled as a result of a spill from the Era tanker in Spencer Gulf in southern Australia in September 1992. While lightly oiled trees made a full recovery, trees in heavily oiled areas experienced mass defoliation and ultimately mortality within several months of the oiling event. An analysis of aerial images indicated that there was no recovery in heavily oiled areas for 10 years following the oiling event. Between 10 and 25 years, seedling establishment and growth saw canopy cover increase to 35% of pre-oiling cover within heavily oiled areas. Predictive modelling estimates that complete recovery of mangroves to pre-oiling cover will take 55 years (median prediction in 2047). Our findings indicate that although mangroves can recover following a heavy oiling event, the rate of recovery can be slow, with full recovery in the order of half a century, much longer than has previously been anticipated.

Seagrass meadows are recognized as critical and among the most vulnerable habitats on the planet. As a worldwide concern, there is an urgent need to develop techniques to restore and preserve these vital coastal ecosystems due to their alarming decline rate. To effectively preserve and restore seagrasses, more research is required on the germination ecology of seeds. The seagrass Zostera japonica Asch. & Graebn is an endangered species in its native range, the Northwestern Pacific Coast. The present study investigated the germination and seedling establishment in Z. japonica seeds (collected from northern China) under different temperature and salinity conditions to explore suitable seed germination and establishment conditions, as well as the seedling formation process. Results showed that salinity had a more significant influence on seed germination rate. Germination rate decreased with an increase in salinity, and seeds did not germinate when salinity was higher than 40 psu. Temperature was more likely to influence germination speed, which increased with an increase in temperature, with high germination rates and the most rapid germination speed observed at 30 °C. Therefore, the optimal culture conditions were 10 psu salinity at 30 °C for germination and 10–20 psu salinity at 20 °C for seedling establishment, with a seed germination rate of 45.6% after 6 days of germination culture and a seedling establishment rate of 14.3% after 6 days of seedling culture, respectively. A new seedling raising method with low salinity (5 psu) germination and high salinity (20 psu) seedling establishment was proposed and a flow chart of seedling formation of Z. japonica was created. The results provide insight into the seed germination and seedling establishment in Z. japonica, and will facilitate future large-scale seedling culture and field restoration activities for this seagrass species.