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UV-Light Catalyzed Reduction of Cr(VI) by Graphene Oxide and its Significance for Cr(VI) Transformation in an Oxisol Full text
2019
Zhang, Yali | Yang, Jiewen
Due to its unique properties, the potential application of graphene oxide (GO) in treating environmental pollution has attracted wide attention. In this study, the UV-light catalyzed photoreduction of Cr(VI) by GO was assessed as well as its adsorption toward Cr(VI), and FTIR and XPS techniques were adopted to reveal the underlying mechanisms. The surfaces of GO were negatively charged across the pH range examined. Therefore, the increase in pH resulted in the decrease in Cr(VI) adsorption due to the enhancement in repulsion between Cr(VI) and GO surfaces. The kinetic studies showed that the Cr(VI) adsorption proceeded quickly during the 0–24 h stage, followed by a slow process until to the end of reaction (96 h). Additionally, the kinetic data could be properly described with the pseudo-first-order rate equation (R² = 0.9754). With the UV-light irradiation, Cr(VI) reduction in the presence of 0.5 g L⁻¹ GO was observed with the concentration of Cr(VI) decreased from 0.1 mM to zero within 12 h at pH 3.0, while which would be suppressed as the pH increased. The addition of EDTA could enhance the photocatalytic Cr(VI) reduction due to the consumption of the photogenerated holes (h⁺), leaving more Cr(III) species present in solution. The generation of h⁺ was further confirmed by the complete photodegradation of 4-CP during 48 h. Moreover, the changes in FTIR and XPS spectrum of GO before and after reaction indicated the oxidization of epoxy and hydroxyl groups by holes or reduction by electrons was involved in the photoreaction. The photoreduction of Cr(VI) could was also observed in an oxisol with the existence of GO, with the disappearance of 0.1 mM of aqueous Cr(VI) at pH 4.40 after 36 h. The results above could enhance our understanding on the essence of photoreactivity of GO, and indicated that the potential release of GO into soil environments would be helpful to eliminate the risk posed by Cr(VI) through the UV-light irradiated photocatalytic reduction.
Show more [+] Less [-]Treatment of Hexavalent Chromium Contaminated Wastewater Using Activated Carbon Derived from Coconut Shell Loaded by Silver Nanoparticles: Batch Experiment Full text
2019
Nguyễn, Lan Hương | Nguyễn, Thị Minh Phương | Van, Huu Tap | Vũ, Xuân Hòa | Ha, Thi Lan Anh | Nguyen, Thi Hong Vien | Nguyễn, Xuân Hoàn | Nguyen, X.C.
Chromium (Cr(VI)) causes serious impacts on the environment and human. In this study, the commercial activated carbon-loaded silver nanoparticle (AgNPs-AC) was used as a new adsorbent to remove Cr(VI) from the aqueous solution. Batch adsorption experiments were conducted to evaluate the effects of pH, the initial concentration of Cr(VI), contact time, and dose of AgNPs-AC upon removal of Cr(VI) from the aqueous solution. The results showed that at pH of 4, the contact time of 150 min, 40 mg/L of initial Cr(VI), and dosage of 20 mg AgNPs-AC/25 mL were the most suitable condition for absorption of Cr(VI) onto AgNPs-AC from the aqueous solution. The maximum adsorption capacity achieved at abovementioned conditions was 27.70 mg/g. Meanwhile, the adsorption capacity of commercial activated carbon from a coconut shell obtained only 7.61 mg/g in the case where the initial Cr(VI) concentration is 10 mg/L and the contact time is 60 min. The adsorption kinetic data were found to fit best to the pseudo-second-order model with a high correlation coefficient (R² = 0.9597). The adsorption process was controlled by chemisorption due to the appearance of new chemical species on the adsorbent surface. The positively charged functional groups rapidly reduced Cr(VI) to Cr(III), and Cr(III) was subsequently adsorbed by the carboxyl group on the adsorbent’s surface. From this study, it can be concluded that AgNPs-AC is a fully promising, low-cost adsorbent in the removal of Cr(VI) from the aqueous solution.
Show more [+] Less [-]Comparison of the Removal of an Anionic Dye from Aqueous Solutions by Adsorption with Organically Modified Clays and their Composites Full text
2019
Saavedra-Labastida, E. | Díaz-Nava, M. C. | Illescas, J. | Muro, C.
In this study, organoclay and clay-biopolymer composites were evaluated for the adsorption process of an anionic red dye, Allura Red (AR), in aqueous solution. For this purpose, the cationic exchange capacity (CEC) of a natural bentonite was calculated, and it was modified with the cationic surfactant hexadecyltrimethylammonium bromide (OB). Furthermore, a commercial montmorillonite modified with dimethyldialkyl ammonium (OM) was also employed. These organo-modified clays were used for the synthesis of two series of composites, with alginate as the polymer matrix, and were identified as OBC and OMC, respectively; composites were obtained in the wet (W) and dry (D) states. The adsorbent materials were characterized by means of infrared spectroscopy (FTIR), thermogravimetric analysis (TGA), scanning electron microscopy (SEM), and dispersive energy spectroscopy (EDS). Afterwards, kinetics and isotherms studies were performed in batch systems, with dye solutions of different concentrations, without pH adjustment. Some parameters were evaluated, such as the variation of the pH value of the solution and the concentration of the dye with the organoclays and composites. Chemisorption was considered as the main mechanism that follows the adsorption processes of AR. Results demonstrated that the pseudo-second order was the kinetics model that best described the adsorption process of the AR dye, with both, hydrated and dry composites. Finally, the Freundlich and the Langmuir–Freundlich isotherms were the best models that described the hydrated and dry composites behavior, respectively.
Show more [+] Less [-]Geochemical characterization of soil samples from gold mining areas using PIXE spectroscopy Full text
2019
Olise, Felix Samuel | Adeojo, Samuel Adedigba | Owoade, Oyediran Kayode | Oketayo, Oyebamiji Oyedele | Adekola, Solomon Adeniyi | Akinlua, Akinsehinwa
Particle-induced x-ray emission (PIXE) spectroscopy has been used to characterize soil samples from two relatively old gold mine sites (Iperindo and Itagunmodi) in the Ilesha schist belt of Southwestern Nigeria. This is with a view to identifying the indicator or pathfinder elements of gold for fingerprinting and toxicity potential assessment purposes. Average elemental concentrations of 19 major, minor, and trace elements were determined, and the geochemical data of Mn, Ni, Cu, Zn, Ag, As, Pb, and Au together with multivariate factor and cluster statistical analyses allowed to identify As and Ag as the pathfinder elements of gold. The high concentration of the determined pathfinder elements (As and Ag) as well as other toxic metals (Pb and Cu) implies a relatively high metal contamination risk to the miners and the ecosystem. The major hazard is represented by the abandoned mining wastes, pits, and ponds, already serving as fish ponds.
Show more [+] Less [-]Environmental variations mediate duckweed (Lemna minor L.) sensitivity to copper exposure through phenotypic plasticity Full text
2019
Roubeau Dumont, Eva | Larue, Camille | Pujol, Benoît | Lamaze, Thierry | Elger, Arnaud
Environmental variations mediate duckweed (Lemna minor L.) sensitivity to copper exposure through phenotypic plasticity Full text
2019
Roubeau Dumont, Eva | Larue, Camille | Pujol, Benoît | Lamaze, Thierry | Elger, Arnaud
Environmentally mediated sensitivity of Lemna minor to copper (Cu) was evaluated for the first time in three experiments: the effects of two levels of nutrient concentration, light irradiance or Cu pre-exposure were tested. Various Cu concentrations (ranging from 0.05 to 0.25 mg/L) were used to assess the sensitivity of L. minor to this metal, using one common strain previously acclimatized to two different levels of light intensity, nutrient enrichment and Cu pre-exposure. Our results showed a phenotypic plastic response of the relative growth rates based on frond number and fresh mass production, and maximum quantum yield of photosystem II (Fᵥ/Fₘ). Growth was affected by the three environmental conditions both prior and during Cu exposure, whereas Fᵥ/Fₘ was mostly affected during Cu exposure. Copper significantly influenced all the parameters measured in the three experiments. Environmental conditions significantly modified L. minor sensitivity to Cu in all experiments, with up to twofold difference depending on the treatment. Growth rate was the parameter that was most impacted. Our study revealed for the first time the existence of phenotypic plasticity in L. minor sensitivity to chemical contamination, and implies that environmental context needs to be taken into account for a relevant risk assessment.
Show more [+] Less [-]Environmental variations mediate duckweed (Lemna minor L.) sensitivity to copper exposure through phenotypic plasticity Full text
2019
Roubeau Dumont, Eva | Larue, Camille | Pujol, Benoît | Lamaze, Thierry | Elger, Arnaud | Laboratoire Ecologie Fonctionnelle et Environnement (LEFE) ; Institut Ecologie et Environnement - CNRS Ecologie et Environnement (INEE-CNRS) ; Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3) ; Communauté d'universités et établissements de Toulouse (Comue de Toulouse)-Communauté d'universités et établissements de Toulouse (Comue de Toulouse)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP) ; Communauté d'universités et établissements de Toulouse (Comue de Toulouse) | Evolution et Diversité Biologique (EDB) ; Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3) ; Communauté d'universités et établissements de Toulouse (Comue de Toulouse)-Communauté d'universités et établissements de Toulouse (Comue de Toulouse)-Centre National de la Recherche Scientifique (CNRS) | Centre de recherches insulaires et observatoire de l'environnement (CRIOBE) ; Université de Perpignan Via Domitia (UPVD)-École Pratique des Hautes Études (EPHE) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Centre National de la Recherche Scientifique (CNRS) | Centre d'études spatiales de la biosphère (CESBIO) ; Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3) ; Communauté d'universités et établissements de Toulouse (Comue de Toulouse)-Communauté d'universités et établissements de Toulouse (Comue de Toulouse)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
International audience | Environmentally mediated sensitivity of Lemna minor to copper (Cu) was evaluated for the first time in three experiments: the effects of two levels of nutrient concentration, light irradiance or Cu pre-exposure were tested. Various Cu concentrations (ranging from 0.05 to 0.25 mg/L) were used to assess the sensitivity of L. minor to this metal, using one common strain previously acclimatized to two different levels of light intensity, nutrient enrichment and Cu pre-exposure. Our results showed a phenotypic plastic response of the relative growth rates based on frond number and fresh mass production, and maximum quantum yield of photosystem II (Fv/Fm). Growth was affected by the three environmental conditions both prior and during Cu exposure, whereas Fv/Fm was mostly affected during Cu exposure. Copper significantly influenced all the parameters measured in the three experiments. Environmental conditions significantly modified L. minor sensitivity to Cu in all experiments, with up to twofold difference depending on the treatment. Growth rate was the parameter that was most impacted. Our study revealed for the first time the existence of phenotypic plasticity in L. minor sensitivity to chemical contamination, and implies that environmental context needs to be taken into account for a relevant risk assessment.
Show more [+] Less [-]Mercury Concentration in Technosols and Alder Tissue from a Plantation on a Combustion Waste Disposal Site Full text
2019
Woś, Bartłomiej | Sroka, Katarzyna | Józefowska, Agnieszka | Pietrzykowski, Marcin
Mercury Concentration in Technosols and Alder Tissue from a Plantation on a Combustion Waste Disposal Site Full text
2019
Woś, Bartłomiej | Sroka, Katarzyna | Józefowska, Agnieszka | Pietrzykowski, Marcin
Combustion of fossil fuels including coal is one of the sources of mercury pollution. Combustion waste from fly ash disposal sites poses a problem for the environment and constitutes a potential source of Hg, thus phytostabilisation is a crucial goal in the mitigation of fossil fuel impact. The paper presents mercury (Hg) concentration in technosols from combustion waste and in individual biomass components (fine roots, bark, stem wood and leaves) of alder species (black, gray and green alder) introduced as part of a long-term experiment to develop a method of phytostabilisation and afforestation of a lignite combustion disposal site. Mercury content in the combustion waste was elevated compared to the data for natural soils from uncontaminated forest areas, however, it did not exceed the amounts considered to be toxic. Hg content in technosols was related to clay and silt fraction content and phosphorus content. Mercury in the alder biomass accumulated mainly in the underground part, especially in the fine roots and displayed a positive correlation with acid and alkaline phosphatase and sulfur content, with no differences in the accumulation of Hg between the alder species. The obtained results indicate that the fine roots are the frontier of Hg biosorption in developed alder systems on combustion waste disposal sites.
Show more [+] Less [-]Mercury Concentration in Technosols and Alder Tissue from a Plantation on a Combustion Waste Disposal Site Full text
Bartłomiej Woś | Katarzyna Sroka | Agnieszka Józefowska | Marcin Pietrzykowski
Combustion of fossil fuels including coal is one of the sources of mercury pollution. Combustion waste from fly ash disposal sites poses a problem for the environment and constitutes a potential source of Hg, thus phytostabilisation is a crucial goal in the mitigation of fossil fuel impact. The paper presents mercury (Hg) concentration in technosols from combustion waste and in individual biomass components (fine roots, bark, stem wood and leaves) of alder species (black, gray and green alder) introduced as part of a long-term experiment to develop a method of phytostabilisation and afforestation of a lignite combustion disposal site. Mercury content in the combustion waste was elevated compared to the data for natural soils from uncontaminated forest areas, however, it did not exceed the amounts considered to be toxic. Hg content in technosols was related to clay and silt fraction content and phosphorus content. Mercury in the alder biomass accumulated mainly in the underground part, especially in the fine roots and displayed a positive correlation with acid and alkaline phosphatase and sulfur content, with no differences in the accumulation of Hg between the alder species. The obtained results indicate that the fine roots are the frontier of Hg biosorption in developed alder systems on combustion waste disposal sites. | Trace elements, Contamination, Mercury, Reclamation, Fly ash | 70 | 1-13 | 11
Show more [+] Less [-]Investigating the Effect of Medicago sativa L. and Trifolium pratense L. Root Exudates on PAHs Bioremediation in an Aged-Contaminated Soil Full text
2019
Davin, Marie | Starren, Amandine | Marit, Emilie | Lefébure, Kévin | Fauconnier, Marie-Laure | Colinet, Gilles
Investigating the Effect of Medicago sativa L. and Trifolium pratense L. Root Exudates on PAHs Bioremediation in an Aged-Contaminated Soil Full text
2019
Davin, Marie | Starren, Amandine | Marit, Emilie | Lefébure, Kévin | Fauconnier, Marie-Laure | Colinet, Gilles
Polycyclic aromatic hydrocarbons (PAH) are persistent organic compounds of major concern that accumulate in the environment, especially soils, and require remediation. Researches to develop bioremediation and phytoremediation (alternative eco-friendly technologies) are being conducted. First, a bioaccessibility measurement protocol was adapted to a brownfield soil using Tenax® beads in order to compare PAHs bioaccessibility in soil samples. PAHs desorption kinetics were established, described by a site distribution model, and a common extraction time was calculated (48 h). Second, the role of two Fabaceae (Medicago sativa L. or Trifolium pratense L.) root exudates in enhancing PAHs bioaccessibility and biodegradation in the studied soil was evaluated during microcosms experiments (28 °C). The CO₂ emissions were significantly higher in presence of T. pratense exudates; the dehydrogenase activities showed improvements of the soil microbial activity in presence of two types of root exudates compared to untreated soil samples; the PAHs residual contents decreased more in untreated samples than in the presence of T. pratense exudates; and M. sativa exudates lowered PAHs bioaccessibility but not residual contents.
Show more [+] Less [-]Investigating the Effect of Medicago sativa L. and Trifolium pratense L. Root Exudates on PAHs Bioremediation in an Aged-Contaminated Soil Full text
2019
Davin, Marie | Starren, Amandine | Marit, Emilie | Lefébure, Kévin | Fauconnier, Marie-Laure | Colinet, Gilles
peer reviewed | Polycyclic aromatic hydrocarbons (PAH) are persistent organic compounds of major concern that accumulate in the environment, especially soils, and require remediation. Researches to develop bioremediation and phytoremediation (alternative eco-friendly technologies) are being conducted. First, a bioaccessibility measurement protocol was adapted to a brownfield soil using Tenax® beads in order to compare PAHs bioaccessibility in soil samples. PAHs desorption kinetics were established, described by a site distribution model, and a common extraction time was calculated (48 h). Second, the role of two Fabaceae (Medicago sativa L. or Trifolium pratense L.) root exudates in enhancing PAHs bioaccessibility and biodegradation in the studied soil was evaluated during microcosms experiments (28 °C). The CO2 emissions were significantly higher in presence of T. pratense exudates; the dehydrogenase activities showed improvements of the soil microbial activity in presence of two types of root exudates compared to untreated soil samples; the PAHs residual contents decreased more in untreated samples than in the presence of T. pratense exudates; and M. sativa exudates lowered PAHs bioaccessibility but not residual contents.
Show more [+] Less [-]Influence of electronic cigarette vaping on the composition of indoor organic pollutants, particles, and exhaled breath of bystanders Full text
2019
van Drooge, Barend L. | Marco, Esther | Perez, Noemi | Grimalt, Joan O.
Influence of electronic cigarette vaping on the composition of indoor organic pollutants, particles, and exhaled breath of bystanders Full text
2019
van Drooge, Barend L. | Marco, Esther | Perez, Noemi | Grimalt, Joan O.
The changes of particles and organic pollutants in indoor atmospheres as consequence of vaping with electronic cigarettes have been analyzed. Changes in the composition of volatile organic compounds (VOCs) in exhaled breath of non-smoking volunteers present in the vaping environments have also been studied. The exposure experiments involved non-vaping (n = 5) and vaping (n = 5) volunteers staying 12 h together in a room (54 m²) without external ventilation. The same experiment was repeated without vaping for comparison. Changes in the distributions of particles in the 8–400 nm range were observed, involving losses of nucleation-mode particles (below 20 nm) and increases of coagulation processes leading to larger size particles. In quantitative terms, vaping involved doubling the indoor concentrations of particles smaller than 10 μm, 5 μm, and 1 μm observed during no vaping. The increase of particle mass concentrations was probably produced from bulk ingredients of the e-liquid exhaled by the e-cigarette users. Black carbon concentrations in the indoor and outdoor air were similar in the presence and absence of electronic cigarette emissions. Changes in the qualitative composition of PAHs were observed when comparing vaping and non-vaping days. The nicotine concentrations were examined separately in the gas and in the particulate phases showing that most of the differences between both days were recorded in the former. The particulate phase should therefore be included in nicotine monitoring during vaping (and smoking). The concentration increases of nicotine and formaldehyde were small when compared with those described in other studies of indoor atmospheres or health regulatory thresholds. No significant changes were observed when comparing the concentrations of exhaled breath in vaping and no vaping days. Even the exhaled breath nicotine concentrations in both conditions were similar. As expected, toluene, xylenes, benzene, ethylbenzene, and naphthalene did not show increases in the vaping days since combustion was not involved.
Show more [+] Less [-]Influence of electronic cigarette vaping on the composition of indoor organic pollutants, particles, and exhaled breath of bystanders Full text
2019
Van Drooge, Barend L. | Marco, Esther | Pérez, Noemí | Grimalt, Joan O. | European Commission | Van Drooge, Barend L. [0000-0002-6434-3390] | Marco, Esther [0000-0002-9870-3470] | Grimalt, Joan O. [0000-0002-7391-5768]
The changes of particles and organic pollutants in indoor atmospheres as consequence of vaping with electronic cigarettes have been analyzed. Changes in the composition of volatile organic compounds (VOCs) in exhaled breath of non-smoking volunteers present in the vaping environments have also been studied. The exposure experiments involved non-vaping (n = 5) and vaping (n = 5) volunteers staying 12 h together in a room (54 m 2 ) without external ventilation. The same experiment was repeated without vaping for comparison. Changes in the distributions of particles in the 8–400 nm range were observed, involving losses of nucleation-mode particles (below 20 nm) and increases of coagulation processes leading to larger size particles. In quantitative terms, vaping involved doubling the indoor concentrations of particles smaller than 10 μm, 5 μm, and 1 μm observed during no vaping. The increase of particle mass concentrations was probably produced from bulk ingredients of the e-liquid exhaled by the e-cigarette users. Black carbon concentrations in the indoor and outdoor air were similar in the presence and absence of electronic cigarette emissions. Changes in the qualitative composition of PAHs were observed when comparing vaping and non-vaping days. The nicotine concentrations were examined separately in the gas and in the particulate phases showing that most of the differences between both days were recorded in the former. The particulate phase should therefore be included in nicotine monitoring during vaping (and smoking). The concentration increases of nicotine and formaldehyde were small when compared with those described in other studies of indoor atmospheres or health regulatory thresholds. No significant changes were observed when comparing the concentrations of exhaled breath in vaping and no vaping days. Even the exhaled breath nicotine concentrations in both conditions were similar. As expected, toluene, xylenes, benzene, ethylbenzene, and naphthalene did not show increases in the vaping days since combustion was not involved. © 2018, Springer-Verlag GmbH Germany, part of Springer Nature. | Funding Partial funding from EU projects HEALS (FP7-ENV-2013-603946), NEUROSOME (H2020-MSCA-ITN-2017 SEP-210411486), and EPPA S.A has been received. | Peer reviewed
Show more [+] Less [-]Bioaccumulation of Heavy Metals (Pb, Cd, Cr, Cu) in Fine Roots Under Three Species of Alders (Alnus spp.) Plantation at Different Soil Substrates Addition on the Reclaimed Combustion Wastes Landfill Full text
2019
Świątek, Bartłomiej | Woś, Bartłomiej | Gruba, Piotr | Pietrzykowski, Marcin
Bioaccumulation of Heavy Metals (Pb, Cd, Cr, Cu) in Fine Roots Under Three Species of Alders (Alnus spp.) Plantation at Different Soil Substrates Addition on the Reclaimed Combustion Wastes Landfill Full text
2019
Świątek, Bartłomiej | Woś, Bartłomiej | Gruba, Piotr | Pietrzykowski, Marcin
In the study, we have analysed the impact of lead (Pb), cadmium (Cd), chromium (Cr) and copper (Cu) on fine root biomass and the associated level of bioacumulation heavy metals in fine roots under alder plantings (Alnus incana, A. glutinosa and A. viridis) growing on technosols developed from combustion wastes and extremely poor quaternary sands excavated by sand mining. The control sites were located in natural habitats in the Bieszczady Mountains within the natural range of the occurrence of the investigated alder species. Results showed that the bioaccumulation index of heavy metals in the alder roots depended on technosol properties, in particular, pH and texture, and, to a lesser extent, on the total content of heavy metals in soil. Additionally, it was found that in some concentration ranges, Pb and Cr had a stimulating effect on the growth of fine roots.
Show more [+] Less [-]Bioaccumulation of Heavy Metals (Pb, Cd, Cr, Cu) in Fine Roots Under Three Species of Alders (Alnus spp.) Plantation at Different Soil Substrates Addition on the Reclaimed Combustion Wastes Landfill Full text
Bartłomiej Świątek | Bartłomiej Woś | Piotr Gruba | Marcin Pietrzykowski
In the study, we have analysed the impact of lead (Pb), cadmium (Cd), chromium (Cr) and copper (Cu) on fine root biomass and the associated level of bioacumulation heavy metals in fine roots under alder plantings (Alnus incana, A. glutinosa and A. viridis) growing on technosols developed from combustion wastes and extremely poor quaternary sands excavated by sand mining. The control sites were located in natural habitats in the Bieszczady Mountains within the natural range of the occurrence of the investigated alder species. Results showed that the bioaccumulation index of heavy metals in the alder roots depended on technosol properties, in particular, pH and texture, and, to a lesser extent, on the total content of heavy metals in soil. Additionally, it was found that in some concentration ranges, Pb and Cr had a stimulating effect on the growth of fine roots. | Bioaccumulation index, Mine soils, Heavy metals, Lead, Cadmium | 70 | 1-10 | 12
Show more [+] Less [-]How to preserve and handle fish liver samples to conserve RNA integrity Full text
2019
Vehniäinen, Eeva-Riikka | Ruusunen, Maiju | Vuorinen, Pekka J. | Keinänen, Marja | Oikari, Aimo O. J. | Kukkonen, Jussi V. K.
How to preserve and handle fish liver samples to conserve RNA integrity Full text
2019
Vehniäinen, Eeva-Riikka | Ruusunen, Maiju | Vuorinen, Pekka J. | Keinänen, Marja | Oikari, Aimo O. J. | Kukkonen, Jussi V. K.
As transcriptomic studies are becoming more and more common, it is important to ensure that the RNA used in the analyses is of good quality. The RNA integrity may be compromised by storage temperature or freeze-thaw cycles, but these have not been well studied in poikilothermic fishes. This work studied the effects of tissue storage time and temperature, and freeze-thaw cycles of tissue and extracted RNA on RNA integrity in brown trout (Salmo trutta L.) liver. The storage time and temperature had an effect on RNA integrity, but RNA suitable for quantitative reverse transcription PCR (RT-qPCR) (RIN > 7) was still obtained from samples preserved at − 20 °C for 6 months. Freeze-thaw cycles of tissue or RNA did not compromise the integrity of RNA. RNA degradation had an effect on RT-qPCR results, and the effect depended on gene. The RT-qPCR analysis of historical samples from a bleached kraft pulp mill effluent exposure in 1984 revealed no significant cyp1a induction. Recommendations are given for the preservation and handling procedures of samples designated for transcriptomic analyses.
Show more [+] Less [-]How to preserve and handle fish liver samples to conserve RNA integrity Full text
2019
Vehniäinen, Eeva-Riikka | Ruusunen, Maiju | Vuorinen, Pekka J. | Keinänen, Marja | Oikari, Aimo O.J. | Kukkonen, Jussi V.K. | University of Jyväskylä | http://orcid.org/0000-0001-6061-9014 | 4100110910