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Does liming grasslands increase biomass productivity without causing detrimental impacts on net greenhouse gas emissions? Full text
2022
Abdalla, Mohamed | Espenberg, Mikk | Zavattaro, Laura | Lellei-Kovacs, Eszter | Mander, Ulo | Smith, Kate | Thorman, Rachel | Damatirca, Claudia | Schils, Rene | ten-Berge, Hein | Newell-Price, Paul | Smith, Pete
Soil acidification has negative impacts on grass biomass production and the potential of grasslands to mitigate greenhouse gas (GHG) emissions. Through a global review of research on liming of grasslands, the objective of this paper was to assess the impacts of liming on soil pH, grass biomass production and total net GHG exchange (nitrous oxide (N2O), methane (CH4) and net carbon dioxide (CO2)). We collected 57 studies carried out at 88 sites and covering different countries and climatic zones. All of the studies examined showed that liming either reduced or had no effects on the emissions of two potent greenhouse gases (N2O and CH4). Though liming of grasslands can increase net CO2 emissions, the impact on total net GHG emission is minimal due to the higher global warming potential, over a 100-year period, of N2O and CH4 compared to that of CO2. Liming grassland delivers many potential advantages, which justify its wider adoption. It significantly ameliorates soil acidity, increases grass productivity, reduces fertiliser requirement and increases species richness. To realise the maximum benefit of liming grassland, we suggest that acidic soils should be moderately limed within the context of specific climates, soils and management.
Show more [+] Less [-]Pesticides in doormat and floor dust from homes close to treated fields : Spatio-temporal variance and determinants of occurrence and concentrations Full text
2022
M. Figueiredo, Daniel | Nijssen, Rosalie | J.M. Krop, Esmeralda | Buijtenhuijs, Daan | Gooijer, Yvonne | Lageschaar, Luuk | Duyzer, Jan | Huss, Anke | Mol, Hans | C.H. Vermeulen, Roel
Pesticides in doormat and floor dust from homes close to treated fields : Spatio-temporal variance and determinants of occurrence and concentrations Full text
2022
M. Figueiredo, Daniel | Nijssen, Rosalie | J.M. Krop, Esmeralda | Buijtenhuijs, Daan | Gooijer, Yvonne | Lageschaar, Luuk | Duyzer, Jan | Huss, Anke | Mol, Hans | C.H. Vermeulen, Roel
Indoor dust has been postulated as an important matrix for residential pesticide exposure. However, there is a lack of information on presence, concentrations and determinants of multiple pesticides in dust in residential homes close to treated fields. Our objective was to characterize the spatial and temporal variance of pesticides in house dust, study the use of doormats and floors as proxies for pesticides in indoor dust and identify determinants of occurrence and concentrations. Homes within 250 m from selected bulb fields were invited to participate. Homes within 20 km from these fields but not having agricultural fields within 500 m were selected as controls. House dust was vacuumed in all homes from floors (VFD) and from newly placed clean doormats (DDM). Sampling was done during two periods, when pesticides are used and not-used. For determination of 46 prioritized pesticides, a multi-residue extraction method was used. Most statistical analyses are focused on the 12 and 14 pesticides that were detected in >40% of DDM and VFD samples, respectively. Mixed models were used to evaluate relationships between possible determinants and pesticides occurrence and concentrations in DDM and VFD. 17 pesticides were detected in more than 50% of the homes in both matrixes. Concentrations differed by about a factor five between use and non-use periods among homes within 250 m of fields and between these homes and controls. For 7 pesticides there was a moderate to strong correlation (Spearman rho 0.30–0.75) between concentrations in DDM and VFD. Distance to agricultural fields and air concentrations were among the most relevant predictors for occurrence and levels of a given pesticide in DDM. Concentrations in dust are overall higher during application periods and closer to fields (<250 m) than further away. The omnipresence of pesticides in dust lead to residents being exposed all year round.
Show more [+] Less [-]Pesticides in doormat and floor dust from homes close to treated fields: Spatio-temporal variance and determinants of occurrence and concentrations Full text
2022
Figueiredo, Daniel | Nijssen, Rosalie | J.M. Krop, Esmeralda | Buijtenhuijs, Daan | Gooijer, Yvonne | Lageschaar, Luuk | Duyzer, Jan | Huss, Anke | Mol, Hans | C.H. Vermeulen, Roel
Indoor dust has been postulated as an important matrix for residential pesticide exposure. However, there is a lack of information on presence, concentrations and determinants of multiple pesticides in dust in residential homes close to treated fields. Our objective was to characterize the spatial and temporal variance of pesticides in house dust, study the use of doormats and floors as proxies for pesticides in indoor dust and identify determinants of occurrence and concentrations. Homes within 250 m from selected bulb fields were invited to participate. Homes within 20 km from these fields but not having agricultural fields within 500 m were selected as controls. House dust was vacuumed in all homes from floors (VFD) and from newly placed clean doormats (DDM). Sampling was done during two periods, when pesticides are used and not-used. For determination of 46 prioritized pesticides, a multi-residue extraction method was used. Most statistical analyses are focused on the 12 and 14 pesticides that were detected in >40% of DDM and VFD samples, respectively. Mixed models were used to evaluate relationships between possible determinants and pesticides occurrence and concentrations in DDM and VFD. 17 pesticides were detected in more than 50% of the homes in both matrixes. Concentrations differed by about a factor five between use and non-use periods among homes within 250 m of fields and between these homes and controls. For 7 pesticides there was a moderate to strong correlation (Spearman rho 0.30–0.75) between concentrations in DDM and VFD. Distance to agricultural fields and air concentrations were among the most relevant predictors for occurrence and levels of a given pesticide in DDM. Concentrations in dust are overall higher during application periods and closer to fields (<250 m) than further away. The omnipresence of pesticides in dust lead to residents being exposed all year round.
Show more [+] Less [-]Selective pressure on microbial communities in a drinking water aquifer – Geochemical parameters vs. micropollutants Full text
2022
Aldas-Vargas, Andrea | Hauptfeld, Ernestina | Hermes, Gerben D.A. | Atashgahi, Siavash | Smidt, Hauke | Rijnaarts, Huub H.M. | Sutton, Nora B.
Groundwater quality is crucial for drinking water production, but groundwater resources are increasingly threatened by contamination with pesticides. As pesticides often occur at micropollutant concentrations, they are unattractive carbon sources for microorganisms and typically remain recalcitrant. Exploring microbial communities in aquifers used for drinking water production is an essential first step towards understanding the fate of micropollutants in groundwater. In this study, we investigated the interaction between groundwater geochemistry, pesticide presence, and microbial communities in an aquifer used for drinking water production. Two groundwater monitoring wells in The Netherlands were sampled in 2014, 2015, and 2016. In both wells, water was sampled from five discrete depths ranging from 13 to 54 m and was analyzed for geochemical parameters, pesticide concentrations and microbial community composition using 16S rRNA gene sequencing and qPCR. Groundwater geochemistry was stable throughout the study period and pesticides were heterogeneously distributed at low concentrations (μg L−1 range). Microbial community composition was also stable throughout the sampling period. Integration of a unique dataset of chemical and microbial data showed that geochemical parameters and to a lesser extent pesticides exerted selective pressure on microbial communities. Microbial communities in both wells showed similar composition in the deeper aquifer, where pumping results in horizontal flow. This study provides insight into groundwater parameters that shape microbial community composition. This information can contribute to the future implementation of remediation technologies to guarantee safe drinking water production.
Show more [+] Less [-]Negative food dilution and positive biofilm carrier effects of microplastic ingestion by D. magna cause tipping points at the population level Full text
2022
Amariei, G. | Rosal, Roberto | Fernandez-Pinas, Francisca | Koelmans, A.A.
Negative food dilution and positive biofilm carrier effects of microplastic ingestion by D. magna cause tipping points at the population level Full text
2022
Amariei, G. | Rosal, Roberto | Fernandez-Pinas, Francisca | Koelmans, A.A.
Ingestion of microplastics by aquatic organisms is often harmful due to the dilution of their regular food with low-calorie microplastic particles, but can also be beneficial if nutritious biofilms are present on the microplastic surface. This begs the question: is ingestion of microplastic harmful or beneficial and can the net effect of the two mechanisms be quantified? Here, we quantified these harmful and beneficial effects on Daphnia magna, using dose-response tests with clean and biofouled microplastic respectively, and determined the trade-off between these counteracting effects. A population model was developed to calculate the isoclines for zero population growth, separating the regime where adverse food dilution dominated from that where the beneficial biofilm vector mechanism dominated. Our results show that the organisms grew better when exposed to biofouled microplastic compared to pristine microplastic. Very good model predictions (R2 = 0.868–0.991) of the effects of biofouled microplastic were obtained based on literature parameter values, with optimization required only for the two sub-model parameters driving the dose-effect relationships for pristine microplastic. These results contradict previous sudies were only pristine microplastic were used and demonstrate that the ruling paradigm of unambiguously adverse microplastic effects is not ecologically justifiable.
Show more [+] Less [-]Negative food dilution and positive biofilm carrier effects of microplastic ingestion by D. magna cause tipping points at the population level Full text
2022
Amariei, Georgiana | Rossal S., J. Roberto (Julio Roberto Rossal Salazar) | Fernández-Piñas, Francisca | Koelmans, Albert A.
Ingestion of microplastics by aquatic organisms is often harmful due to the dilution of their regular food with low-calorie microplastic particles, but can also be beneficial if nutritious biofilms are present on the microplastic surface. This begs the question: is ingestion of microplastic harmful or beneficial and can the net effect of the two mechanisms be quantified? Here, we quantified these harmful and beneficial effects on Daphnia magna, using dose-response tests with clean and biofouled microplastic respectively, and determined the trade-off between these counteracting effects. A population model was developed to calculate the isoclines for zero population growth, separating the regime where adverse food dilution dominated from that where the beneficial biofilm vector mechanism dominated. Our results show that the organisms grew better when exposed to biofouled microplastic compared to pristine microplastic. Very good model predictions (R² = 0.868–0.991) of the effects of biofouled microplastic were obtained based on literature parameter values, with optimization required only for the two sub-model parameters driving the dose-effect relationships for pristine microplastic. These results contradict previous sudies were only pristine microplastic were used and demonstrate that the ruling paradigm of unambiguously adverse microplastic effects is not ecologically justifiable.
Show more [+] Less [-]Cu phytoextraction and biomass utilization as essential trace element feed supplements for livestock Full text
2022
Wang, Xiaolin | Fernandes de Souza, Marcella | Mench, Michel J. | Li, Haichao | Ok, Yong Sik | Tack, Filip M.G. | Meers, Erik
Cu phytoextraction and biomass utilization as essential trace element feed supplements for livestock Full text
2022
Wang, Xiaolin | Fernandes de Souza, Marcella | Mench, Michel J. | Li, Haichao | Ok, Yong Sik | Tack, Filip M.G. | Meers, Erik
Copper (Cu), as an essential element, is added to animal feed to stimulate growth and prevent disease. The forage crop alfalfa (Medicago sativa L.) produced during Cu phytoextraction may be considered a biofortified crop to substitute the Cu feed additives for livestock production, beneficially alleviating Cu contamination in soils and reducing its input into agriculture systems. To assess this, alfalfa was grown in three similar soils with different Cu levels, i.e., 11, 439 and 779 mg kg⁻¹ for uncontaminated soil (A), moderately Cu-contaminated soil (B) and highly Cu-contaminated soil (C), respectively. EDDS (Ethylenediamine-N,N′-disuccinic acid) was applied to the soils seven days before the first cutting at four rates (0, 0.5, 2 and 5 mmol kg⁻¹) to enhance bioavailable Cu uptake. Alfalfa grew well in soils A and B but not in the highly Cu-contaminated soil. After applying EDDS, a significant biomass reduction of the first cutting shoot was only observed with 5 mmol kg⁻¹ EDDS in the highly Cu-contaminated soil, with a 45% (P < 0.05) decrease when compared to the control. Alfalfa grown in the three soils gradually wilted after the first cutting with 5 mmol kg⁻¹ EDDS, and Cu concentrations in the first cutting shoot were augmented strongly, by 250% (P < 0.05), 3500% (P < 0.05) and 6700% (P < 0.05) compared to the controls, respectively. Cu concentrations in alfalfa shoots were found to be higher in this study than in some fodder plants and further augmented in soils with higher Cu levels and with EDDS application. These findings suggest that alfalfa grown on clean soils or soils with up to 450 mg Cu kg⁻¹ (with appropriate EDDS dosages) has the potential to be considered as a partial Cu supplementation for livestock. This research laid the foundation for the integration between Cu-phytoextraction and Cu-biofortification for livestock.
Show more [+] Less [-]Cu phytoextraction and biomass utilization as essential trace element feed supplements for livestock Full text
2022
Wang, Xiaolin | Fernandes de Souza, Marcella | Mench, Michel, J | Li, Haichao | Ok, Yong Sik | Tack, Filip M.G. | Meers, Erik | Universiteit Gent = Ghent University = Université de Gand (UGENT) | Biodiversité, Gènes & Communautés (BioGeCo) ; Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Korea Polytechnic University (KPU)
International audience | Copper (Cu), as an essential element, is added to animal feed to stimulate growth and prevent disease. The forage crop alfalfa (Medicago sativa L.) produced during Cu phytoextraction may be considered a biofortified crop to substitute the Cu feed additives for livestock production, beneficially alleviating Cu contamination in soils and reducing its input into agriculture systems. To assess this, alfalfa was grown in three similar soils with different Cu levels, i.e., 11, 439 and 779 mg kg−1 for uncontaminated soil (A), moderately Cu-contaminated soil (B) and highly Cu-contaminated soil (C), respectively. EDDS (Ethylenediamine-N,N′-disuccinic acid) was applied to the soils seven days before the first cutting at four rates (0, 0.5, 2 and 5 mmol kg−1) to enhance bioavailable Cu uptake. Alfalfa grew well in soils A and B but not in the highly Cu-contaminated soil. After applying EDDS, a significant biomass reduction of the first cutting shoot was only observed with 5 mmol kg−1 EDDS in the highly Cu-contaminated soil, with a 45% (P < 0.05) decrease when compared to the control. Alfalfa grown in the three soils gradually wilted after the first cutting with 5 mmol kg−1 EDDS, and Cu concentrations in the first cutting shoot were augmented strongly, by 250% (P < 0.05), 3500% (P < 0.05) and 6700% (P < 0.05) compared to the controls, respectively. Cu concentrations in alfalfa shoots were found to be higher in this study than in some fodder plants and further augmented in soils with higher Cu levels and with EDDS application. These findings suggest that alfalfa grown on clean soils or soils with up to 450 mg Cu kg−1 (with appropriate EDDS dosages) has the potential to be considered as a partial Cu supplementation for livestock. This research laid the foundation for the integration between Cu-phytoextraction and Cu-biofortification for livestock.
Show more [+] Less [-]Robust strategies to eliminate endocrine disruptive estrogens in water resources Full text
2022
Vēlāyutan̲, T. A. | Rizwan, Komal | Adeel, Muhammad | Barceló, Damià | Awad, Youssef Ahmed | Iqbal, Hafiz M.N.
Robust strategies to eliminate endocrine disruptive estrogens in water resources Full text
2022
Vēlāyutan̲, T. A. | Rizwan, Komal | Adeel, Muhammad | Barceló, Damià | Awad, Youssef Ahmed | Iqbal, Hafiz M.N.
The widespread occurrence and ubiquitous distribution of estrogens, i.e., estrone (E1), estradiol (E2), and estriol (E3) in our water matrices, is an issue of global concern. Public and regulatory authorities are concerned and placing joint efforts to eliminate estrogens and related environmentally hazardous compounds, due to their toxic influences on the environmental matrices, ecology, and human health, even at low concentrations. However, most of the available literature is focused on the occurrence of estrogens in different water environments with limited treatment options. Thus, a detailed review to fully cover the several treatment processes is needed. This review comprehensively and comparatively discusses many physical, chemical, and biological-based treatments to eliminate natural estrogens, i.e., estrone (E1), estradiol (E2), and estriol (E3) and related synthetic estrogens, e.g., 17α-ethinylestradiol (EE2) and other related hazardous compounds. The covered techniques include adsorption, nanofiltration, ultrafiltration, ultrasonication, photocatalysis of estrogenic compounds, Fenton, Fenton-like and photo-Fenton degradation of estrogenic compounds, electro-Fenton degradation of estrogenic compounds, ozonation, and biological methods for the removal of estrogenic compounds are thoroughly discussed with suitable examples. The studies revealed that treatment plants based on chemical and biological approaches are cost-friendly for removing estrogenic pollutants. Further, there is a need to properly monitor and disposal of the usage of estrogenic drugs in humans and animals. Additional studies are required to explore a robust and more advanced oxidation treatment strategy that can contribute effectively to industrial-scale applications. This review may assist future investigations, monitoring, and removing estrogenic compounds from various environmental matrices. In concluding remarks, a way forward and future perspectives focusing on bridging knowledge gaps in estrogenic compounds removal are also proposed.
Show more [+] Less [-]Robust strategies to eliminate endocrine disruptive estrogens in water resources Full text
2022
Bilal, Muhammad | Rizwan, Komal | Adeel, Muhammad | Barceló, Damià | Awad, Youssef Ahmed | Iqbal, Hafiz M.N. | 0000-0001-5388-3183 | 0000-0002-8873-0491 | 0000-0003-4855-2720 | Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
The widespread occurrence and ubiquitous distribution of estrogens, i.e., estrone (E1), estradiol (E2), and estriol (E3) in our water matrices, is an issue of global concern. Public and regulatory authorities are concerned and placing joint efforts to eliminate estrogens and related environmentally hazardous compounds, due to their toxic influences on the environmental matrices, ecology, and human health, even at low concentrations. However, most of the available literature is focused on the occurrence of estrogens in different water environments with limited treatment options. Thus, a detailed review to fully cover the several treatment processes is needed. This review comprehensively and comparatively discusses many physical, chemical, and biological-based treatments to eliminate natural estrogens, i.e., estrone (E1), estradiol (E2), and estriol (E3) and related synthetic estrogens, e.g., 17α-ethinylestradiol (EE2) and other related hazardous compounds. The covered techniques include adsorption, nanofiltration, ultrafiltration, ultrasonication, photocatalysis of estrogenic compounds, Fenton, Fenton-like and photo-Fenton degradation of estrogenic compounds, electro-Fenton degradation of estrogenic compounds, ozonation, and biological methods for the removal of estrogenic compounds are thoroughly discussed with suitable examples. The studies revealed that treatment plants based on chemical and biological approaches are cost-friendly for removing estrogenic pollutants. Further, there is a need to properly monitor and disposal of the usage of estrogenic drugs in humans and animals. Additional studies are required to explore a robust and more advanced oxidation treatment strategy that can contribute effectively to industrial-scale applications. This review may assist future investigations, monitoring, and removing estrogenic compounds from various environmental matrices. In concluding remarks, a way forward and future perspectives focusing on bridging knowledge gaps in estrogenic compounds removal are also proposed. | Consejo Nacional de Ciencia y Tecnología (CONACyT) Mexico is thankfully acknowledged for partially supporting this work under Sistema Nacional de Investigadores (SNI) program awarded to Hafiz M. N. Iqbal (CVU: 735340). | Peer reviewed
Show more [+] Less [-]Presence of pesticides in the environment, transition into organic food, and implications for quality assurance along the European organic food chain – A review Full text
2022
Schleiffer, Mirjam | Speiser, Bernhard
Presence of pesticides in the environment, transition into organic food, and implications for quality assurance along the European organic food chain – A review Full text
2022
Schleiffer, Mirjam | Speiser, Bernhard
The use of synthetic pesticides is not allowed in organic production, but traces of synthetic pesticides are regularly detected in organic food. To safeguard the integrity of organic production, organic certifiers are obliged to investigate the causes for pesticide residues on organic food, entailing high costs to the organic sector. Such residues can have various origins, including both fraud and unintentional contamination from the environment. Because the knowledge about contamination from environmental sources is scattered, this review provides an overview of pathways for unintentional and technically unavoidable contamination of organic food with synthetic pesticides in Europe. It shows that synthetic pesticides are widely present in all environmental compartments. They originate from applications in the region, in distant areas or from historical use. Transition into the food chain has been demonstrated by various studies. However, large uncertainties remain regarding the true pesticide contamination of the environment, their dynamics and the contamination risks for the food chain. Organic operators can take certain measures to reduce the risks of pesticide contamination of their products, but a certain extent of pesticide contamination is technically unavoidable. The present paper indicates that (i) a potential risk for pesticide residues exists on all organic crops and thus organic operators cannot meet a ‘zero-tolerance’ approach regarding pesticide residues at the moment. (ii) Applying a residue concentration threshold to distinguish between cases of fraud and unavoidable contamination for all pesticides is not adequate given the variability of contamination. More reliable answers can be obtained with a case-by-case investigation, where evidence for all possible origins of pesticide residues is collected and the likelihood of unavoidable contamination and fraud are estimated. Ultimately, for organic certification bodies and control authorities it will remain a challenge to determine whether a pesticide residue is due to neglect of production rules or technically unavoidable.
Show more [+] Less [-]Presence of pesticides in the environment, transition into organic food, and implications for quality assurance along the European organic food chain – A review Full text
2022
Schleiffer, Mirjam | Speiser, Bernhard
The use of synthetic pesticides is not allowed in organic production, but traces of synthetic pesticides are regularly detected in organic food. To safeguard the integrity of organic production, organic certifiers are obliged to investigate the causes for pesticide residues on organic food, entailing high costs to the organic sector. Such residues can have various origins, including both fraud and unintentional contamination from the environment. Because the knowledge about contamination from environmental sources is scattered, this review provides an overview of pathways for unintentional and technically unavoidable contamination of organic food with synthetic pesticides in Europe. It shows that synthetic pesticides are widely present in all environmental compartments. They originate from applications in the region, in distant areas or from historical use. Transition into the food chain has been demonstrated by various studies. However, large uncertainties remain regarding the true pesticide contamination of the environment, their dynamics and the contamination risks for the food chain. Organic operators can take certain measures to reduce the risks of pesticide contamination of their products, but a certain extent of pesticide contamination is technically unavoidable. The present paper indicates that (i) a potential risk for pesticide residues exists on all organic crops and thus organic operators cannot meet a ‘zero-tolerance’ approach regarding pesticide residues at the moment. (ii) Applying a residue concentration threshold to distinguish between cases of fraud and unavoidable contamination for all pesticides is not adequate given the variability of contamination. More reliable answers can be obtained with a case-by-case investigation, where evidence for all possible origins of pesticide residues is collected and the likelihood of unavoidable contamination and fraud are estimated. Ultimately, for organic certification bodies and control authorities it will remain a challenge to determine whether a pesticide residue is due to neglect of production rules or technically unavoidable.
Show more [+] Less [-]Wastewater-based epidemiological surveillance to monitor the prevalence of SARS-CoV-2 in developing countries with onsite sanitation facilities Full text
2022
Jakariya, Md | Ahmed, Firoz | Islam, Md Aminul | Al Marzan, Abdullah | Hasan, Mohammad Nayeem | Hossain, Maqsud | Ahmed, Tanvir | Hossain, Ahmed | Reza, Hasan Mahmud | Hossen, Foysal | Nahla, Turasa | Rahman, Mohammad Moshiur | Bahadur, Newaz Mohammed | Islam, Md Tahmidul | Didar-ul-Alam, Md | Mow, Nowrin | Jahan, Hasin | Barceló, Damià | Bibby, Kyle | Bhattacharya, Prosun
Wastewater-based epidemiological surveillance to monitor the prevalence of SARS-CoV-2 in developing countries with onsite sanitation facilities Full text
2022
Jakariya, Md | Ahmed, Firoz | Islam, Md Aminul | Al Marzan, Abdullah | Hasan, Mohammad Nayeem | Hossain, Maqsud | Ahmed, Tanvir | Hossain, Ahmed | Reza, Hasan Mahmud | Hossen, Foysal | Nahla, Turasa | Rahman, Mohammad Moshiur | Bahadur, Newaz Mohammed | Islam, Md Tahmidul | Didar-ul-Alam, Md | Mow, Nowrin | Jahan, Hasin | Barceló, Damià | Bibby, Kyle | Bhattacharya, Prosun
Wastewater-based epidemiology (WBE) has emerged as a valuable approach for forecasting disease outbreaks in developed countries with a centralized sewage infrastructure. On the other hand, due to the absence of well-defined and systematic sewage networks, WBE is challenging to implement in developing countries like Bangladesh where most people live in rural areas. Identification of appropriate locations for rural Hotspot Based Sampling (HBS) and urban Drain Based Sampling (DBS) are critical to enable WBE based monitoring system. We investigated the best sampling locations from both urban and rural areas in Bangladesh after evaluating the sanitation infrastructure for forecasting COVID-19 prevalence. A total of 168 wastewater samples were collected from 14 districts of Bangladesh during each of the two peak pandemic seasons. RT-qPCR commercial kits were used to target ORF1ab and N genes. The presence of SARS-CoV-2 genetic materials was found in 98% (165/168) and 95% (160/168) wastewater samples in the first and second round sampling, respectively. Although wastewater effluents from both the marketplace and isolation center drains were found with the highest amount of genetic materials according to the mixed model, quantifiable SARS-CoV-2 RNAs were also identified in the other four sampling sites. Hence, wastewater samples of the marketplace in rural areas and isolation centers in urban areas can be considered the appropriate sampling sites to detect contagion hotspots. This is the first complete study to detect SARS-CoV-2 genetic components in wastewater samples collected from rural and urban areas for monitoring the COVID-19 pandemic. The results based on the study revealed a correlation between viral copy numbers in wastewater samples and SARS-CoV-2 positive cases reported by the Directorate General of Health Services (DGHS) as part of the national surveillance program for COVID-19 prevention. The findings of this study will help in setting strategies and guidelines for the selection of appropriate sampling sites, which will facilitate in development of comprehensive wastewater-based epidemiological systems for surveillance of rural and urban areas of low-income countries with inadequate sewage infrastructure.
Show more [+] Less [-]Wastewater-based epidemiological surveillance to monitor the prevalence of SARS-CoV-2 in developing countries with onsite sanitation facilities Full text
2022
Jakariya, Md | Ahmed, Firoz | Islam, Md. Amidul | Al Marzan, Abdullah | Hasan, Mohammad Nayeem | Hossain, Maqsud | Ahmed, Tanvir | Hossain, Ahmed | Reza, Hasan Mahmud | Hossen, Foysal | Nahla, Turasa | Rahman, Mohammad Moshiur | Bahadur, Newaz Mohammed | Islam, Md Tahmidul | Didar-Ul-Alam, Md | Mow, Nowrin | Jahan, Hasin | Barceló, Damià | Bibby, Kyle | Bhattacharya, Prosun | 0000-0002-4781-4736 | 0000-0002-6235-2277 | 0000-0002-1809-0978 | 0000-0002-8873-0491 | 0000-0003-4350-9950 | Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
Wastewater-based epidemiology (WBE) has emerged as a valuable approach for forecasting disease outbreaks in developed countries with a centralized sewage infrastructure. On the other hand, due to the absence of well-defined and systematic sewage networks, WBE is challenging to implement in developing countries like Bangladesh where most people live in rural areas. Identification of appropriate locations for rural Hotspot Based Sampling (HBS) and urban Drain Based Sampling (DBS) are critical to enable WBE based monitoring system. We investigated the best sampling locations from both urban and rural areas in Bangladesh after evaluating the sanitation infrastructure for forecasting COVID-19 prevalence. A total of 168 wastewater samples were collected from 14 districts of Bangladesh during each of the two peak pandemic seasons. RT-qPCR commercial kits were used to target ORF1ab and N genes. The presence of SARS-CoV-2 genetic materials was found in 98% (165/168) and 95% (160/168) wastewater samples in the first and second round sampling, respectively. Although wastewater effluents from both the marketplace and isolation center drains were found with the highest amount of genetic materials according to the mixed model, quantifiable SARS-CoV-2 RNAs were also identified in the other four sampling sites. Hence, wastewater samples of the marketplace in rural areas and isolation centers in urban areas can be considered the appropriate sampling sites to detect contagion hotspots. This is the first complete study to detect SARS-CoV-2 genetic components in wastewater samples collected from rural and urban areas for monitoring the COVID-19 pandemic. The results based on the study revealed a correlation between viral copy numbers in wastewater samples and SARS-CoV-2 positive cases reported by the Directorate General of Health Services (DGHS) as part of the national surveillance program for COVID-19 prevention. The findings of this study will help in setting strategies and guidelines for the selection of appropriate sampling sites, which will facilitate in development of comprehensive wastewater-based epidemiological systems for surveillance of rural and urban areas of low-income countries with inadequate sewage infrastructure. | This research was supported by Water Aid Bangladesh, North South University, Dhaka, COVID-19 Diagnostic Lab, Department of Microbiology, Noakhali Science and Technology University (NSTU), Noakhali, Bangladesh, the International Training Network of Bangladesh University of Engineering and Technology (ITN-BUET) - Centre for Water Supply and Waste Management, and KTH Royal Institute of Technology, Sweden. We acknowledge the sincere help and support of the staff and volunteers of NSTU-COVID-19 Diagnostic Lab, Noakhali Science and Technology University, Bangladesh during the different phases of the study. PB and MTI acknowledge the Life Science Technology Platform, Science for Life Laboratory for the seed funding to initiate the wastewater-based epidemiological studies for SARS-CoV-2 in Bangladesh. We would also like to acknowledge the two anonymous reviewers for their critical comments as well as their thoughtful insights, which has significantly improved the manuscript. | Peer reviewed
Show more [+] Less [-]A closer look on the variety and abundance of the faecal resistome of wild boar Full text
2022
Dias, Diana | Fonseca, Carlos | Mendo, Sónia | Caetano, Tânia
A closer look on the variety and abundance of the faecal resistome of wild boar Full text
2022
Dias, Diana | Fonseca, Carlos | Mendo, Sónia | Caetano, Tânia
Antimicrobial resistance (AMR) is a serious problem for public and animal health, and also for the environment. Monitoring and reporting the occurrence of AMR determinants and bacteria with the potential to disseminate is a priority for health surveillance programs around the world and critical to the One Health concept. Wildlife is a reservoir of AMR, and human activities can strongly influence their resistome.The main goal of this work was to study the resistome of wild boar faecal microbiome, one of the most important game species in Europe using metagenomic and culturing approaches. The most abundant genes identified by the high-throughput qPCR array encode mobile genetic elements, including integrons, which can promote the dissemination of AMR determinants. A diverse set of genes (n = 62) conferring resistance to several classes of antibiotics (ARGs), some of them included in the WHO list of critically important antimicrobials were also detected. The most abundant ARGs confer resistance to tetracyclines and aminoglycosides. The phenotypic resistance of E. coli and Enterococcus spp. were also investigated, and together supported the metagenomic results.As the wild boar is an omnivorous animal, it can be a disseminator of AMR bacteria and ARGs to livestock, humans, and the environment. This study supports that wild boar can be a key sentinel species in ecosystems surveillance and should be included in National Action Plans to fight AMR, adopting a One Health approach.
Show more [+] Less [-]A closer look on the variety and abundance of the faecal resistome of wild boar Full text
2022
Dias, Diana | Fonseca, Carlos | Mendo, Sónia | Caetano, Tânia
Antimicrobial resistance (AMR) is a serious problem for public and animal health, and also for the environment. Monitoring and reporting the occurrence of AMR determinants and bacteria with the potential to disseminate is a priority for health surveillance programs around the world and critical to the One Health concept. Wildlife is a reservoir of AMR, and human activities can strongly influence their resistome. The main goal of this work was to study the resistome of wild boar faecal microbiome, one of the most important game species in Europe using metagenomic and culturing approaches. The most abundant genes identified by the high-throughput qPCR array encode mobile genetic elements, including integrons, which can promote the dissemination of AMR determinants. A diverse set of genes (n = 62) conferring resistance to several classes of antibiotics (ARGs), some of them included in the WHO list of critically important antimicrobials were also detected. The most abundant ARGs confer resistance to tetracyclines and aminoglycosides. The phenotypic resistance of E. coli and Enterococcus spp. were also investigated, and together supported the metagenomic results. As the wild boar is an omnivorous animal, it can be a disseminator of AMR bacteria and ARGs to livestock, humans, and the environment. This study supports that wild boar can be a key sentinel species in ecosystems surveillance and should be included in National Action Plans to fight AMR, adopting a One Health approach. | published
Show more [+] Less [-]Organic fertilizer activates soil beneficial microorganisms to promote strawberry growth and soil health after fumigation Full text
2022
Li, Qingjie | Zhang, Daqi | Song, Zhaoxin | Ren, Lirui | Jin, Xi | Fang, Wensheng | Yan, Dongdong | Li, Yuan | Wang, Qiuxia | Cao, Aocheng
Organic fertilizer activates soil beneficial microorganisms to promote strawberry growth and soil health after fumigation Full text
2022
Li, Qingjie | Zhang, Daqi | Song, Zhaoxin | Ren, Lirui | Jin, Xi | Fang, Wensheng | Yan, Dongdong | Li, Yuan | Wang, Qiuxia | Cao, Aocheng
Soil fumigants aim to control soil-borne diseases below levels that affect economic crop production, but their use also reduces the abundance of beneficial microorganisms. Previous studies have shown that adding various types of fertilizers to soil after fumigation can reshape the soil microbial community and regulate crop growth. We fumigated soil with dazomet (DZ) that had been cropped continuously for more than 20 years. After fumigation we applied silicon fertilizer, potassium humate organic fertilizer, Bacillus microbial fertilizer or a mixture of the last two. We studied the effects of different fertilizers treatments on the soil's physicochemical properties, enzyme activities, key soil pathogens and beneficial microbes. We found that fertilizers applied after fumigation promoted soil beneficial microorganisms (such as Fimicutes, Chloroflexi, Bacillus and Actinomadura) restoration; increased Fusarium and Phytophthora pathogen mortality, the content of ammonium nitrogen, sucrase enzyme activity; and increased strawberry fruit yield. A significant increase in strawberry yield was positively correlated with increases in beneficial microorganisms such as Gemmatimonadota, Firmicutes, Bacillus and Flavisolibacter. We concluded that organic fertilizer applied after fumigation significantly increased the number of beneficial microorganisms, improved the physicochemical properties of the soil, increased soil enzyme activities, inhibited the growth of soil pathogens to increase strawberry fruit yield. In summary, organic fertilizer activated soil beneficial microorganisms after soil fumigation, promoted soil health, and increased strawberry fruit yield.
Show more [+] Less [-]Organic fertilizer activates soil beneficial microorganisms to promote strawberry growth and soil health after fumigation Full text
2022
Li, Q. | Zhang, D. | Song, Zhaoxin | Ren, L. | Jin, X. | Fang, W. | Yan, D. | Li, Yuan | Wang, Q. | Cao, A.
peer reviewed | Soil fumigants aim to control soil-borne diseases below levels that affect economic crop production, but their use also reduces the abundance of beneficial microorganisms. Previous studies have shown that adding various types of fertilizers to soil after fumigation can reshape the soil microbial community and regulate crop growth. We fumigated soil with dazomet (DZ) that had been cropped continuously for more than 20 years. After fumigation we applied silicon fertilizer, potassium humate organic fertilizer, Bacillus microbial fertilizer or a mixture of the last two. We studied the effects of different fertilizers treatments on the soil's physicochemical properties, enzyme activities, key soil pathogens and beneficial microbes. We found that fertilizers applied after fumigation promoted soil beneficial microorganisms (such as Fimicutes, Chloroflexi, Bacillus and Actinomadura) restoration; increased Fusarium and Phytophthora pathogen mortality, the content of ammonium nitrogen, sucrase enzyme activity; and increased strawberry fruit yield. A significant increase in strawberry yield was positively correlated with increases in beneficial microorganisms such as Gemmatimonadota, Firmicutes, Bacillus and Flavisolibacter. We concluded that organic fertilizer applied after fumigation significantly increased the number of beneficial microorganisms, improved the physicochemical properties of the soil, increased soil enzyme activities, inhibited the growth of soil pathogens to increase strawberry fruit yield. In summary, organic fertilizer activated soil beneficial microorganisms after soil fumigation, promoted soil health, and increased strawberry fruit yield. © 2021
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