Currently, densities of Enterococcus in marine bathing beach samples are performed using conventional methods which require 24h to obtain results. Real-time PCR methods are available which can measure results in as little as 3h. The purpose of this study was to evaluate a more rapid test method for the determination of bacterial contamination in marine bathing beaches to better protect human health. The geometric mean of Enterococcus densities using Enterolert® defined substrate testing and membrane filtration ranged from 5.2 to 150MPN or CFU/100mL and corresponding qPCR results ranged from 6.6 to 1785CCE/100mL. The regression analysis of these results showed a positive correlation between qPCR and conventional tests with an overall correlation (r) of 0.71. qPCR was found to provide accurate and sensitive estimate of Enterococcus densities and has the potential to be used as a rapid test method for the quantification of Enterococcus in marine waters.

Richards Bay Harbour is South Africa’s premier bulk cargo port. It was constructed in the Mhlathuze estuary in 1976 and over the past 34years has become South Africa’s most modern and largest cargo handling port. Although no official monitoring programme is in progress various studies by different groups have provided relevant data with respect to changing metal levels in brown mussel tissue (Perna perna) over the last 34years. Eleven elements were analysed in brown mussels from the main channel in Richards Bay Harbour using ICP-MS. The results indicate that the metal concentrations in the mussel tissue remained relatively constant between 1974 and 2005. The mean metal concentrations increased significantly in 2005 possibly due to the construction of the new coal terminal and associated dredging activities. Mean metal concentrations in the 2008 sampling event were also elevated due to increased run off during an above average rainy season.

Analysis and interpretation of monitoring data for the seabed bathymetry local to offshore windfarm foundations has shown how the scour develops in time and highlighted variations between sites with different seabed sediment characteristics, i.e. sands and clays. Results from European offshore windfarms have generated a unique dataset for comparison with previously published data. Where surficial sediment is underlain by a marine clay the scour (to date) has been limited, whilst those with unconstrained depths of sandy sediments show scour as deep as 1.38 times the monopile diameter. Scour protection has been installed at some sites for structural stability of the foundation or for cable protection. The flow interaction with the protection causes edge scour or secondary scour in the seabed around the protection. In some cases this scour is deeper than the unprotected case. The analysis has resulted in an improved evidence base for scour in the marine environment.

This ten-year study examined the morphological, physiological, and ecological characteristics of coral growth anomalies on Acropora cytherea on Amuro Island, Okinawa, Japan. The objectives of the study were to assess whether the growth anomalies, identified as diffuse disruptions on the skeleton: (i) were more prevalent on large colonies than on small colonies, (ii) were more common near the center of the colonies than peripherally, (iii) affected colony growth and mortality, and (iv) affected coral-colony fecundity and photosynthetic capacity. We hypothesized that the growth anomalies were signs of the onset of aging. The growth anomalies were more prevalent on colonies >2m diameter, and were concentrated near the central (older) portions of the colonies. The growth anomalies were also associated with reduced productivity and dysfunctional gametogenesis. Still, the growth anomalies did not appear to affect colony survival. The contact experiments showed that the growth anomalies were not contagious, and were most likely a sign of aging that was exacerbated by thermal stress.

In Tolo Harbour, Hong Kong, where hypoxia occurs periodically, a large amount of benthic epifauna was found to be absent in the summer but become abundant again in the winter. This observation may indicate that some species are sensitive in detecting low dissolved oxygen (DO) levels and are able to escape from the harbour to more oxygenated, open waters when conditions deteriorate and return when DO levels are improved. Analysis of biological traits of these animals showed that 58% of the categories showed significant differences between the community structure in summer and winter. The significant biological traits of the few species, which remained in the harbour under the summer’s hypoxic conditions suggested adaptation rather than opportunism to the low DO levels. Our data also showed that trawling can increase DO at the bottom and may benefit the less sensitive species that remained in the habitat during the summer.

One source of anthropogenic noise in the oceans which has attracted much concern is naval sonar. As a result of possible impacts of such sonar, several environmental NGOs have pursued legal cases in the United States criticizing environmental assessments conducted prior to exercises and proposed mitigation measures. Cases have been brought using the US National Environmental Protection Act, Marine Mammal Protection Act, Endangered Species Act, Coastal Zone Management Act and other statutes. This paper reviews the chronology and results of these various cases. During the G.W. Bush presidential administration, the legal battle went to the US Supreme Court in the case Winter vs. Natural Resources Defense Council. This case however, did not address the potential impacts of sonar on cetaceans or the effectiveness of mitigation measures. During the Obama administration, mitigation measures for naval exercises have been revised, and working groups planned, in an attempt to resolve conflict between parties.

This study reports the annual amount of heavy metals discharged by industrial activity into the estuary of the Ría of Huelva (SW Spain). The findings showed that the discharged metals found in highest amounts were Fe (11ty⁻¹), Zn (3.4ty⁻¹) and Mo (0.88ty⁻¹). There were other metals with high pollutant charge, such as Ti (232kgy⁻¹), As (228kgy⁻¹), Ni (195kgy⁻¹), Pb (100kgy⁻¹), Cr (39kgy⁻¹) and Cd (33kgy⁻¹). These results were compared with pollutants transported via the Tinto and Odiel rivers from abandoned mining activities in the Iberian Pyrite Belt (IPB), and it was deduced that the amounts spilled exclusively by industries were less than 1% in relation to the total discharge. Hence, the treatment of residues from the IPB should be the priority goal to improve water quality in the estuary.

The change in community diversity and structure of the indigenous, dominant, polycyclic aromatic hydrocarbon (PAH)-degrading bacterial genera, Sphingomonas and Mycobacterium, due to contamination in the environment is not very well known. A combination of PCR-DGGE with specific primers and a cultivation-dependent microbiological method was used to detect different populations of Sphingomonas and Mycobacterium in mangrove sediments. The structure of the entire bacterial community (including Sphingomonas) did not show a shift due to environmental contamination, whereas the diversity of Mycobacterium populations in mangrove sediments with higher PAH contamination increased from exposure between Day 0 and Day 30. The isolated Mycobacterium strains migrated to the same position as the major bands of the bacterial communities in Mycobacterium-specific DGGE. A dioxygenase gene system, nidA, which is commonly found in PAH-degrading Mycobacterium strains, was also detected in the more highly contaminated sediment slurries. The present study revealed that Mycobacterium species were the dominant PAH-degraders and played an important role in degrading PAHs in contaminated mangrove sediments.

In the present study, phenanthrene was chosen as the probe compound for determining the sorption of PAHs in sediments from Yangtze estuary and nearby coastal area, China. Sorption isotherms were fitted well by the Freundlich and dual models, respectively. Selected sediments were further sequentially separated to remove the carbonate and organic carbon (OC). Calculated OC sorption capacity values based on both H₂O₂ oxidization and 375°C combustion methods were similar and comparable to the Kₒc values estimated by the empirical linear sorption equations. Both sorption models and sorption data using sequentially separated samples achieve the similar conclusions: (1) the partition behavior dominated by OC in sediments with fₒc>0.01; (2) for sediments with 0.001<fₒc<0.01, OC dominated sorption at relatively high aqueous concentration; whereas mineral phase adsorption dominated sorption at lower concentration especially when Cw/Sw was in the range of 0.0001–0.001 in natural aqueous system.

Plastic marine debris is a pervasive type of pollution. River basins and estuaries are a source of plastics pollution for coastal waters and oceans. Estuarine fauna is therefore exposed to chronic plastic pollution. Three important catfish species [Cathorops spixii (N=60), Cathorops agassizii (N=60) and Sciades herzbergii (N=62)] from South Western Atlantic estuaries were investigated in a tropical estuary of the Brazilian Northeast in relation to their accidental ingestion of plastic marine debris. Individuals from all three species had ingested plastics. In C. spixii and C. agassizii, 18% and 33% of individuals had plastic debris in their stomachs, respectively. S. herzbergii showed 18% of individuals were contaminated. All ontogenetic phases (juveniles, sub-adults and adults) were contaminated. Nylon fragments from cables used in fishery activities (subsistence, artisanal and commercial) played a major role in this contamination. These catfish spend their entire life cycles within the estuary and are an important feeding resource for larger, economically important, species. It is not yet possible to quantify the scale and depth of the consequences of this type of pollution. However, plastics are well known threat to living resources in this and other estuaries. Conservation actions will need to from now onto take plastics pollution into consideration.