International audience | At the global scale, urban agriculture is increasingly developing in cities due to demographic growth and sustainable food concerns. But, urban soils are frequently polluted with metals. In urban gardens, organic matter is also commonly added both to valorize organic household waste and to promote biophysicochemical fertility. As earthworms promote the decomposition and the recycling of soil organic matter, they can also influence the biogeochemical cycle of metals in urban polluted soils. In order to produce safe vegetables in urban areas, it is crucial to highlight the mechanisms involved in complex soil-earthworm-plant ecosystems. An experiment was set up to examine these relationships using lettuce cultivated in controlled conditions with RHIZOtest® devices. Thanks to the RHIZOtest® devices, metal transfer and bioaccessibility were for the first time compared for urban polluted soil without (1-urban soil polluted with Pb, Cd, Cu, and Zn: essential or toxic metals currently found in environment, SNB) and with bioturbation (2-this metal-polluted soil subjected to earthworm bioturbation, SB) and earthworm casts (3-earthworm casts produced in this polluted soil and naturally enriched in organic matter and microorganisms, T). Metal concentration, phytoavailability, and human gastric bioaccessibility were determined in the different samples. Results showed that earthworm bioturbation increased the phytoavailability of all the metals. For the experimental condition SB, the phytoavailability of metals was increased up to 75% compared to SNB. In addition, surprisingly, metal phytoavailability was always superior in SB compared to earthworm casts (T). Moreover, earthworms led to an increase in Zn gastric bioaccessibility up to 10% in the soils in the same way as for phytoavailability, meaning Zn bioaccessibility in SB > T > SNB, whereas it remained unchanged in the lettuces. These data are important to promote sustainable agriculture activities in urban areas; actually, databases concerning different experimental conditions are needed to develop decision support tools.

International audience | At the global scale, urban agriculture is increasingly developing in cities due to demographic growth and sustainable food concerns. But, urban soils are frequently polluted with metals. In urban gardens, organic matter is also commonly added both to valorize organic household waste and to promote biophysicochemical fertility. As earthworms promote the decomposition and the recycling of soil organic matter, they can also influence the biogeochemical cycle of metals in urban polluted soils. In order to produce safe vegetables in urban areas, it is crucial to highlight the mechanisms involved in complex soil-earthworm-plant ecosystems. An experiment was set up to examine these relationships using lettuce cultivated in controlled conditions with RHIZOtest® devices. Thanks to the RHIZOtest® devices, metal transfer and bioaccessibility were for the first time compared for urban polluted soil without (1-urban soil polluted with Pb, Cd, Cu, and Zn: essential or toxic metals currently found in environment, SNB) and with bioturbation (2-this metal-polluted soil subjected to earthworm bioturbation, SB) and earthworm casts (3-earthworm casts produced in this polluted soil and naturally enriched in organic matter and microorganisms, T). Metal concentration, phytoavailability, and human gastric bioaccessibility were determined in the different samples. Results showed that earthworm bioturbation increased the phytoavailability of all the metals. For the experimental condition SB, the phytoavailability of metals was increased up to 75% compared to SNB. In addition, surprisingly, metal phytoavailability was always superior in SB compared to earthworm casts (T). Moreover, earthworms led to an increase in Zn gastric bioaccessibility up to 10% in the soils in the same way as for phytoavailability, meaning Zn bioaccessibility in SB > T > SNB, whereas it remained unchanged in the lettuces. These data are important to promote sustainable agriculture activities in urban areas; actually, databases concerning different experimental conditions are needed to develop decision support tools.

Since the fifties, organochlorine pesticides (OCPs) had been used in agriculture to protect vegetables. Two decades after their ban by the Stockholm convention in 2001, OCPs are still present in agricultural soils inducing vegetable contamination with concentrations above Maximum Residue Level (MRL). This is a major concern for a 5 km² peri-urban vegetable growing valley located in the south west of France. In the present work, the sampling method was developed to clarify the spatial distribution of one OCP, Dieldrin, and its relationship with soil properties at the scale of study area. A total of 99 soil samples was collected for physicochemical analyses and Dieldrin concentrations. Results show Dieldrin concentrations in soils up to 204 μg kg⁻¹. The horizontal distribution of this pesticide is heterogeneous at the study area scale but homogeneous in each reference plot studied. About 85% of the contamination was located in the top soil layers (0–40 cm depth), but Dieldrin may still be quantified at a depth of 80 cm. Among all soil physicochemical parameters analysed, SOM was the most significantly related (P < 10⁻⁴) with Dieldrin concentrations, once different grain size fractions were considered. Moreover, results indicate a 33 times higher Dieldrin concentration and/or extractability for coarse sand than for other grain size fractions. These results show that the developed sampling method is adapted for the study area scale as it helps understanding the factors influencing the spatial distribution of Dieldrin. Historical amendments are the predominant factor for the horizontal contamination and deep ploughing for the vertical contamination. Also, the variations of coarse sand repartition in soils prevents identification of relationships between SOM and Dieldrin contamination in bulk soil. Further investigation is required to explain these relationships but these results highlight why no clear relationship between OCPs and SOM was previously identified.

There must be some uncertainty in the remediation areas delineated based on limited sample points, and resampling in the high-uncertainty areas is particularly necessary. In situ field portable X-ray fluorescence spectrometry (FPXRF), a rapid and cheap analysis method for soil heavy metals, is strongly affected by many spatially non-stationary soil factors. This study first delineated the high-uncertainty area (threshold-exceeding probabilities (PTE) between 30% and 70%) of soil Pb based on the 1000 realizations produced by sequential Gaussian simulation (SGS) with 93 ICP-MS Pb concentrations measured in a peri-urban agriculture area, China. Next, in situ FPXRF was used to increase sample density in this high-uncertainty area. Then, robust geographically weighted regression (RGWR) was used to correct the in situ FPXRF Pb, and the correction accuracies of RGWR, basic GWR, and traditionally-used ordinary least squares regression (OLSR) were compared. Finally, to explore the best way to combine these corrected in situ FPXRF concentrations in delineating the remediation area, we compared the following spatial simulation methods: basic SGS, sequential Gaussian co-simulation (CoSGS) with the RGWR-corrected in situ FPXRF Pb as auxiliary soft data (CoSGS-CorFPXRF), and SGS with the RGWR-corrected in situ FPXRF Pb as part of hard data (SGS-CorFPXRF). Results showed that (i) RGWR produced higher correction accuracy (RI = 71.5%) than GWR (RI = 59.68%) and OLSR (RI = 25.58%) for the in situ FPXRF Pb; (ii) SGS-CorFPXRF produced less uncertainty (G = 0.97) than CoSGS-CorFPXRF (G = 0.95) and SGS (G = 0.91) in the spatial simulation; (iii) High-uncertainty area (30%<PTE<70%) was reduced from 36.55% to 8.7% of the whole study area. It is concluded that the recommended methods are cost-effective to reduce the uncertainty in delineating the remediation areas of soil heavy metals.

A comparative study was conducted to (1) assess the potential of raw sewage used for urban agriculture to disseminate bacterial resistance in two cities of different size in Cameroon (Central Africa) and (2) compare the outcome with data obtained in Burkina Faso (West Africa). In each city, raw sewage samples were sampled from open-air canals in three neighbourhoods. After DNA extraction, the microbial population structure and function, presence of pathogens, antibiotic resistance genes and Enterobacteriaceae plasmids replicons were analysed using whole genome shotgun sequencing and bioinformatics. Forty-three pathogen-specific virulenc e factor genes were detected in the sewage. Eighteen different incompatibility groups of Enterobacteriaceae plasmid replicon types (ColE, A/C, B/O/K/Z, FIA, FIB, FIC, FII, H, I, N, P, Q, R, T, U, W, X, and Y) implicated in the spread of drug-resistance genes were present in the sewage samples. One hundred thirty-six antibiotic resistance genes commonly associated with MDR plasmid carriage were identified in both cities. Enterobacteriaceae plasmid replicons and ARGs found in Burkina Faso wastewaters were also present in Cameroon waters. The abundance of Enterobacteriaceae, plasmid replicons and antibiotic resistance genes was greater in Yaounde, the city with the greater population.In conclusion, the clinically relevant environmental resistome found in raw sewage used for urban agriculture is common in West and Central Africa. The size of the city impacts on the abundance of drug-resistant genes in the raw sewage while ESBL gene abundance is related to the prevalence of Enterobacteriaceae along with plasmid Enterobacteriaceae abundance associated to faecal pollution.

Urban agriculture plays an important role in sustainable food supply. However, because of the atmospheric pollution and soil contamination associated with urban areas, this activity may be of concern. In fact, contamination of soil with metals and the transference of contaminants to vegetables can represent health and safety risks associated with urban agriculture. The objective of this study was to evaluate the concentrations of selected trace metals (cadmium, copper and lead) in three lettuce cultivars produced in three different urban gardens in the metropolitan region of Belo Horizonte, Brazil and their respective soils. Samples of lettuce and soil were analyzed by inductively coupled plasma mass spectrometry (ICP-MS) and graphite furnace atomic absorption spectrometry (AAS-GF), respectively, and their transfer coefficients were calculated. The methods were optimized and were fit for the purpose. Copper was the prevalent metal found in soils and lettuce, with an average of 27.9 ± 13.9 and 0.608 ± 0.157 mg kg⁻¹ respectively, followed by lead (19.4 ± 7.7 and 0.037 ± 0.039 mg kg⁻¹), and cadmium (0.16 ± 0.03 and 0.009 ± 0.005 mg kg⁻¹). Cadmium presented the largest transfer coefficients, ranging from 0.34 to 1.84 with an average of 0.92 ± 0.45, which may indicate a potential risk of accumulation in vegetables in the case of high soil contamination. A significant positive correlation was observed (p < 0.01) between cadmium in lettuce and in soil. Even though lead concentrations varied in the soils from the different urban areas, ranging from 11.88 to 30.01 mg kg⁻¹, no significant difference (p < 0.05) was found among the lettuce, probably due to its low mobility (transfer coefficient = 0.02). The copper and cadmium levels found in lettuce indicate safe lettuce production in the three urban gardens.

The usage of inadequately processed industrial waste water (WW) can lead to strong soil alkalinity and soil salinization of agricultural fields with negative consequences on soil properties and biota. Gypsum as a soil amendment to saline-sodic soils is widely used in agricultural fields to improve their soil physical, chemical and hence biological properties. This study aimed at analysing the effects of intensive WW irrigation on the structure and composition of soil-dwelling arthropods on spinach fields (Spinacia oleracea L.) in a West African urban vegetable production system. We used gypsum as a soil amendment with the potential to alleviate soil chemical stress resulting in a potentially positive impact on soil arthropods. A total of 32 plots were established that showed a gradient in soil pH ranging from slight to strong soil alkalinity and that were irrigated with WW (n = 12) or clean water (CW; n = 20), including eight plots into which gypsum was incorporated. Our study revealed a high tolerance of soil-dwelling arthropods for alkaline soils, but spinach fields with increased soil electrical conductivity (EC) showed a reduced abundance of Hymenoptera, Diptera and Auchenorrhyncha. Arthropod abundance was positively related to a dense spinach cover that in turn was not affected by WW irrigation or soil properties. Gypsum application reduced soil pH but increased soil EC. WW irrigation and related soil pH affected arthropod composition in the investigated spinach fields which may lead to negative effects on agronomical important arthropod groups such as pollinators and predators.

The rapid urbanisation of many cities in south and south-east Asia has increased the demand for bricks, which are typically supplied from brick kilns in peri-urban areas. We report visible foliar damage to mango, apricot and plum trees in the vicinity of traditional Bull’s Trench brick kilns in Peshawar, Pakistan. Visible injury symptoms, hydrogen fluoride concentrations in air, and foliar fluoride concentrations were all greater in the vicinity of brick kilns than at more distant sites, indicating that fluoride emissions from brick kilns were the main cause of damage. Interviews with local farmers established the significant impact of this damage on their livelihoods. Since poorly regulated brick kilns are often found close to important peri-urban agricultural areas, we suggest that this may be a growing but unrecognised environmental problem in regions of Asia where emission control in brick kilns has not been improved.

Concentrations of potentially toxic elements were measured in soils and five contrasting tropical leafy vegetables grown in a replicated field trial at five contaminated urban agriculture sites in Kampala City, Uganda. Soil contamination at each site could be tentatively ascribed to known waste disposal practices. There was considerable variation in metal uptake between vegetable types. Washing leafy vegetables reduced chromium and lead concentrations but exogenous contamination of leaves also depended on vegetable type, with Gynandropsis gynandra L. showing a marked tendency to accumulate Pb and Cr. For the worst case scenario of children consuming unwashed vegetables, some metal ‘hazard quotient’ (HQ) limits (1.0) were violated at four of the five sites studied. For the 25 ‘site-vegetable’ combinations assessed, the HQ for Pb exceeded 1.0 in 36% of cases. A vegetable-specific site screening tool based on soil extraction with 0.01M CaCl₂ and extrapolation to provide HQ values was assessed.

Trace metal uptake was measured for tropical and temperate leafy vegetables grown on soil from an urban sewage disposal farm in the UK. Twenty-four leafy vegetables from East Africa and the UK were assessed and the five vegetable types that showed the greatest Cd concentrations were grown on eight soils differing in the severity of contamination, pH and other physico-chemical properties. The range of Cd concentrations in the edible shoots was greater for tropical vegetables than for temperate types. Metal uptake was modelled as a function of (i) total soil metal concentration, (ii) CaCl₂-soluble metal, (iii) soil solution concentration and (iv) the activity of metal ions in soil pore water. Tropical vegetables were not satisfactorily modelled as a single generic ‘green vegetable’, suggesting that more sophisticated approaches to risk assessment may be required to assess hazard from peri-urban agriculture in developing countries.