Aliphatic and polycyclic aromatic hydrocarbons (AHs and PAHs, respectively) were analyzed in the dissolved fraction (<0.7 μm) of surface water and in various particulate/planktonic size fractions (0.7–60, 60–200, 200–500 and 500–1000 μm) collected at the deep chlorophyll maximum, along a North-South transect in the Mediterranean Sea in spring 2019 (MERITE-HIPPOCAMPE campaign). Suspended particulate matter, biomass, total chlorophyll a, particulate organic carbon, C and N isotopic ratios, and lipid biomarkers were also determined to help characterizing the size-fractionated plankton and highlight the potential link with the content in AHs and PAHs in these size fractions. Ʃ28AH concentrations ranged 18–489 ng L−1 for water, 3.9–72 μg g−1 dry weight (dw) for the size fraction 0.7–60 μm, and 3.4–55 μg g−1 dw for the fractions 60–200, 200–500 and 500–1000 μm. AH molecular profiles revealed that they were mainly of biogenic origin. Ʃ14PAH concentrations were 0.9–16 ng L−1 for water, and Ʃ27PAH concentrations were 53–220 ng g−1 dw for the fraction 0.7–60 μm and 35–255 ng g−1 dw for the three higher fractions, phenanthrene being the most abundant compound in planktonic compartment. Two processes were evidenced concerning the PAH patterns, the bioreduction, i.e., the decrease in concentrations from the small size fractions (0.7–60 and 60–200 μm) to the higher ones (200–500 μm and 500–1000 μm), and the biodilution, i.e., the decrease in concentrations in plankton at higher suspended matter or biomass, especially for the 0.7–60 and 60–200-μm size fractions. We estimated the biological pump fluxes of Ʃ27PAHs below 100-m depth in the Western Mediterranean Sea at 15 ± 10 ng m−2 day−1, which is comparable to those previously reported in the South Pacific and Indian Ocean.

Plankton plays a prominent role in the bioaccumulation of mercury (Hg). The MERITE-HIPPOCAMPE campaign was carried out in spring 2019 along a north-south transect including coastal and offshore areas of the Mediterranean Sea. Sampling of sea water and plankton by pumping and nets was carried out in the chlorophyll maximum layer. Two size-fractions of phytoplankton (0.7–2.7 and 2.7–20 μm) and five of zooplankton (between 60 and >2000 μm) were separated, and their total mercury (THg) and monomethylmercury (MMHg) contents were measured. Bioconcentration of THg was significantly higher in the smallest phytoplankton size-fraction dominated by Synechococcus spp. The bioaccumulation and biomagnification of MMHg in zooplankton was influenced by size, food sources, biochemical composition and trophic level. MMHg was biomagnified in the plankton food web, while THg decreased toward higher trophic levels. Higher MMHg concentrations were measured in oligotrophic areas. Plankton communities in the Southern Mediterranean Sea had lower MMHg concentrations than those in the Northern Mediterranean Sea. These results highlighted the influence of environmental conditions and trophodynamics on the transfer of Hg in Mediterranean plankton food webs, with implications for higher trophic level consumers.

Plastics in rivers and lakes have direct local impact, and may also reach the world's oceans. Monitoring river plastic pollution is therefore key to quantify, understand and reduce plastics in all aquatic ecosystems. The lack of harmonization between ongoing monitoring efforts compromises the direct comparison and combination of available data. The United Nations Environment Programme (UNEP) launched guidelines on freshwater plastic monitoring, to provide a starting point for practitioners and scientists towards harmonized data collection, analysis, and reporting. We developed a five-step workflow to support to design effective plastic monitoring strategies. The workflow was applied to three rivers (Rhine, Mekong and Odaw) across relevant gradients, including geography, hydrology, and plastic pollution levels. We show that despite the simplicity of the selected methods and the limited duration of the data collection, our harmonized approach provides crucial insights in the state of plastic pollution in very different river basins globally.

The Millennium Coral Reef Mapping Project (MCRMP) aimed to map coral reefs worldwide at geomorphological thematic scales using Landsat satellite images at 30 m spatial resolution. The 5-level hierarchical classification scheme implemented by MCRMP identified at Level 2 ‘Atolls’ as one of the main types of coral reef complexes. In this review, the qualitative criteria used by MCRMP to identify atolls are presented. Then, we report on the global census of atolls, from which a consistent geomorphologic GIS database is provided. A total of 598 atolls are identified and mapped. The quantitative database provides surface areas for all geomorphologic units at Level 4 and 5 of the MCRMP classification scheme. It allows further work on atoll and coral reef classifications, regionally and globally, in order to identify geomorphic trends and outliers. It is also a convenient database to use in multivariate analyses with ancillary biodiversity, fishery, socio-economic or climate data.

Macroplastics are ubiquitous in aquaculture ecosystems. However, to date the potential role of plastics as a support for bacterial biofilm that can include potential human pathogenic bacteria (PHPB) and antibiotic-resistant bacteria (ARB) has been largely overlooked. In this study, we used a combination of metabarcoding and standard antibiotic susceptibility testing to study the pathobiome and resistome of macroplastics, fish guts and the environment in a marine aquaculture farm in Mauritius. Aquaculture macroplastics were found to be higher in PHPB, dominated by the Vibrionaceae family (0.34 % of the total community), compared with environmental samples. Moreover, isolates from aquaculture plastics showed higher significant multiple antibiotic resistance (MAR) compared to non-plastic samples of seawater, sediment and fish guts. These results suggest that plastics act as a reservoir and fomite of PHPB and ARB in aquaculture, potentially threatening the health of farmed fish and human consumers.

Multifactorial studies assessing the cumulative effects of natural and anthropogenic stressors on individual stress response are crucial to understand how organisms and populations cope with environmental change. We tested direct and indirect causal pathways through which environmental stressors affect the stress response of wild gilthead seabream in Mediterranean costal lagoons using an integrative PLS-PM approach. We integrated information on 10 environmental variables and 36 physiological variables into seven latent variables reflecting lagoons features and fish health. These variables concerned fish lipid reserves, somatic structure, inorganic contaminant loads, and individual trophic and stress response levels. This modelling approach allowed explaining 30 % of the variance within these 46 variables considered. More importantly, 54 % of fish stress response was explained by the dependent lagoon features, fish age, fish diet, fish reserve, fish structure and fish contaminant load latent variables included in our model. This integrative study sheds light on how individuals deal with contrasting environments and multiple ecological pressures.

International audience | The use of biochars (BCs) and activated carbons as a way of sequestering soil-bound pollutants such as chlordecone (CLD) is increasingly being studied. This study aims at assessing the impact of Sargassum BC/AC particle size and Sargassum BC amendment rate on CLD adsorption in Nitisol and in Andosol. Four different types of carbonaceous matrices were tested: Sargasso carbon activated by phosphoric acid (SargH3PO4), Sargasso carbon activated by steam (SargH2O), biochar of Sargasso (Ch Sarg700), and a commercial activated carbon (ORBO™). In a first experiment, CLD contaminated Andosol and Nitisol were amended with 2% of each carbonaceous matrix divided into four particles size classes (< 50 µm, 50–150 µm, 150–200 µm, and > 200 µm). In a second experiment, the contaminated soils were amended with the biochar of Sargasso at five application rates (0, 0.25, 0.5, 1, and 2% (w/w)). After a 4-month aging, environmental availability tests were carried out on the soils of both experiments. The results of the first experiment showed that the best reductions of CLD environmental availability were obtained in both soils with the biochar of Sargasso and the ORBO™. More specifically, in nitisol, particle size under 50 µm of biochar of Sargasso and AC ORBO™ showed a CLD environmental availability reduction up to 72 ± 2.6% and 79 ± 2.6%. In Andosol, there was no significant difference between the three particle sizes (< 50 µm, 50–150 µm, and 150–200 µm) of the biochar of Sargasso on the reduction of environmental availability (average reduction of 43 ± 2.5%). The results of the second experiment showed that an amendment rate increase improves the immobilization of CLD. When the amendment rate was increased from 0.25 to 2%, the environmental availability was reduced by 43% in Nitisol and 50% in Andosol.

International audience | 4-hydroxyphenylpyruvate dioxygenase (HPPD) is the molecular target of β-triketone herbicides in plants. This enzyme, involved in the tyrosine pathway, is also present in a wide range of living organisms, including microorganisms. Previous studies, focusing on a few strains and using high herbicide concentrations, showed that β-triketones are able to inhibit microbial HPPD. Here, we measured the effect of agronomical doses of β-triketone herbicides on soil bacterial strains. The HPPD activity of six bacterial strains was tested with 1× or 10× the recommended field dose of the herbicide sulcotrione. The selected strains were tested with 0.01× to 15× the recommended field dose of sulcotrione, mesotrione, and tembotrione. Molecular docking was also used to measure and model the binding mode of the three herbicides with the different bacterial HPPD. Our results show that responses to herbicides are strain-dependent with Pseudomonas fluorescens F113 HPPD activity not inhibited by any of the herbicide tested, when all three β-triketone herbicides inhibited HPPD in Bacillus cereus ATCC14579 and Shewanella oneidensis MR-1. These responses are also molecule-dependent with tembotrione harboring the strongest inhibitory effect. Molecular docking also reveals different binding potentials. This is the first time that the inhibitory effect of β-triketone herbicides is tested on environmental strains at agronomical doses, showing a potential effect of these molecules on the HPPD enzymatic activity of non-target microorganisms. The whole-cell assay developed in this study, coupled with molecular docking analysis, appears as an interesting way to have a first idea of the effect of herbicides on microbial communities, prior to setting up microcosm or even field experiments. This methodology could then largely be applied to other family of pesticides also targeting an enzyme present in microorganisms.

Structurally complex habitats, such as mangrove forests, allow for rich assemblages of species that benefit from the provided space, volume and substrate. Changes in habitat complexity can affect species abundance, diversity and resilience. In this study, we explored the effects of habitat complexity on food web networks in four developmental stages of mangrove forests with differing structural complexities: climax > degrading > colonizing > bare, by analyzing food web structure, stable isotopes and habitat complexity. We found that food webs became gradually more biodiverse (species richness: +119 %), complex (link density: +39 %), and robust (connectance: −35 %) in climax versus bare stages with increasing complexity of the mangrove forest (i.e., number of trees, leaf cover, and pneumatophore densities). This study shows that habitat complexity drives food web network structure in dynamic mangrove forests. We recommend restoration practitioners to use this food web network approach to quantify habitat restoration successes complementary to traditional biodiversity metrics.

Multirotor drones can be efficiently used to monitor macro-litter in coastal and riverine environments. Litter on beaches, dunes and riverbanks, along with floating litter on coastal and river waters, can be spotted and mapped from aerial drone images. Items detection and classification are prone to image resolution, which is expressed in terms of Ground Sampling Distance (GSD). The GSD is determined by drone flight altitude and camera properties. This paper investigates what is a suitable GSD value for litter survey. Drone flight altitude and camera setup should be chosen to obtain a GSD between 0.5 cm/px and 1.25 cm/px. Within this range, the lowest GSD allows litter categorization and classification, whereas the highest value should be adopted for a coarser litter census. In the vision of drawing up a global protocol for drone-based litter surveys, this work sets the ground for homogenizing data collection and litter assessments.