Methodologies developed by European Member States to assess the environmental quality of their coastal waters under the EU Water Framework Directive (WFD, 2000/60/EC) may have an associated source of uncertainty. Here we identify and quantify the level of uncertainty in the CARLIT (Cartography of littoral and upper-sublittoral communities) methodology to test its effectiveness and reliability. The outcomes show that the effect of temporal variability (among years) within each water body is low when CARLIT is performed every year along the entire rocky coast. The spatial variability within a water body is also low. According to these results, CARLIT could be performed every 3years across all the water body or, alternatively, every year considering at least 60% of each water body, without a significant reduction of the confidence in the classification of the Ecological Quality Status (EQS).

Coral populations in the Persian Gulf have a reputation for being some of the toughest in the world yet little is known about the energetic constraints of living under temperature and salinity extremes. Energy allocation for sexual reproduction in Gulf corals was evaluated relative to conspecifics living under milder environmental conditions in the Oman Sea. Fecundity was depressed at Gulf sites in two Indo-Pacific merulinid species (Cyphastrea microphthalma and Platygyra daedalea) but not in a regionally endemic acroporid (Acropora downingi). Gulf populations of each species experienced high temperature bleaching at the onset of gametogenesis in the study but fecundity was only negatively impacted in P. daedalea and A. downingi. Large population sizes of C. microphthalma and P. daedalea in the Gulf are expected to buffer reductions on colony-level fecundity. However, depleted population sizes of A. downingi at some Gulf sites equate to low reef-wide fecundity and likely impede outcrossing success.

The presence of antibiotics in animal manure represents a significant concern with respect to the introduction of antibiotic residues to the environment and the development of antibiotic-resistant pathogens. In this review, we have (1) compiled reported detections of antibiotics in poultry litter, swine manure, and cattle manure; and (2) discussed the treatment of antibiotics during conventional agricultural waste management practices. The most reported antibiotics in animal manure were fluoroquinolones, sulfonamides, and tetracyclines, all of which the World Health Organization has listed as critically important for human health. Relatively high treatment efficiencies were observed for antibiotics in composting, anaerobic digestion, and aerobic/anaerobic lagooning. Interestingly, active management of compost piles did not demonstrate a significant increase in antibiotic degradation; however, low- and high-intensity compost systems exhibited high treatment efficiencies for most antibiotics. Anaerobic digestion was not effective for some key antibiotics, including lincosamides and select sulfonamides and fluoroquinolones. Given the potential for energy recovery during anaerobic digestion of agricultural waste, efforts to optimize antibiotic degradation represent an important area for future research. Lagoons also exhibited fairly high levels of antibiotic treatment, especially for aerobic systems; however, the operational costs/complexity of these systems inhibit utilization at the full-scale. No overall trends in antibiotic treatment efficiency during these three agricultural waste management practices were observed. Finally, we posit that increased efforts to include analysis of antibiotic residues in animal manure in national surveillance programs will provide important information to address concerns over the continued use of antimicrobials in animal feeding operations.

Organochlorines (OCs), such as pesticides and polychlorinated biphenyls (PCBs), are persistent, toxic and widely distributed through atmospheric transport and ocean currents. Few studies have been conducted on OCs in sea turtles, especially on the coast of Brazil. Chelonia mydas is the largest hard-shell sea turtle and is found tropical and subtropical regions in all oceans. The aim of the present study was to determine the occurrence of OCs in the green sea turtle (C. mydas). Fat, liver, kidney and muscle samples were collected from 27 juveniles found on the beach of the city of Ubatuba on the northern coast of the state of São Paulo, Brazil. OCs were extracted with organic solvents and the extract was purified with concentrated acid. Gas chromatography-mass spectrometry and electron capture detection were used for the identification and quantification of PCBs and pesticides, respectively. No organochlorine pesticides were detected in any of the samples. Concentrations of total PCBs in wet weight were <1.6 to 48.9ng/g in fat tissue, <1.6 to 17.4ng/g in liver tissue and <1.6 to 37.7ng/g in kidney tissue. The low levels found are mainly related to diet, as the green sea turtle is basically herbivorous and lower PCB contamination compared to other regions.

Adding fertiliser to sediments is an established way of studying the effects of eutrophication but a lack of consistent methodology, reporting on enrichment levels, or guidance on application rates precludes rigorous synthesis and meta-analysis. We developed a simple enrichment technique then applied it to 28 sites across an intertidal sandflat. Fertiliser application rates of 150 and 600gNm−2 resulted in pore water ammonium concentrations respectively 1–110 and 4–580×ambient, with greater elevations observed in deeper (5–7cm) than surface (0–2cm) sediments. These enrichment levels were similar to eutrophic estuaries and were maintained for at least seven weeks. The high between-site variability could be partially explained by the sedimentary environment and macrofaunal community (42%), but only at the high application rate. We suggest future enrichment studies should be conducted in situ across large environmental gradients to incorporate real world complexity and increase generality of conclusions.

This study investigated the effects of 48h heavy metal exposure upon the metabolic profiles of Ruditapes decussatus and Ruditapes philippinarum using 1H NMR metabolomics. Both species were exposed to increasing concentrations of lead nitrate (10, 40, 60 and 100μg/L) and zinc chloride (20, 50, 100 and 150μg/L), under laboratory conditions. ICP-OES analysis was further performed on the clams' samples in order to verify the occurrence of heavy metal bioaccumulation. With respect to the controls, the metabolic profiles of treated R. decussatus exhibited higher levels of organic osmolytes and lower contents of free amino acids. An opposite behavior was shown by R. philippinarum. In terms of heavy metal, the exposure effects were more evident in the case of Pb rather than Zn. These findings show that NMR-based metabolomics has the required sensitivity and specificity for the identification of metabolites that can act as sensitive indicators of contaminant-induced stress.

The Japanese Government is seeking an appropriate level of nutrient load from the land to maintain the highest possible estuarine fishery production and water transparency simultaneously. To provide a scientific basis for the governmental inquiry, we conducted sensitivity analyses using an ecosystem model of Hiroshima Bay in order to assess the ecosystem’s responses to phosphorus and nitrogen inputs. Load levels of phosphorus (Case P), nitrogen (Case N) and both phosphorus and nitrogen (Case NP) that were different from the average loading recorded during 1991–2000 (±25%, ±50%, and ±75%) were applied. The results showed that phosphorus had a significantly greater impact on the primary production of the bay than nitrogen. Case P+25 increased the primary production but led to N-limitation. However, it was found that Case NP at the levels over +25% could bring the Hiroshima Bay ecosystem back to its eutrophic state of 30years ago.

This paper reports the results of an assessment of contamination by polychlorinated biphenyls and polycyclic aromatic hydrocarbons in two demersal species of commercial importance. The organisms considered were Mullus barbatus and Engraulis encrasicolus from three marine areas off the Italian coasts: North and South Adriatic Sea and North Tyrrhenian Sea. The instrumental analyzes have revealed, in many samples examined, the presence of most of PCB congeners and 5 of the 16 PAHs considered. Organisms caught in the waters of Apulia have greater contamination values, while the samples from Tuscany showed the lowest ones, results probably referable to the environmental quality differences between the areas of origin, at least for PAHs, since the sampling areas are represented respectively by areas with presence of oil extraction plant (Adriatic), and by an area subject to environmental protection.

Climate change with human direct pressures represent significant threats to the resilience of shoreline habitats like mangroves. A rapid, whole-of-system assessment strategy is needed to evaluate such threats, better linking innovative remote sensing with essential on-ground evaluations. Using the Shoreline Video Assessment Method, we surveyed around 190km of the mostly mangrove-fringed (78%) coastline of Kien Giang Province, Vietnam. The aim was to identify anthropogenic drivers of degradation, establishing baseline for specific rehabilitation and protection strategies. Fish traps occupy at least 87% of shoreline mangroves, around which there were abundant human activities – like fishing, crabbing, farming, plus collecting firewood and foliage. Such livelihoods were associated with remnant, fringing mangrove that were largely degraded and threatened by erosion retreat, herbivory, and excessive cutting. Our assessment quantified associated threats to shoreline stability, along with previous rehabilitation intervention measures. The method offers key opportunities for effective conservation and management of vulnerable shoreline habitats.

One of the more important steps in understanding the ecosystem-level effects of anthropogenic disturbances on resident species is developing an accurate representation of the lethal and sub-lethal effects of these stressors. We develop methods for describing the impacts of oil on growth and mortality rates in fishes. We conducted a literature search to determine potential relationships between direct and indirect effects of exposure to oil, based on the frequency of lesions and body growth reduction. Data examining these effects with different exposure mediums were assessed and then input into four potential response models (a linear, step-wise, hockey-stick, and exponential model). We assessed the models using the Akaike Information Criterion. The most parsimonious and best fit model was the hockey-stick. This analysis will aid in identifying where future research on the impact of oil on fish should focus and also aid the development of ecosystem models on impacts of oil spills.