International audience | The Biological Resource Centre for the Environment BRC4Env is a network of Biological Resource Centres (BRCs) and collections whose leading objectives are to improve the visibility of genetic and biological resources maintained by its BRCs and collections and to facilitate their use by a large research community, from agriculture research to life sciences and environmental sciences. Its added value relies on sharing skills, harmonizing practices, triggering projects in comparative biology, and ultimately proposing a single-entry portal to facilitate access to documented samples, taking into account the partnership policies of research institutions as well as the legal frame which varies with the biological nature of resources. BRC4Env currently includes three BRCs: the Centre for Soil Genetic Resources of the platform GenoSol, in partnership with the European Conservatory of Soil Samples; the Egg Parasitoids Collection (EP-Coll); and the collection of ichthyological samples, Colisa. BRC4Env is also associated to several biological collections: microbial consortia (entomopathogenic bacteria, freshwater microalgae…), terrestrial arthropods, nematodes (plant parasitic, entomopathogenic, animal parasitic...), and small mammals. The BRCs and collections of BRC4Env are involved in partnership with academic scientists, as well as private companies, in the fields of medicinal mining, biocontrol, sustainable agriculture, and additional sectors. Moreover, the staff of the BRCs is involved in many training courses for students from French licence degree to Ph.D, engineers, as well as ongoing training.

Livret Guide | Depuis l'adoption de la Directive Cadre sur l'Eau (DCE) en 2000 les autorités portent une attention accrue envers les contaminations de l'eau par les pesticides. Les autorités en charge de la question ont alors conçu de nombreux instruments d'action publique visant à les réduire. Néanmoins, la situation est toujours très préoccupante aujourd'hui. Selon le service de la donnée et des études statistiques (SDES), les pesticides sont présents en France dans la plupart des cours d'eau et des eaux souterraines. Ainsi, bon nombre de masses d'eau n'ont pas atteint l'objectif de "bon état" en 2015, au regard des indicateurs fixés par la DCE. Pour appuyer l'action publique, de nombreux projets de recherche ont été engagés afin de concevoir de nouveaux outils et méthodes de gestion des pollutions mais aussi produire des références (études de cas, analyse partagée, norme technique, etc.). Il existe un grand nombre d'outils développés dans le cadre de travaux de recherche pouvant apporter un appui aux institutions impliquées dans la protection des ressources en eau vis-à-vis des pesticides. Ils ne sont pas souvent connus ou accessibles que dans un cercle restreint d'initiés. Afin d'offrir une vue d'ensemble, ainsi que d'informer et de guider les utilisateurs potentiels, un référentiel a été établi à partir de l'inventaire des outils, méthodes et dispositifs de production de références existants ou en cours de développement.

High abundances of juvenile fish in certain ports suggest they might provide alternative nursery habitats for several species. To further investigate this possibility, post-settlement growth, metal uptake and body condition were estimated in 127 juveniles of two seabream species, collected in 2014–15, inside and outside the highly polluted ports of the Bay of Toulon. This showed that differences in local pollution levels (here in Hg, Cu, Pb and Zn) are not consistently mirrored within fish flesh. Muscle metal concentrations, below sanitary thresholds for both species, were higher in ports for Cu, Pb and V only. Otherwise, fish muscle composition principally differed by species or by year. Juvenile growth and condition were equivalent at all sites. Higher prey abundance in certain ports might therefore compensate the deleterious effects of pollution, resulting in similar sizes and body conditions for departing juvenile fish than in nearby natural habitats.

Pelagic sharks (blue shark Prionace glauca and shortfin mako Isurus oxyrinchus) caught by long-line Spanish and Portuguese fleets in the NE Atlantic, were sampled at Vigo fish market (Spain) for total mercury (Hg) analysis. Hg concentration in white muscle increased with size and weight in both species, but at a higher rate in shortfin mako than in the blue shark. No difference was found with sex, year and season. Spatial variation was observed in the blue shark with higher Hg values in the North of the Azorean archipelago, but not in the shortfin mako. These high-level predators are particularly susceptible to bioaccumulate contaminants (Hg) in their tissues (muscle). However, a significant positive relationship between Hg concentration and trophic level (δ15N) of individuals was observed only in the shortfin mako. Most sharks landed were juveniles which presented Hg concentration lower than the maximum limit allowed by the European Union (1 mg kg− 1 wet weight) for marketing. However, concentrations above this threshold were most recorded in blue sharks larger than 250 cm total length (TL) and in shortfin makos larger than 190 cm TL, raising the question of the commercialization of large-sized individuals.

3D coupled modeling approach is used for the PCB dispersion assessment in the Gulf of Lion and its transfer to zooplankton via biogeochemical processes. PCB budgets and fluxes between the different species of PCB: dissolved, particulate, biosorbed on plankton, assimilated by zooplankton, which are governed by different processes: adsorption/desorption, bacteria and plankton mortality, zooplankton excretion, grazing, mineralization, volatilization have been estimated. Model outputs were compared with the available in situ data. It was found that the Rhone River outflows play an important role in the organism contamination in the coastal zone, whereas the atmospheric depositions are rather more important in the offshore zones. The transfer of the available contaminant to bacteria and phytoplankton species is mainly related to the biomass present in the water column. Absorption fluxes (grazing) to zooplankton are rather higher than the passive sorption fluxes, which are themselves also linked to the sorption coefficient.

Concentrations of 6 trace metals (Ag, Cd, Cu, Ni, Pb, Zn) in the muscle of 2 sharks (Galeus melastomus and Scyliorhinus canicula), 4 teleosts (Helicolenus dactylopterus, Lepidorhombus boscii, Micromesistius poutassou and Phycis blennoides) and 1 crustacean (Nephrops norvegicus) were compared between the Bay of Biscay (Atlantic Ocean) and the Gulf of Lions (Mediterranean Sea). Although average concentrations and the trace element pollution index were generally higher in the Gulf of Lions, significant differences between the two ecosystems were only found for Zn for Helicolenus dactylopterus, and for Ag and Cu for the crustacean N. norvegicus. Moreover, some relationships between trophic level or size and metal concentrations were found for these two species. The absence of clear pattern may result from the blurring effect of contamination and excretion that may act differentially for all species and all elements.

Livret Guide | Depuis l'adoption de la Directive Cadre sur l'Eau (DCE) en 2000 les autorités portent une attention accrue envers les contaminations de l'eau par les pesticides. Les autorités en charge de la question ont alors conçu de nombreux instruments d'action publique visant à les réduire. Néanmoins, la situation est toujours très préoccupante aujourd'hui. Selon le service de la donnée et des études statistiques (SDES), les pesticides sont présents en France dans la plupart des cours d'eau et des eaux souterraines. Ainsi, bon nombre de masses d'eau n'ont pas atteint l'objectif de "bon état" en 2015, au regard des indicateurs fixés par la DCE. Pour appuyer l'action publique, de nombreux projets de recherche ont été engagés afin de concevoir de nouveaux outils et méthodes de gestion des pollutions mais aussi produire des références (études de cas, analyse partagée, norme technique, etc.). Il existe un grand nombre d'outils développés dans le cadre de travaux de recherche pouvant apporter un appui aux institutions impliquées dans la protection des ressources en eau vis-à-vis des pesticides. Ils ne sont pas souvent connus ou accessibles que dans un cercle restreint d'initiés. Afin d'offrir une vue d'ensemble, ainsi que d'informer et de guider les utilisateurs potentiels, un référentiel a été établi à partir de l'inventaire des outils, méthodes et dispositifs de production de références existants ou en cours de développement.

Dwarf eelgrasses (Zostera noltei) populations have decreased since 2005 in Arcachon Bay (southwest France). Various stressors have been pointed out, however the role of xenobiotics like pesticides or copper (Cu) and of parameters like water temperature warming have not yet been explored. To determine their impact, Z. noltei individuals were collected in a pollution-free site and transferred to the laboratory in seawater microcosms. This dwarf eelgrass was exposed to a pesticide cocktail and copper, alone or simultaneously, at temperatures (10 °C, 20 °C, 28 °C) representative of different seasons. After a two-week contamination, leaf growth, leaf bioaccumulation of Cu, and differential expression of target genes were studied. Eelgrasses bioaccumulated Cu regardless of the temperature, with reduced efficiency in the presence of the Cu and pesticide cocktail at the two higher temperatures. High temperature also exacerbated the effect of contaminants, leading to growth inhibition and differential gene expression. Mitochondrial activity was strongly impacted and higher mortality rates occurred. Experimental results have been confirmed during field survey. This is the first report on the impacts on Z. noltei of pesticides and Cu associate to temperature.

Entanglement of marine fauna is one of the principal impacts of marine litter, with an incidence that can vary strongly according to regions, the type and the quantity of marine litter. On the seafloor, areas dominated by sessile suspension feeders, such as tropical coral reefs or deep-sea coral and sponge aggregations, have been termed “animal forests” and have a strong potential to monitor the temporal and spatial trends of entanglement by marine litter, especially fishing gears. Several characteristics of these organisms represent advantages while avoiding constraints and bias. Biological constraints and logistical aspects, including tools, are discussed to better define a strategy for supporting long-term evaluation of accumulation and entanglement of marine litter.

The work presented here aims at comparing monitoring of S-metolachlor, the major pesticide in use in the Arcachon Bay (South West of France, transitional coastal area), by chemical analysis (monthly passive sampling) and contaminant dissipation modeling from sources (Mars-2D model). The global strategy consisted in i) identifying the major sources of S-metolachlor to the Bay, ii) monitoring these sources for 12 months, and iii) comparing modeled data in the Bay based on measured inputs, to chemical measurements made inside the Bay along with the 12-month source monitoring. Results first showed that the major S-metolachlor surface inputs to the Arcachon Bay are mainly from one single source. Modeled and measured data were in good agreement at 5 sites in the Bay, both in terms of concentration range and seasonal trends. Modeling thus offers a cost-effective solution for monitoring contaminants in transitional waters, overcoming in addition the technical limitations for measuring pg L−1 or lower levels in coastal waters. However, we highlighted that secondary sources may affect accuracy at local level.