Internal release of nutrients is an important contributor to the nutrient dynamics in shallow eutrophic lakes. Zoobenthic organisms may contribute to this release by excreting nutrients to the overlaying water. Based on experiments and using results from previous experimental studies as well as field monitoring density data from 2007 to 2017, we calculated the annual and seasonal nutrient excretions of the two most common macroinvertebrates (Corbicula fluminea and Limnodrilus hoffmeisteri) in Lake Taihu, China. We compared these rates with the concentrations of NH₄–N, total nitrogen (TN), PO₄–P and total phosphorus (TP) in the lake water as well as with previous results of release rates from undisturbed sediments collected in the lake. The spatial distribution of nutrient excretion by the two invertebrate species varied markedly among sites and years. Regression analyses revealed significant relationships between total nutrient excretions by these two species and the concentrations of NH₄–N, TN, PO₄–P and TP in the lake, but with seasonal differences. The relationship was overall strongest in winter, followed by spring, and weakest in summer and autumn. The flux of NH₄–N and PO₄–P released by the two macroinvertebrate species were equivalent to as much as 50% and 66%, respectively, of the sediment release recorded in lab experiments under undisturbed conditions; however, the percentages would be somewhat lower under field conditions where the sediment is subjected to frequent wind-induced resuspension and fish disturbance, enhancing the release rates. The release declined during the study period due to a reduction in the density of macroinvertebrates, perhaps indicating increasing stocking of fish since 2007. Our results indicate that benthic invertebrates are important contributor to the internal loading in shallow eutrophic lakes.

The biodegradation of polychlorinated biphenyls (PCBs) occurs slowly when the degrading bacteria enter a low activity state, such as a viable but nonculturable (VBNC) state, under unfavorable environmental conditions. The introduction of resuscitation-promoting factor (Rpf) can re-activate VBNC bacteria. This study tested the feasibility of enhancing PCB biodegradation via supplementing Rpf in liquid culture and soil microcosms inoculated with Rhodococcus biphenylivorans strain TG9ᵀ. Exogenous Rpf resuscitated TG9ᵀ cells that had previously entered the VBNC state after 90 d of nutrient starvation, resulting in the significantly enhanced degradation of PCB by 24.3% over 60 h in liquid medium that originally contained 50 mg L⁻¹ Aroclor 1242. In soil microcosms containing 50 mg kg⁻¹ Aroclor 1242 and inoculated with VBNC TG9ᵀ cells, after 49 d of supplementation with Rpf, degradation efficiency of PCB reached 34.2%, which was significantly higher than the control. Our results confirmed that exogenous Rpf resuscitated VBNC TG9ᵀ cells by stimulating endogenous expression of rpf gene orthologs. The enhanced PCB-degrading capability was likely due to the increased cell numbers and the strong expression of PCB catabolic genes. This study demonstrated the role of Rpf in enhancing PCB degradation via resuscitating PCB-degrading bacteria, indicating a promising approach for the remediation of PCB contamination.

Fungi-associated phytoremediation is an environmentally friendly and cost-efficient approach to remove potential toxic elements (PTEs) from contaminated soils. Many fungal strains have been reported to possess PTE-biosorption behaviour which benefits phytoremediation performance. Nevertheless, most studies are limited in rich or defined medium, far away from the real-world scenarios where nutrients are deficient. Understanding fungal PTE-biosorption performance and influential factors in soil environment can expand their application potential and is urgently needed. This study applied attenuated total reflection Fourier-transform infrared (ATR-FTIR) coupled with phenotypic microarrays to study the biospectral alterations of a fungal strain Simplicillium chinense QD10 and explore the mechanisms of Cd and Pb biosorption. Both Cd and Pb were efficiently adsorbed by S. chinense QD10 cultivated with 48 different carbon sources and the biosorption efficiency achieved >90%. As the first study using spectroscopic tools to analyse PTE-biosorption by fungal cells in a high-throughput manner, our results indicated that spectral biomarkers associated with phosphor-lipids and proteins (1745 cm⁻¹, 1456 cm⁻¹ and 1396 cm⁻¹) were significantly correlated with Cd biosorption, suggesting the cell wall components of S. chinense QD10 as the primary interactive targets. In contrast, there was no any spectral biomarker associated with Pb biosorption. Addtionally, adsorption isotherms evidenced a Langmuir model for Cd biosorption but a Freundlich model for Pb biosorption. Accordingly, Pb and Cd biosorption by S. chinense QD10 followed discriminating mechanisms, specific adsorption on cell membrane for Cd and unspecific extracellular precipitation for Pb. This work lends new insights into the mechanisms of PTE-biosorption via IR spectrochemical tools, which provide more comprehensive clues for biosorption behaviour with a nondestructive and high-throughput manner solving the traditional technical barrier regarding the real-world scenarios.

The pollution of farm soils by the plasticizer dibutyl phthalate (DBP) should be researched owing to the extensive use of plastic film. We investigated the influence of DBP on microbial communities and enzyme activities in rhizosphere and non-rhizosphere soil during the different growth stages of wheat and determined the response through simulations. The results indicated that protease, polyphenol oxidase, and β-glucosidase activity in soil decreased with increasing DBP dosage, while dehydrogenase, urease, and acid phosphatase activities increased. Moreover, the effects of DBP on soil enzyme activity gradually weakened with DBP degradation. Dibutyl phthalate has a certain inhibitory effect on the activity, diversity, and heterogeneity of microorganisms in soil. In addition, DBP can increase the utilization of amines and carboxylic acids and decrease the utilization of carbohydrates and amino acids by soil microorganisms. According to the Gaussian and molecular docking analysis, we considered that monobutyl phthalate and DBP could affect the utilization of amino acids by Proteobacteria. The enzyme activity, microbial activity, and heterogeneity of rhizosphere soil were higher than those of non-rhizosphere soil. Microbial carbon source utilization in rhizosphere and non-rhizosphere soils depends on wheat growth, soil type, and DBP dosage. Owing to the widespread presence of DBP in agriculture, negative effects of phthalic acid esters should be considered in relation to soil quality and food safety in future.

Soil acidification has been expanding in many areas of Asia due to increasing reactive nitrogen (N) inputs and industrial activities. While the detrimental effects of acidification on forests have been extensively studied, less attention has been paid to grasslands, particularly alpine grasslands. In a soil pH manipulation experiment in the Qinghai-Tibet Plateau, we examined the effects of soil acidification on plant roots, which account for the major part of alpine plants.After three years of manipulation, soil pH decreased from 6.0 to 4.7 with the acid-addition gradient, accompanied by significant changes in the availability of soil nitrogen, phosphorus and cations. Plant composition shifted with the soil acidity, with graminoids replacing forbs. Differing from findings in forests, soil acidification in the alpine grassland increased root biomass by increasing the fraction of coarse roots and the production of fine roots, corresponding to enhanced sedge and grass biomass, respectively. In addition, litter decomposability decreased with altered root morphological and chemical traits, and soil acidification slowed root decomposition by reducing soil microbial activity and litter quality.Our results showed that acidification effect on root dynamics in our alpine grassland was significantly different from that in forests, and supported similar results obtained in limited studies in other grassland ecosystems. These results suggest an important role of root morphology in mediating root dynamics, and imply that soil acidification may lead to transient increase in soil carbon stock as root standing biomass and undecomposed root litter. These changes may reduce nutrient cycling and further constrain ecosystem productivity in nutrient-limiting alpine systems.

A microbially facilitated approach was developed to degrade 2, 2′, 4, 4′-tetrabrominated diphenyl ether (BDE-47). This approach consisted of biological production of Fe(II) and H₂O₂ by the dissimilatory metal-reducing bacterium Shewanella oneidensis MR-1 during the repetitive anoxic/oxic cycles and abiotic production of hydroxyl radical (HO●) with the biologically produced Fe(II) and H₂O₂ via Fenton reaction. Under the condition tested, BDE-47 did not inhibit the growth of S. oneidensis MR-1. Water soluble Fe(III)-citrate and the solid minerals ferrihydrite [Fe(III)₂O₃•0.5H₂O] and goethite [Fe(III)OOH] were tested in this study. Under anoxic condition, the amounts of Fe(II) produced by S. oneidensis MR-1 varied among the Fe(III)s tested, which decreased in the order of Fe(III)-citrate > ferrihydrite > goethite. Under subsequent oxic condition, H₂O₂ was produced via O₂ reduction by S. oneidensis MR-1. The amounts of H₂O₂ detected also varied, which decreased in the order of the reactions with Fe(III)-citrate > goethite > ferrihydrite. S. oneidensis MR-1 maintained its ability to produce Fe(II) and H₂O₂ for up to seven anoxic/oxic cycles. At each end of anoxic/oxic cycle, HO● was detected. The amount of HO● produced decreased in the order of the reactions with ferrihydrite > goethite > Fe(III)-citrate, which was opposite to that of H₂O₂ detected. Compared to the controls without HO●, the amounts of BDE-47 in the reactions with HO● decreased. The more HO● in the reaction, the less amount of BDE-47 detected. Furthermore, no BDE-47 degradation was observed when HO● was scavenged or ferrihydrite was either omitted or replaced by nitrate. Finally, identification of degradation products, such as hydroxylated BDE-47 and trisBDE, dibromophenol and monobromophenol, suggested that OH-addition and Br-substitution by HO● were the main mechanisms for degrading BDE-47. Collectively, all these results demonstrated for the first time that the Fenton reaction driven by S. oneidensis MR-1 degraded BDE-47 effectively.

Urban vegetation is associated with numerous public health benefits; however, urban tree canopies may be threatened by fugitive methane exposure from leaky natural gas distribution systems. Despite anecdotal evidence of the harmful impacts of natural gas leaks on urban tree decline, the relationship between soil gas exposure and tree health has not been formally quantified in an urban setting. We conducted a case-control study to compare soil natural gas exposure in sidewalk tree pits of healthy and dead or dying trees in Chelsea, Massachusetts, during summer 2019. We measured soil concentrations of methane and oxygen at four points around the trunks of 84 case and 97 control trees. We determined that case trees had 30 times the odds of being exposed to detectable levels of soil methane relative to the control trees sampled (95% CI = 3.93, 229). Among tree pits with elevated soil gas, we also found that methane concentrations were highest on the side of the tree pit closest to the street. These results contribute evidence to support the widespread belief that soil methane exposure can negatively impact urban tree health. They also suggest that fugitive methane leakage from urban natural gas distribution systems beneath the street surface may be responsible for elevated soil gas concentrations in sidewalk tree pits and subsequent tree death.

Whereas the adverse effects of vanadium released from smelting activities on soil microbial ecology have been widely recognized, little is known about spatiotemporal vanadium distribution and microbial community dynamics in typical contaminated sites. This study describes vanadium contents associated with health risk and microbial responses in both topsoil and subsoil during four consecutive seasons around an ongoing-production smelter in Panzhihua, China. Higher levels of vanadium concentration exceeding soil background value in China (82 mg/kg) were found close to the smelter. Vanadium concentrations decreased generally with the increase in distance to the smelter and depth below surface, as soil vanadium pollution is induced mainly by atmospheric deposition of vanadium bearing dust during smelting. Residual fraction was the predominated vanadium form in soils, with pronounced increase in bioavailable vanadium during rainfall period due to frequent drought-rewetting process. Topsoil close to the smelter exhibited significant contamination, inducing high probability of adverse health effects. Spatiotemporal vanadium distribution creates filtering effects on soil microorganisms, promoting metal tolerant genera in topsoil (e.g. Microvirga) and subsoil (e.g. Bacillus, Geobacter), which is the key in maintaining the community structure by promoting cooperative relation with other taxa. Our results reveal spatiotemporal vanadium distribution in soils at site scale with potential health risk and microbial responses, which is helpful in identifying severe contamination and implementing bioremediation.