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Uncoupled viral and bacterial distributions in coral reef waters of Tuamotu Archipelago (French Polynesia) Full text
2012
Bouvy, Marc | Combe, Marine | Bettarel, Yvan | Dupuy, Christine | Rochelle-Newall, Emma | Charpy, Loïc
Uncoupled viral and bacterial distributions in coral reef waters of Tuamotu Archipelago (French Polynesia) Full text
2012
Bouvy, Marc | Combe, Marine | Bettarel, Yvan | Dupuy, Christine | Rochelle-Newall, Emma | Charpy, Loïc
This study examined the distribution of virioplankton and bacterioplankton in two coral reef systems (Ahe and Takaroa atolls) in the Tuamotu Archipelago, in comparison with the surrounding oligotrophic ocean. Mean concentrations of 4.8×10⁵ and 6.2×10⁵cellsml⁻¹ for bacteria and 8.1×10⁶ and 4.3×10⁶VLP(virus-like particle) ml⁻¹ were recorded in Ahe and Takaroa lagoons, respectively. Chlorophyll-a concentrations and dissolved organic matter were higher in Ahe whereas ³H thymidine incorporation rates were higher in Takaroa. First data on lytic and lysogenic strategies of phages in coral reef environments were discussed in this paper. The fraction of visibly infected cells by viruses was negligible regardless of the lagoon station (mean=0.15%). However, the fraction of lysogenic cells ranged between 2.5% and 88.9%. Our results suggest that the distribution patterns of virioplankton are apparently not coupled to the spatial dynamics of the bacterioplankton communities.
Show more [+] Less [-]Uncoupled viral and bacterial distributions in coral reef waters of Tuamotu Archipelago (French Polynesia) Full text
2012
Bouvy, Marc | Combe, Marine | Bettarel, Yvan | Dupuy, Christine | Rochelle-Newall, Emma | Charpy, Loic | Ecosystèmes lagunaires : organisation biologique et fonctionnement (ECOLAG) ; Université Montpellier 2 - Sciences et Techniques (UM2)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS) | Institut des Sciences de l'Evolution de Montpellier (UMR ISEM) ; Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS) | Ecologie des systèmes marins côtiers (Ecosym) ; Université Montpellier 1 (UM1)-Université Montpellier 2 - Sciences et Techniques (UM2)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS) | LIttoral ENvironnement et Sociétés (LIENSs) ; Institut national des sciences de l'Univers (INSU - CNRS)-La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS) | Institut d'écologie et des sciences de l'environnement de Paris (iEES) ; Institut National de la Recherche Agronomique (INRA)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS) | Ecologie fonctionnelle et biogéochimie des sols et des agro-écosystèmes (UMR Eco&Sols) ; Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro) | Institut méditerranéen d'océanologie (MIO) ; Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) | European Development Fund; Service de la Perliculture; University of French Polynesia
International audience | This study examined the distribution of virioplankton and bacterioplankton in two coral reef systems (Ahe and Takaroa atolls) in the Tuamotu Archipelago, in comparison with the surrounding oligotrophic ocean. Mean concentrations of 4.8 x 10^5 and 6.2 x 10^5 cells ml-1 for bacteria and 8.1 x 10^6 and 4.3 x 10^6 VLP (virus-like particle) ml-1 were recorded in Ahe and Takaroa lagoons, respectively. Chlorophyll a concentrations and dissolved organic matter were higher in Ahe whereas 3H thymidine incorporation rates were higher in Takaroa. First data on lytic and lysogenic strategies of phages in coral reef environments were discussed in this paper. The fraction of visibly infected cells by viruses was negligible regardless of the lagoon station (mean = 0.15%). However, the fraction of lysogenic cells ranged between 2.5% and 88.9%. Our results suggest that the distribution patterns of virioplankton are apparently not coupled to the spatial dynamics of the bacterioplankton communities.
Show more [+] Less [-]Fish discards management: Pollution levels and best available removal techniques Full text
2012
Antelo, Luis T. | Lopes, Carla | Franco-Uría, Amaya | Alonso, Antonio A.
Fish discards management: Pollution levels and best available removal techniques Full text
2012
Antelo, Luis T. | Lopes, Carla | Franco-Uría, Amaya | Alonso, Antonio A.
Fish discards and by-catch issues are highly topical subjects that are permanently under a social focus. Two main approaches are being considered to address this discard problem: reducing the by-catch and increasing by-catch utilization. Interest in increased by-catch valorization may arise from a greater demand for fish products, such as the development of new markets for previously discarded species, the use of low-value specimens for aquaculture or the creation of value-added fish products for the food, pharmaceutical or cosmetic industries. However, contaminants present in fish discards may be transferred to their valorized products, leading to possible long-term bioaccumulation and subsequent adverse health effects. In this valorization framework, the aim is to promote responsible and sustainable management of marine resources. The pollutant levels in catches from European fisheries and the best available decontamination techniques for marine valorized discards/by-products are compiled and analyzed in this work.
Show more [+] Less [-]Fish discards management: pollution levels and best available removal techniques Full text
2012
Antelo, L. T. | Lopes, Carla | Franco-Uría, A. | Alonso, Antonio A.
14 páginas, 3 tablas | Fish discards and by-catch issues are highly topical subjects that are permanently under a social focus. Two main approaches are being considered to address this discard problem: reducing the by-catch and increasing by-catch utilization. Interest in increased by-catch valorization may arise from a greater demand for fish products, such as the development of new markets for previously discarded species, the use of low-value specimens for aquaculture or the creation of value-added fish products for the food, pharmaceutical or cosmetic industries. However, contaminants present in fish discards may be transferred to their valorized products, leading to possible long-term bioaccumulation and subsequent adverse health effects. In this valorization framework, the aim is to promote responsible and sustainable management of marine resources. The pollutant levels in catches from European fisheries and the best available decontamination techniques for marine valorized discards/by-products are compiled and analyzed in this work. | The authors acknowledge the financial support received from the LIFE + Program of the European Union (FAROS Project – LIFE08 ENV/E/000119). | Peer reviewed
Show more [+] Less [-]Trace elements in two marine fish species during estuarine residency: Non-essential versus essential Full text
2012
Mieiro, C.L. | Coelho, J.P. | Pacheco, M. | Duarte, A.C. | Pereira, M.E.
Trace elements in two marine fish species during estuarine residency: Non-essential versus essential Full text
2012
Mieiro, C.L. | Coelho, J.P. | Pacheco, M. | Duarte, A.C. | Pereira, M.E.
Trace element levels in fish are of particular interest, owing the potential risk to human health. In accordance, juveniles of Dicentrarchus labrax and of Liza aurata were sampled and arsenic, cadmium, chromium, selenium and zinc were determined in the muscle. The levels of trace elements in muscle demonstrated to be similar for both species and sites, with the exception of selenium levels at reference, which seemed to be higher in D. labrax. Moreover, apart from arsenic levels in muscle, all elements were in conformity with the existent regulatory guidelines for fish consumption. The dietary intake of each element was also calculated, with arsenic and selenium showing intakes above the recommended dietary allowances. Nevertheless, no arsenic speciation was carried out and thus no accurate risk evaluation could be established. Additionally, selenium levels never exceeded the dietary allowances more than five times, which are considered safe.
Show more [+] Less [-]Trace elements in two marine fish species during estuarine residency: Non-essential versus essential Full text
1000
Mieiro, C. L. | Coelho, J. P. | Pacheco, M. | Duarte, A. C. | Pereira, M. E.
Trace element levels in fish are of particular interest, owing the potential risk to human health. In accordance, juveniles of Dicentrarchus labrax and of Liza aurata were sampled and arsenic, cadmium, chromium, selenium and zinc were determined in the muscle. The levels of trace elements in muscle demonstrated to be similar for both species and sites, with the exception of selenium levels at reference, which seemed to be higher in D. labrax. Moreover, apart from arsenic levels in muscle, all elements were in conformity with the existent regulatory guidelines for fish consumption. The dietary intake of each element was also calculated, with arsenic and selenium showing intakes above the recommended dietary allowances. Nevertheless, no arsenic speciation was carried out and thus no accurate risk evaluation could be established. Additionally, selenium levels never exceeded the dietary allowances more than five times, which are considered safe.
Show more [+] Less [-]Likely effects of construction of Scroby Sands offshore wind farm on a mixed population of harbour Phoca vitulina and grey Halichoerus grypus seals Full text
2012
Skeate, Eleanor R. | Perrow, Martin R. | Gilroy, James J.
Scroby Sands offshore wind farm was built close to a haul-out and breeding site for harbour seal, a species of conservation concern. An aerial survey programme conducted during a five-year period spanning wind farm construction, revealed a significant post-construction decline in haul-out counts. Multivariate model selection suggested that the decline was not related to the environmental factors considered, nor did it mirror wider population trends. Although cause and effect could not be unequivocally established, the theoretical basis of hearing in pinnipeds and previous studies suggested that extreme noise (to 257dB re 1μ Paₚₚ @ 1m) generated by pile-driving of turbine bases led to displacement of seals. A lack of full recovery of harbour seal during the study was also linked to their sensitivity to vessel activity and/or rapid colonisation of competing grey seal. Any impact of offshore wind farm development upon pinnipeds would be much reduced without pile-driving.
Show more [+] Less [-]Northern fulmars as biological monitors of trends of plastic pollution in the eastern North Pacific Full text
2012
Avery-Gomm, Stephanie | O’Hara, Patrick D. | Kleine, Lydia | Bowes, Victoria | Wilson, Laurie K. | Barry, Karen L.
Marine plastic debris is a global issue, which highlights the need for internationally standardized methods of monitoring plastic pollution. The stomach contents of beached northern fulmar (Fulmarus glacialis) have proven a cost-effective biomonitor in Europe. However, recent information on northern fulmar plastic ingestion is lacking in the North Pacific. We quantified the stomach contents of 67 fulmars from beaches in the eastern North Pacific in 2009–2010 and found that 92.5% of fulmars had ingested an average of 36.8 pieces, or 0.385g of plastic. Plastic ingestion in these fulmars is among the highest recorded globally. Compared to earlier studies in the North Pacific, our findings indicate an increase in plastic ingestion over the past 40years. This study substantiates the use of northern fulmar as biomonitors of plastic pollution in the North Pacific and suggests that the high levels of plastic pollution in this region warrant further monitoring.
Show more [+] Less [-]Macrobenthic community for assessment of estuarine health in tropical areas (Northeast, Brazil): Review of macrofauna classification in ecological groups and application of AZTI Marine Biotic Index Full text
2012
Valença, Ana Paula M.C. | Santos, Paulo J.P.
The aim of the present study was to investigate the ecological quality of tropical estuaries on the northeastern coast of Brazil using the AMBI. Macrofauna classification based on ecological groups was reviewed using the Indicator Value (IndVal) coefficient. The results indicate that the ecosystems exhibit some level of disturbance. Most sites are situated between slightly-moderately disturbed boundaries due to the higher proportion of Nematoda (assigned here as Ecological Group I) and of Oligochaeta and Tubificidae (both classified as Ecological Group V). The AMBI proved efficient in evaluating environmental status, although the applicability of this index requires adjustments regarding some species in ecological groups. The present study also highlights the merits of the IndVal method for examining the assignments of species/taxa to an ecological group and demonstrates the validity of this coefficient is an assessment tool. Moreover, the complementary use of different methods is recommended for the assessment of ecosystem quality.
Show more [+] Less [-]Marine biosecurity: The importance of awareness, support and cooperation in managing a successful incursion response Full text
2012
Piola, Richard F. | McDonald, Justin I.
Shipping is almost certainly the most prevalent human-mediated transport vector for non-indigenous species (NIS) within the marine environment. The Royal Australian Navy (RAN) has long acknowledged the importance of sound environmental management and in recent years has taken a proactive approach to addressing risks associated with marine biosecurity. primarily as a result of biofouling on Navy vessel returning from overseas operations. This paper describes two case studies that highlight the effectiveness of the RAN marine biosecurity management framework in identifying an unwanted marine species on Navy vessels, and the successful biosecurity management program that ensued. In particular, the early detection and identification of a suspect NIS, the quick response to the discovery and the collaborative approach adopted between the RAN and the Government regulatory agency (Western Australian Department of Fisheries) charged with coordinating the incursion response serves as a model for how future incursion responses should be reported and managed.
Show more [+] Less [-]Ascidian introductions through the Suez Canal: The case study of an Indo-Pacific species Full text
2012
Rius, Marc | Shenkar, Noa
Although marine biological invasions via the Suez Canal have been extensively documented, little is known about the introduction of non-indigenous ascidians (Chordata, Ascidiacea), a group containing particularly aggressive invasive species. Here, we used a multidisciplinary approach to study the introduction of the ascidian Herdmania momus into the Mediterranean Sea. We reviewed its taxonomy and global distribution, and analyzed how genetic variation is partitioned between sides of the Suez Canal. The taxonomic revision showed that H. momus currently has a wide Indo-Pacific distribution. Genetic data indicated two well-differentiated colonization histories across the eastern Mediterranean. Our findings suggest that the range expansion of H. momus has been greatly facilitated by the combined effect of human-mediated transport and the species’ ability to adapt to different environments. The integrative approach presented here is critical to attain a holistic understanding of marine biological invasions, especially when studying groups with a poorly resolved taxonomy.
Show more [+] Less [-]Survival and movements of Magellanic penguins rehabilitated from oil fouling along the coast of South America, 2000–2010 Full text
2012
Ruoppolo, Valeria | Vanstreels, Ralph Eric Thijl | Woehler, E. J. (Eric J.) | Heredia, Sergio Andres Rodríguez | Adornes, Andréa Corrado | Silva-Filho, Rodolfo Pinho da | Matus, Ricardo | Poleschi, Carla | Griot, Karen | Kolesnikovas, Cristiane K Miyaji | Serafini, Patrícia
Oil pollution is a significant conservation concern. We examined data from six institutions along the coast of South America: Emergency Relief Team of the International Fund for Animal Welfare, Fundación Mundo Marino, Centro de Recuperação de Animais Marinhos, Natura Patagonia, Associação R3 Animal, and Mar del Plata Aquarium and data from resightings in Argentina, Brazil, Chile and Falkland/Malvinas Islands. From 2000 to 2010, 2183 oiled Magellanic penguins were rehabilitated as part of the routine activities of these institutions or during emergency responses to eight oil spills in which they were involved; all rehabilitated penguins were flipper banded and released. Since their release, 41 penguins were resighted until 31 December 2011. The results demonstrate that, when combined with other prevention strategies, the rehabilitation of Magellanic penguins is a strategy that contributes to the mitigation of adverse effects of oil spills and chronic pollution to the species.
Show more [+] Less [-]Assessing sound exposure from shipping in coastal waters using a single hydrophone and Automatic Identification System (AIS) data Full text
2012
Merchant, Nathan D. | Witt, Matthew J. | Blondel, Philippe | Godley, Brendan J. | Smith, George H.
Underwater noise from shipping is a growing presence throughout the world’s oceans, and may be subjecting marine fauna to chronic noise exposure with potentially severe long-term consequences. The coincidence of dense shipping activity and sensitive marine ecosystems in coastal environments is of particular concern, and noise assessment methodologies which describe the high temporal variability of sound exposure in these areas are needed. We present a method of characterising sound exposure from shipping using continuous passive acoustic monitoring combined with Automatic Identification System (AIS) shipping data. The method is applied to data recorded in Falmouth Bay, UK. Absolute and relative levels of intermittent ship noise contributions to the 24-h sound exposure level are determined using an adaptive threshold, and the spatial distribution of potential ship sources is then analysed using AIS data. This technique can be used to prioritise shipping noise mitigation strategies in coastal marine environments.
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