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Epigenetic silencing of TET1 mediated hydroxymethylation of base excision repair pathway during lung carcinogenesis Full text
2021
Chen, Hong-qiang | Chen, Dong-jiao | Li, Yan | Yuan, Wen-bo | Fan, Jun | Zhang, Zhe | Han, Fei | Jiang, Xiao | Chen, J. P. (Jian-ping) | Wang, Dan-dan | Cao, Jia | Liu, Jin-yi | Liu, Wen-bin
The methylcytosine dioxygenase Ten-eleven translocation 1 (TET1) is an important regulator for the balance of DNA methylation and hydroxymethylation through various pathways. Increasing evidence has suggested that TET1 probably involved in DNA methylation and demethylation dysregulation during chemical carcinogenesis. However, the role and mechanism of TET1 during lung cancer remains unclear. In this study, we found that TET1 expression was significantly down-regulated and the methylation level was significantly up-regulated in 3-methylcholanthrene (3-MCA) induced cell malignant transformation model, rat chemical carcinogenesis model, and human lung cancer tissues. Demethylation experiment further confirmed that DNA methylation negatively regulated TET1 gene expression. TET1 overexpression inhibited cell proliferation, migration and invasion in vitro and in vivo, while knockdown of TET1 resulted in an opposite phenotype. DNA hydroxymethylation level in the promoter region of base excision repair (BER) pathway key genes XRCC1, OGG1, APEX1 significantly decreased and the degree of methylation gradually increased in malignant transformed cells. After differential expression of TET1, the level of hydroxymethylation, methylation and expression of these genes also changed significantly. Furthermore, TET1 binds to XRCC1, OGG1, and APEX1 to maintain them hydroxymethylated. Blockade of BER pathway key gene alone or in combination significantly diminished the effect of TET1. Our study demonstrated for the first time that TET1 expression is regulated by DNA methylation and TET1-mediated hydroxymethylation regulates BER pathway to inhibit the proliferation, migration and invasion during 3-MCA-induced lung carcinogenesis. These results suggested that TET1 gene can be a potential biomarker and therapy target for lung cancer.
Show more [+] Less [-]Biochar composite with microbes enhanced arsenic biosorption and phytoextraction by Typha latifolia in hybrid vertical subsurface flow constructed wetland Full text
2021
Irshad, Sana | Xie, Zuoming | Kāmrān, Muḥammad | Nawaz, Asad | Faheem, | Mehmood, Sajid | Gulzar, Huma | Saleem, Muhammad Hamzah | Rizwan, Muhammad | Malik, Zaffar | Parveen, Aasma | Ali, Shafaqat
Arsenic contamination of ground water is a worldwide issue, causing a number of ailments in humans. As an engineered and integrated solution, a hybrid vertical subsurface flow constructed wetland (VSSF-CW) amended with BCXZM composite (Bacillus XZM immobilized on rice husk biochar), was found effective for the bioremediation of arsenic contaminated water. Biological filter was prepared by amending top 3 cm of VSSF-CW bed with BCXZM. This filter scavenged ∼64% of total arsenic and removal efficiency of ∼95% was achieved by amended and planted (As + P + B) VSSF-CW, while non-amended (As + P) VSSF-CW showed a removal efficiency of ∼55%. The unplanted and amended (As + B) VSSF-CW showed a removal efficiency of ∼70%. The symbiotic association of Bacillus XZM, confirmed by SEM micrographs, significantly (p ≤ 0.05) reduced reactive oxygen species (ROS) and malondialdehyde (MDA) accumulation in Typha latifolia, hence, increasing the plant growth (2 folds). An increase in the indole acetic acid (IAA) and arsenic accumulation in plant was also observed in As + P + B system. The removal efficiency of the system was compromised after 4th consecutive cycle and 48 h was observed as optimum retention time. The FTIR-spectra showed the involvement of -N-H bond, carboxylic acids, –CH₂ stretching of –CH₂ and –CH₃, carbonyl groups, -C-H, C–O–P and C–O–C, sulphur/thiol and phosphate functional groups in the bio-sorption of arsenic by BCXZM filter. Our study is a first reported on the simultaneous phytoextraction and biosorption of arsenic in a hybrid VSSF-CW. It is proposed that BCXZM can be applied effectively in CWs for the bioremediation of arsenic contaminated water on large scale.
Show more [+] Less [-]Disruptive effects of chlorpyrifos on predator-prey interactions of Ceratophrys ornata tadpoles: Consequences at the population level using computational modeling Full text
2021
Salgado Costa, Carolina | Rimoldi, Federico | Pantucci Saralegui, Morena J. | Rubio Puzzo, M Leticia | Trudeau, Vance L. | Natale, Guillermo S.
Disruptive effects of chlorpyrifos on predator-prey interactions of Ceratophrys ornata tadpoles: Consequences at the population level using computational modeling Full text
2021
Salgado Costa, Carolina | Rimoldi, Federico | Pantucci Saralegui, Morena J. | Rubio Puzzo, M Leticia | Trudeau, Vance L. | Natale, Guillermo S.
Large-scale ecotoxicological studies have technical and ethical limitations, both related to the need to expose large numbers of individuals to potentially harmful compounds. The computational modeling is a complementary useful and predictive tool that overcomes these limitations. Considering the increasing interest in the effects of pesticides on behavioral traits, the aim of this study was to evaluate the effects of chlorpyrifos (CPF) on intra- and inter-specific interactions of anuran tadpoles, complementing traditional ecotoxicological tools with a theoretical analysis verified by computational simulations. Experiments were developed under two consecutive phases: a first phase of exposure (treated and control group), and a second phase of interactions. The second phase consisted of evaluating the effects of CPF on intra- and inter-specific interactions of exposed C. ornata (Co) tadpoles acting as predators and unexposed Rhinella fernandezae (Rf) tadpoles acting as prey (Experiment I), under different predator-prey proportions (0/10 = 0Co–10Rf, 2/8, 4/6, 6/4, 8/2, 10/0). Also, intraspecific interactions of three Co tadpoles under different conditions of exposure were evaluated (Experiment II: 3 exposed Co, 2 exposed Co/1 non-exposed, 1 exposed Co/2 non-exposed). During the exposure phase, chlorpyrifos induced significant mortality from 48 h (48 h: p < 0.05, 72 h–96 h: p < 0.001), irregular swimming, tail flexure, and the presence of subcutaneous air. Also, it induced effects on the sounds emitted after 96 h of exposure, registering a smaller number of pulses and higher dominant frequencies, and altered intra- and inter-specific interactions. During the interaction phase, the larvae continued to show sound effects, however, the antipredator mechanism continued to be operating and efficient. Finally, it was possible to model the behavior of the larvae under the effects of chlorpyrifos. We conclude that experimental data and computational modeling matched. Therefore, computational simulation is a valuable ecotoxicological tool that provides new information and allows prediction of natural processes.
Show more [+] Less [-]Disruptive effects of chlorpyrifos on predator-prey interactions of Ceratophrys ornata tadpoles: Consequences at the population level using computational modeling Full text
2021
Salgado Costa, Carolina | Rimoldi, Federico | Pantucci, Morena Johana | Rubio Puzzo, Maria Leticia | Trudeau, Vance L. | Natale, Guillermo Sebastian
Large-scale ecotoxicological studies have technical and ethical limitations, both related to the need to expose large numbers of individuals to potentially harmful compounds. The computational modeling is a complementary useful and predictive tool that overcomes these limitations. Considering the increasing interest in the effects of pesticides on behavioral traits, the aim of this study was to evaluate the effects of chlorpyrifos (CPF) on intra- and inter-specific interactions of anuran tadpoles, complementing traditional ecotoxicological tools with a theoretical analysis verified by computational simulations. Experiments were developed under two consecutive phases: a first phase of exposure (treated and control group), and a second phase of interactions. The second phase consisted of evaluating the effects of CPF on intra- and inter-specific interactions of exposed C. ornata (Co) tadpoles acting as predators and unexposed Rhinella fernandezae (Rf) tadpoles acting as prey (Experiment I), under different predator-prey proportions (0/10 = 0Co–10Rf, 2/8, 4/6, 6/4, 8/2, 10/0). Also, intraspecific interactions of three Co tadpoles under different conditions of exposure were evaluated (Experiment II: 3 exposed Co, 2 exposed Co/1 non-exposed, 1 exposed Co/2 non-exposed). During the exposure phase, chlorpyrifos induced significant mortality from 48 h (48 h: p < 0.05, 72 h–96 h: p < 0.001), irregular swimming, tail flexure, and the presence of subcutaneous air. Also, it induced effects on the sounds emitted after 96 h of exposure, registering a smaller number of pulses and higher dominant frequencies, and altered intra- and inter-specific interactions. During the interaction phase, the larvae continued to show sound effects, however, the antipredator mechanism continued to be operating and efficient. Finally, it was possible to model the behavior of the larvae under the effects of chlorpyrifos. We conclude that experimental data and computational modeling matched. Therefore, computational simulation is a valuable ecotoxicological tool that provides new information and allows prediction of natural processes. | Fil: Salgado Costa, Carolina. Universidad Nacional de La Plata. Facultad de Ciencias Exactas. Centro de Investigaciones del Medio Ambiente - Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Centro de Investigaciones del Medio Ambiente; Argentina | Fil: Rimoldi, Federico. Universidad Nacional de La Plata. Facultad de Ciencias Exactas. Centro de Investigaciones del Medio Ambiente - Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Centro de Investigaciones del Medio Ambiente; Argentina | Fil: Pantucci, Morena Johana. Universidad Nacional de La Plata. Facultad de Ciencias Exactas. Centro de Investigaciones del Medio Ambiente - Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Centro de Investigaciones del Medio Ambiente; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Limnología "Dr. Raúl A. Ringuelet". Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Instituto de Limnología; Argentina | Fil: Rubio Puzzo, Maria Leticia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Física de Líquidos y Sistemas Biológicos. Universidad Nacional de La Plata. Facultad de Ciencias Exactas. Instituto de Física de Líquidos y Sistemas Biológicos; Argentina | Fil: Trudeau, Vance L.. University of Ottawa; Canadá | Fil: Natale, Guillermo Sebastian. Universidad Nacional de La Plata. Facultad de Ciencias Exactas. Centro de Investigaciones del Medio Ambiente - Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Centro de Investigaciones del Medio Ambiente; Argentina
Show more [+] Less [-]Mercury bioaccumulation pathways in tusk (Brosme brosme) from Sognefjord, Norway: Insights from C and N isotopes Full text
2021
Azad, A.M. | Frantzen, S. | Bank, M.S. | Madsen, L. | Maage, A.
Seafood is the main source of methylmercury (MeHg) exposure for humans and elevated total mercury (Hg) concentrations have been reported in marine fish from Norwegian fjords compared with offshore areas. Hg in tusk fillets (n = 201) and liver samples (n = 177) were measured in individuals from different habitats including offshore, coastal area, outer and inner Sognefjord. Specifically, the effects of habitat, energy sources and trophic complexity on Hg bioaccumulation pathways in tusk (Brosme brosme) were investigated using stable isotopes of carbon (δ¹³C) and nitrogen (δ¹⁵N). The concentrations of Hg in tusk increased from offshore towards inner Sognefjord. While Hg concentrations in sediment were at background levels, tusk fillet samples from 7 of 8 sites in Sognefjord had higher Hg levels than the maximum level set by European Union. Based on these findings, human consumption advice for tusk from Sognefjord was issued by the Norwegian Food Safety Authority. δ¹³C values in tusk successfully discriminated individuals from different habitats and were positively correlated to Hg concentrations in tusk across individuals, sites and habitats, outlining the potential importance of terrestrial carbon and most likely the atmospheric deposition of Hg from the catchment to the overall Hg bioaccumulation and exposure regime in tusk. Additionally, we postulate that the effects of terrestrial carbon sources increased towards inner Sognefjord and likely influenced Hg bioavailability throughout the food web. In contrast, δ¹⁵N values were patchy throughout the fjord system and although trophic position explained some of the Hg variation between individual fish, it was not correlated with Hg variation across sites and habitats. Our results suggest that tusk can accumulate high levels of Hg in fjord ecosystems and that catchment runoff is likely an important driver of Hg bioaccumulation in this species.
Show more [+] Less [-]Response surface modeling with Box-Behnken design for strontium removal from soil by calcium-based solution Full text
2021
Song, Hojae | Chung, Hyeonyong | Nam, Kyoungphile
Owing to its physicochemical similarity to strontium (Sr), calcium (Ca) was tested as a key component of a soil washing solution for Sr-contaminated soil collected near a nuclear power plant. A four-factor, three-level Box–Behnken experimental design combined with response surface modeling was employed to determine the optimal Sr washing condition for Ca-based solution. The Ca concentration (0.1–1 M), liquid-to-soil ratio (5–20), washing time (0.5–2 h), and pH (2.0–7.0) were tested as the independent variables. From the Box–Behnken design, 27 sets of experimental conditions were selected, and a second-order polynomial regression equation was derived. The significance of the independent parameters and interactions was tested by analysis of variance. Ca concentration was found to be the most influential factor. To determine whether the four variables were independent, three-dimensional (3D) response surface plots were established. The optimal washing condition was determined to be as follows: 1 M Ca, L/S ratio of 20, 1 h washing, and pH = 2. Under this condition, the highest Sr removal efficiency (68.2%) was achieved on a soil contaminated with 90.1 mg/kg of Sr. Results from five-step sequential extraction before and after washing showed that 84.0% and 82.9% of exchangeable and carbonate-bound Sr were released, respectively. In addition, more tightly bound Sr, such as Fe/Mn oxides-bound and organic matter-bound Sr, were also removed (86.2% and 64.5% removal, respectively).
Show more [+] Less [-]Source profiles, emission factors and associated contributions to secondary pollution of volatile organic compounds (VOCs) emitted from a local petroleum refinery in Shandong Full text
2021
Lv, Daqi | Lü, Sihua | Tan, Xin | Shao, Min | Xie, Shaodong | Wang, Lingfeng
An in-depth study was conducted to quantify and characterize VOC emissions from a petroleum refinery located in Shandong, China. The VOC emission inventory established in this study showed that storage tanks were the largest emission source, accounting for 56.4% of total emissions, followed by loading operations, wastewater collection and treatment system, process vents, and equipment leaks. Meanwhile, the localization factors for refining, storage tanks and loading operations were calculated, which were 1.33, 0.75 and 0.31g VOCs/kg crude oil refined. Furthermore, the characteristics of fugitive and organized emissions were determined for various processes and emission sources using a gas chromatography–mass spectrometry/flame ionization detection (GC-MS/FID) system. Most samples contained mainly alkanes, but the total VOC concentrations and key species varied greatly among processes. The source profile of the refinery, synthesized using the weighted average method, indicated that cis-2-butene (14.5%), n-pentane (10.2%), n-butane (7.4%), isopentane (6.5%) and MTBE (5.9%) were the major species released by this refinery. Assessment of O₃ and secondary organic aerosol formation potentials were completed, and the results indicated that cis-2-butene, m/p-xylene, toluene, n-pentane, isopentane, benzene, o-xylene and ethylbenzene were the active species for which treatment should be prioritized.
Show more [+] Less [-]Fe(II) enhances simultaneous phosphorus removal and denitrification in heterotrophic denitrification by chemical precipitation and stimulating denitrifiers activity Full text
2021
Ma, Hang | Gao, Xinlei | Chen, Yihua | Zhu, Jiaxin | Liu, Tongzhou
Using Fe(II) salt as the precipitant in heterotrophic denitrification achieves improved TP removal, and enhancement in denitrification was often observed. This study aimed to obtain a better understanding of Fe(II)-enhanced denitrification with sufficient carbon source supply. Laboratory-scale experiments were conducted in SBRs with or without Fe(II) addition. Remarkably improved TP removal was experienced. TP removal efficiency in Fe(II) adding reactor was 85.8 ± 3.4%; whereas, that in the reactor without Fe(II) addition was 31.1 ± 2.8%. Besides improved TP removal, better TN removal efficiency (94.1 ± 1.1%) were recorded when Fe(II) was added, and that in the reactor without Fe(II) addition was 89 ± 0.8%. The specific denitrification rate were observed increase by 12.6% when Fe(II) was added. Further microbial analyses revealed increases in the abundances of typical denitrifiers (i.e. Niastella, Opitutus, Dechloromonas, Ignavibacterium, Anaeromyxobacter, Pedosphaera, and Myxococcus). Their associated denitrifying genes, narG, nirS, norB, and nosZ, were observed had 14.2%, 19.4%, 21.6%, and 9.9% elevation, respectively. Such enhancement in denitrification shall not be due to nitrate-dependent ferrous oxidation, which prevails in organic-deficient environments. In an environment with a continuous supply of Fe(II) and plenty of carbon sources, a cycle of denitrifying enzyme activity enhancement in the presence of Fe(II) facilitating nitrogen substrate utilization, stimulating denitrifier metabolism and growth, elevating denitrifying genes abundance, and increasing denitrifying enzymes expression were thought to be responsible for the Fe(II)-enhanced heterotrophic denitrification. Fe(II) salt is often a less expensive precipitant and has recently become attractive for TP removal in wastewater. The findings of this study solidify previous observation of enhancement of both TP and TN removal by adding Fe(II) in denitrification, and would be helpful for developing cost-effective pollutant removal processes.
Show more [+] Less [-]A novel approach based on multiple fish species and water column compartments in assessing vertical microlitter distribution and composition Full text
2021
Palazzo, Luca | Coppa, Stefania | Camedda, Andrea | Cocca, Mariacristina | De Falco, Francesca | Vianello, Alvise | Massaro, Giorgio | de Lucia, Giuseppe Andrea
The assessment of the distribution and composition of microlitter in the sea is a great challenge. Biological indicators can be an irreplaceable tool since they measure microlitter levels in their environments in a way that is virtually impossible to replicate by direct physical measurements. Furthermore, trends can provide policymakers with statistically robust analysis. We looked into the capacity of multiple fish species to describe the distribution and composition of microlitter vertically across different compartments of the water column. A total of 502 individuals from six selected species (Scomber scombrus, Oblada melanura, Spicara smaris, Boops boops, Merluccius merluccius and Mullus barbatus) were collected on the western side of Sardinia island and allocated to three compartments: surface, mid-water and bottom. The species of the surface exhibited a higher frequency of occurrence (41.89%) of microlitter ingestion, compared to those of the mid-water and bottom (19.60%; 22.58%). A significant difference in the average number of ingested microlitter was found between the surface and the bottom compartment. All the microlitter fragments found were analysed through Fourier Transform Infrared Spectroscopy (FTIR). The comparison of the expected buoyancies of the polymers identified puth faith in the allocation of the species to the respective compartments. Therefore, considering the Marine Strategy Framework Directive objective, this approach could be useful in assessing microlitter distribution and composition vertically across the water column.
Show more [+] Less [-]Phosphate hinders the complexation of dissolved organic matter with copper in lake waters Full text
2021
Ding, Xiang | Xu, Weihua | Li, Zhongwu | Huang, Mei | Wen, Jiajun | Jin, Changsheng | Zhou, Mi
The properties of phosphate in lakes and their ability to cause eutrophication have been well studied; however, the effects of phosphate on the environmental behavior of other substances in lakes have been ignored. Dissolved organic matter (DOM) and heavy metals may coexist with phosphate in lakes. Herein, the mechanisms underlying the influence of phosphate on heavy metals complexation with DOM were investigated using multi-spectroscopic tools. Overall, the amount of DOM-bound Cu(Ⅱ) decreased with the increasing phosphate content. Furthermore, the fluorescence excitation and emission matrix results combined with parallel factor analysis showed that when the Cu(Ⅱ) concentration increased from 0 to 5 mg/L and 50 μM phosphate to the reaction of DOM and copper, the fluorescence intensity of tyrosine (component 1), humic-like (component 2) and tryptophan (component 3) decreased by 36.46%, 57.34%, and 74.70% compared with the treatment with no phosphate addition, respectively. This finding indicates that the binding of different fluorescent components to Cu(Ⅱ) was restricted by phosphate. Furthermore, different functional groups responded differently to Cu(Ⅱ) under different phosphate concentrations. The binding sequence of different functional groups under high concentration of phosphate (phenolic hydroxyl group>amide (Ⅰ) >carbohydrates) was completely opposite to that with no phosphate. These results demonstrated that phosphate could restrict the binding affinity of heavy metals with different fluorescent substances or organic ligands of DOM, suggesting that the comigration of DOM-bound heavy metals in lakes is hindered by phosphate and the risk of heavy metal poisoning in aquatic organisms is therefore diminished.
Show more [+] Less [-]BPA modulates the WDR5/TET2 complex to regulate ERβ expression in eutopic endometrium and drives the development of endometriosis Full text
2021
Xue, Wen | Yao, Xiong | Ting, Geng | Ling, Jin | Huimin, Liu | Yuan, Qiao | Chun, Zhou | Ming, Zhang | Yuanzhen, Zhang
Overexpression of estrogen receptor β (ERβ) in endometrium contributes to endometriosis (EM) pathogenesis. Trimethylation of the H3 lysine (K) 4 (H3K4me3) in promoters is strongly correlated with gene expression. This study aimed to explore the effects of bisphenol A (BPA) exposure on EM development from the perspective of the regulation of ERβ expression in eutopic endometrium via the H3K4me3-related epigenetic pathway. A mouse EM model was established to investigate the effects of BPA. Immortalized human normal endometrial stromal cells (iESCs) were cultured and treated with BPA to explore the underlying mechanism. Eutopic endometria from patients with or without EM were collected and analyzed. Results showed that BPA elevated ERβ expression in mouse eutopic endometrium and promoted lesion growth. BPA also promoted WD repeat domain 5 (WDR5) expression and upregulated H3K4me3 levels in the ERβ promoter and Exon 1. Further research indicated that WDR5 interacted with tet methylcytosine dioxygenase 2 (TET2), while BPA exposure enhanced the interaction between these two proteins, promoted the recruitment of the WDR5/TET2 complex to the ERβ promoter and Exon 1, and inhibited DNA methylation of CpG islands. The WDR5/TET2 interaction was essential for BPA-induced ERβ overexpression. Enhanced WDR5/TET2 interaction was also observed in eutopic endometria from EM patients. Further results showed that BPA upregulated WDR5 expression through the G protein-coupled estrogen receptor (GPER)-mediated PI3K/mTOR signaling pathway. In conclusion, our study suggests that BPA exposure promotes EM development by upregulating ERβ expression in eutopic endometrium via the WDR5/TET2-mediated epigenetic pathway.
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