A presumed Vibrio parahaemolyticus isolate from Chesapeake Bay, Maryland, USA was previously reported to grow on phenanthrene, a polyaromatic hydrocarbon (PAH) found in crude oil. Following the Deepwater Horizon oil spill in the Gulf of Mexico, concerns were raised that PAH-degrading V. parahaemolyticus could increase in abundance, leading to elevated risks of disease derived from shellfish consumption. To assess this possibility, we examined responses to naphthalene and phenanthrene of 17 coastal Louisiana environmental V. parahaemolyticus isolates representing five distinct genotypes. Isolates were obtained immediately after the spill began and after oil had reached the Louisiana coast. None of the isolates grew on or oxidized either substrate and a naphthalene degradation product, 1-naphthol, substantially inhibited growth of some isolates. The use of PAH by V. parahaemolyticus is unusual, and an increase in human health risks due to stimulation of V. parahaemolyticus growth by oil-derived PAH under in situ conditions appears unlikely.

The Environmental Specimen Bank (es-BANK) for Global Monitoring at the Center for Marine Environmental Studies, Ehime University, Japan has more than four decades of practical experience in specimen banking. Over the years, es-BANK has archived specimens representing a wide range of environmental matrices, i.e. fishes, reptiles, birds, aquatic mammals, terrestrial mammals, human, soils, and sediments. The samples have been collected as part of the various monitoring programs conducted worldwide. The current review is a summary of selected studies conducted at the Center for Marine Environmental Studies, on temporal and spatial trends of legacy and emerging contaminants in the marine environment. One of the major conclusions drawn from the studies is that environmental problems are no more regional issues and, thus, environmental specimen banking should not be limited to national boundaries, but should have a global outlook.

The West Indian manatee Trichechus manatus is threatened with extinction in Brazil, and this study focused on nondestructive blood samples analyzed for metals, polychlorinated biphenyls (PCBs) and organochlorine pesticides (OCPs), as well as biochemical and hematological biomarkers. Studied manatees were kept at Projeto Peixe-Boi headquarters in Pernambuco State, and at two natural areas in estuaries where they are released to the wild. Manatees kept at the natural estuary in Paraiba State have blood concentrations of Al, Pb, Cd, Sn that are 11, 7, 8 and 23 times greater, respectively, than the concentrations found in blood of animals from the same species in Florida, USA. An inhibition of butyrylcholinesterase in manatees kept at the two reintroduction sites in Alagoas and Paraiba States indicated possible exposure of the animals to cholinesterase inhibitor insecticides. PCBs and OCPs were not detected. Results from this study will help delineate conservation efforts in the region.

An in-depth knowledge of solutes advection and turbulent diffusion is crucial to estimate dispersion area and retention time (tR) of pollutants within seagrass habitats. However, there is little knowledge on the influence of seagrass habitat fragmentation on such mechanisms. A set of dye tracer experiments and acoustic Doppler velocimeter measurements (ADV) were conducted. Solute transport conditions were compared in between fragmented (FM) vs homogeneous (HM) intertidal meadows, and in vertical gradients (canopy vs overlaying flow). Results showed the highest horizontal diffusion coefficient (Ky, c.a. 10⁻³m²s⁻¹) on FM and at the canopy-water column interface, whereas tR (2.6–5.6min) was not affected by fragmentation. It suggests that (1) FM are more vulnerable to pollution events in terms of dispersion area and (2) at low tide, advection rather than turbulent diffusion determines tR. Furthermore, Taylor’s theorem is revealed as a powerful tool to analyze vertical gradients on Ky within seagrass canopies.

The extreme 2010–2011 wet season resulted in highly elevated Burdekin River discharge into the Great Barrier Reef lagoon for a period of 200days, resulting in a large flood plume extending >50km offshore and >100km north during peak conditions. Export of suspended sediment was dominated by clay and fine silt fractions and most sediment initially settled within ∼10km of the river mouth. Biologically-mediated flocculation of these particles enhanced deposition in the initial low salinity zone. Fine silt and clay particles and nutrients remaining in suspension, were carried as far as 100km northward from the mouth, binding with planktonic and transparent exopolymer particulate matter to form large floc aggregates (muddy marine snow). These aggregates, due to their sticky nature, likely pose a risk to benthic organisms e.g. coral and seagrass through smothering, and also by contributing to increased turbidity during wind-induced resuspension events.

Our current view about the relationship between metals and bacteria in marine sediments might be biased because most studies only use ex situ approaches to quantify metals. The aim of the present research was to compare ex situ and in situ methods of metal measurement (DET and DGT – diffusive equilibration or diffusive gradients in thin-films) and relate the results with two commonly used microbiological variables (bacterial biomass and bacterial diversity as revealed by DGGE). No previous studies have used such in situ approaches in microbial ecology. For biomass and most of the investigated trace metals (Ag, Cd, Sn, Cr, Ni, Cu, Pb, and Al) no significant correlations were found. The exceptions were Fe, Mn, Co, and As which behave like micronutrients. For bacterial diversity, no relevant relationships were found. We conclude that in situ methods are more adapted tools for microbial ecologists but that ex situ approaches are still necessary.

Hydrodynamic functioning and water circulation of the semi-closed deep lagoon of Ahe atoll (Tuamotu Archipelago, French Polynesia) were investigated using 1year of field data and a 3D hydrodynamical model. Tidal amplitude averaged less than 30cm, but tide generated very strong currents (2ms⁻¹) in the pass, creating a jet-like circulation that partitioned the lagoon into three residual circulation cells. The pass entirely flushed excess water brought by waves-induced radiation stress. Circulation patterns were computed for climatological meteorological conditions and summarized with stream function and flushing time. Lagoon hydrodynamics and general overturning circulation was driven by wind. Renewal time was 250days, whereas the e-flushing time yielded a lagoon-wide 80-days average. Tide-driven flush through the pass and wind-driven overturning circulation designate Ahe as a wind-driven, tidally and weakly wave-flushed deep lagoon. The 3D model allows studying pearl oyster larvae dispersal in both realistic and climatological conditions for aquaculture applications.

Mercury and PCBs are used by non-governmental organizations and federal agencies to inform seafood safety recommendations. Pollution dynamics suggest recommendations on the national scale may be too large to be accurate. We tested softshell and hardshell blue crab, white and pink shrimp, oysters, clams, spot, and mullet from fishers in each of the three North Carolina fishery districts. We measured mercury using EPA method 7473 and PCBs using a commercially available ELISA kit. Over 97% of samples were below the Environmental Protection Agency levels of concern for both mercury and PCBs. Mercury and PCBs have different spatial dynamics, but both differ significantly by water body, suggesting that seafood safety recommendations should occur by water body instead of at the national scale. This finding supports previous research suggesting that differences in water chemistry, terrestrial influence, and flushing time in a particular water body control the contaminant load in locally resident species.

In Stone Town, Zanzibar, sewage treatment is minimal, with a biological oxygen demand reduction to 60% and no removal of bacteria or nutrients. Here, Stone Town’s sewage pollution was studied by measuring Enterococci and NH₄ ⁺ concentrations in seawater and δ¹⁵N of benthic organisms; samples were collected along the Stone Town shoreline and from offshore coral reefs. Public perceptions of sewage pollution were investigated via interviews. Enterococci from the Stone Town shoreline exceeded USEPA guidelines for recreational use. Benthic organisms from two of the four reefs were relatively enriched (δ¹⁵N>10‰), indicative of sewage derived N. δ¹⁵N values of organisms from Stone Town exceeded 16‰. A strong correlation was found between Enterococci and δ¹⁵N across sites, while step-wise regression indicated rainfall and tidal stage as important predictors for bacterial concentrations. These data provide an important impact assessment from which the efficacy of future policy and management change can be assessed.

Urbanization leads to the expansion of ephemeral seaweed species and the decline of important perennial, canopy-forming seaweed species. Understanding the mechanisms that lead to these changes is a current challenge. In the present study, laboratory assays and field transplantations were performed with two seaweed species: the perennial, canopy-forming seaweed Sargassum stenophyllum and the ephemeral seaweed Ulva lactuca. Photosynthetic efficiency was assessed using modulated chlorophyll fluorometry. Brief exposure to urban waters does not appear to be a major stressor to the photosynthetic efficiency of either species. However, after 26days of transplantation in urban waters, S. stenophyllum declined, whereas U. lactuca had enhanced photosynthetic efficiency. This difference reflects their divergent abilities to regulate the energy distribution at the PSII and shows that urban stressors alter these mechanisms. Our results provide evidence of the physiological causes for the decline of Sargassum species and the expansion of Ulva species in impacted urban areas.