The freshwater–saltwater-transition-zone was analysed using two different sampling protocols and assessment methodologies, developed for freshwater and estuaries, to compare their agreement level in terms of community composition and quality assessments. The use of different protocols resulted in significant differences in macroinvertebrate communities, in index scores and initially in quality classes. After modifications in the sensitivity scores of the IBMWP and AMBI indices (average scores or the use of a score of the other index when both were present), the differences were largely reduced and quality classes became coincident for the assessments provided by IPtIs and BAT tools. Such harmonisation of quality assessments for adjacent water categories (e.g., large rivers vs. transitional waters), exemplified here as an harmonisation in one of the metrics comprised in the assessment tools, is essential as it has direct implications on the expansion and accomplishment of River Basin Management Plans committed by the Water Framework Directive.

Identifying the baseline or natural state of an ecosystem is a critical step in effective conservation and restoration. Like most marine ecosystems, coral reefs are being degraded by human activities: corals and fish have declined in abundance and seaweeds, or macroalgae, have become more prevalent. The challenge for resource managers is to reverse these trends, but by how much? Based on surveys of Caribbean reefs in the 1970s, some reef scientists believe that the average cover of seaweed was very low in the natural state: perhaps less than 3%. On the other hand, evidence from remote Pacific reefs, ecological theory, and impacts of over-harvesting in other systems all suggest that, historically, macroalgal biomass may have been higher than assumed. Uncertainties about the natural state of coral reefs illustrate the difficulty of determining the baseline condition of even well studied systems.

In order to analyze the spatial distribution patterns, pollution sources and ecological risks of heavy metals (As, Cd, Cr, Cu, Mn, Ni, Pb and Zn), 30 sediment samples were taken from in the Yangtze River Estuary (YRE). The results indicated that the contamination ranking of heavy metals was As>Cr>Cd>Ni>Mn>Pb>Zn>Cu. In the various areas, the pollution magnitude decreased as follows: adjacent sea>river mouth>inner-region. Compared to data published for other regions, the YRE data indicated that the sediment was not severely contaminated by heavy metals. In the YRE, natural and anthropogenic inputs dominated the distribution patterns of the heavy metals. Beyond that, the hydrodynamic conditions, such as the Taiwan warm current, coastal current and Yangtze diluted water, also caused distribution variations in the study areas.

The majority of plastic debris found in the marine environment has land based sources and rivers are considered an important medium for transfer of this debris. Here we report on the quantity and composition of floating plastic debris collected from surface waters of the Tamar Estuary. This represents the first study of riverine transport of floating plastic debris into European waters during different tidal regimes. Plastics were found in a variety of forms and sizes and microplastics (<5mm) comprised 82% of the debris. The most abundant types of plastic were Polyethylene (40%), Polystyrene (25%) and Polypropylene (19%). There was a significant difference in size frequency distribution between the spring and neap tides with more fragments of larger size observed during spring tides. While it is clear that debris has accumulated on shorelines within the estuary, during our study this river did not identify as a net source or sink.

Four popular, recreational beaches in Miami, FL are Hobie Beach, Virginia Key Beach, Crandon Park Beach, and Bill Baggs Cape Florida State Park. While all of the beaches are within a few miles of each other in Biscayne Bay, they have greatly differing water qualities, as determined by the testing for fecal indicator bacteria performed by the Florida Department of Health. Using the geodesic theory of transport barriers, we identify Lagrangian Coherent Structures (LCSs) in each area. We show how these material curves, which shape circulation and mixing patterns, can be used to explain the incongruous states of the water at beaches that should be comparable. The LCSs are computed using a hydrodynamic model and verified through field experimentation at each beach.

To assess risks of chemically-dispersed oil to marine organisms, oil concentrations in the water were simulated using a hypothetical spill accident in Tokyo Bay. Simulated oil concentrations were then compared with the short-term no-observed effect concentration (NOEC), 0.01mg/L, obtained through toxicity tests using marine diatoms, amphipod and fish. Area of oil concentrations higher than the NOEC were compared with respect to use and non-use of dispersant. Results of the simulation show relatively faster dispersion near the mouth of the bay compared to its inner sections which is basically related to its stronger water currents. Interestingly, in the inner bay, a large area of chemically-dispersed oil has concentrations higher than the NOEC. It seems emulsifying oil by dispersant increases oil concentrations, which could lead to higher toxicity to aquatic organisms. When stronger winds occur, however, the difference in toxic areas between use and non-use of dispersant is quite small.

The effect of different concentrations of NaCl, 0, 100, 200, 300 and 400mM, on the anatomical features and physiology of Myoporum bontioides was investigated. The photosynthetic rates (Pn) were significantly reduced by salt stress, with the lowest values at 400mM NaCl. The content of malondialdehyde (MDA), proline and soluble sugar, as well as the activities of peroxidase (POD) and catalase (CAT) increased at the beginning, but became similar to the control as the experiment proceeded. The NaCl effect on superoxide dismutase (SOD) was different from the other parameters, with a significant reduction at 400mM NaCl at Day 7. Salt glands were found in both upper and lower epidermis, and the ratios of the thickness of palisade to spongy mesophyll tissues increased with NaCl concentrations. The medullary ray was clearly damaged by NaCl at levels of 200 and 300mM. These results demonstrated that M. bontioides could adapt to a relatively low salinity, and was not a halophilous species.

Ocean-color remote sensing has been used as a tool to detect phytoplankton size classes (PSCs). In this study, a three-component model of PSC was reparameterized using seven years of pigment measurements acquired in the South China Sea (SCS). The model was then used to infer PSC in a cyclonic eddy which was observed west of Luzon Island from SeaWiFS chlorophyll-a (chla) and sea-surface height anomaly (SSHA) products. Enhanced productivity and a shift in the PSC were observed, which were likely due to upwelling of nutrient-rich water into the euphotic zone. The supply of nutrients promoted the growth of larger cells (micro- and nanoplankton), and the PSC shifted to greater sizes. However, the picoplankton were still important and contributed ∼48% to total chla concentration. In addition, PSC time series revealed a lag period of about three weeks between maximum eddy intensity and maximum chlorophyll, which may have been related to phytoplankton growth rate and duration of eddy intensity.

The vertical distribution of plutonium 241Pu in marine sediments can assist in determining the deposition history and sedimentation process of analyzed regions. In addition, 241Pu/239+240Pu activity ratio could be used as a sensitive fingerprint for radioactive source identification. The present preliminary studies on vertical distribution of 241Pu in sediments from four regions of the southern Baltic Sea are presented. The distribution of 241Pu was not uniform and depended on sediment geomorphology and depth as well as location. The highest concentrations of plutonium were found in the surface layers of all analyzed sediments and originated from the Chernobyl accident.

A flexible 2D/3D oil spill modeling system addressing the distinct nature of the surface and water column fluids, major oil weathering and improved retention/reposition processes in coastal zones is presented. The system integrates hydrodynamic, transport and oil weathering modules, which can be combined to offer different-complexity descriptions as required by applications across the river-to-ocean continuum. Features include accounting for different composition and reology in the surface and water column mixtures, as well as spreading, evaporation, water-in-oil emulsification, shoreline retention, dispersion and dissolution. The use of unstructured grids provides flexibility and efficiency in handling spills in complex geometries and across scales. The use of high-order Eulerian–Lagrangian methods allows for computational efficiency and for handling key processes in ways consistent with their distinct mathematical nature and time scales. The modeling system is tested through a suite of synthetic, laboratory and realistic-domain benchmarks, which demonstrate robust handling of key processes and of 2D/3D couplings. The application of the modeling system to a spill scenario at the entrance of a port in a coastal lagoon illustrates the power of the approach to represent spills that occur in coastal regions with complex boundaries and bathymetry.