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EIN3/EIL (Ethylene Insensitive3 / Ethylene Insensitive3 Like) Protein Family in Phaseolus vulgaris: Identification, Evolution and Expression Analysis within the Genome
2023
Simay Ezgi Akbulut | Zehra Şafak | Aybüke Okay | Kimia Amirina | Ilker Büyük
Ethylene insensitive-3 (EIN3) / Ethylene insensitive-3-like (EIL) protein family is a small family of transcription factors specific to plants that play role in plant growth and development under various environmental conditions. In this study, various bioinformatics approaches were used to make an in-depth identification of the EIN3/EIL family at both the gene and protein levels. So, 11 Pvul-EIL genes were identified and their approximate locations were determined. Various biochemical and physicochemical properties of EIL proteins in Phaseolus vulgaris have been described. It was determined that Pvul-EIL proteins had a length of 447-651 amino acids and a molecular weight of 51.08-70.68 kDa. All duplications occurring in the Pvul-EIL genome were segmental type. It was observed that conserved motif, gene structure and phylogeny analyses all yielded similar results. For instance, it has been understood that genes with same motif type and number have similar gene structures and were located under the same branch in the phylogenetic tree. Pvul-EIL protein homology modeling showed that DNA binding properties and protein structure were similar to Arabidopsis EIN3. According to cis-element analysis, Pvul-EIL genes are engaged in a wide range of functions, including tissue-specific, stress, and hormone-sensitive expression. Additionally, RNAseq data was used to perform a comparative expression analysis of EIL genes. Various Pvul-EIL gene expression levels were detected under salt and drought stress. This is the first study to check the gene expression levels in P. vulgaris using in-silico detection and characterization of EIL genes. Therefore, obtained results can form the basis for future studies.
Show more [+] Less [-]Effect of Full and Limited Irrigation Treatments on Seed Quality of Some Common Bean Cultivars (Phaseolus vulgaris L.)
2018
Sevgi Çalışkan | Ramazan İlhan Aytekin | Ayten Kübra Yağız | Caner Yavuz
The aim of the study is to determine the seed quality of different dry bean genotypes, grown under full and limited irrigation conditions. The study was conducted at Nigde Omer Halisdemir University laboratories. Eight different dry bean cultivars (Yunus 90, Cihan, Goynuk 98, Batalla, Alberto, Arslan, Zirve, Noyanbey 98) were used in the study. The study was established with 3 replications according to randomized split-plot design. Quality characters like dry and wet seed weight, water uptake capacity, water uptake index, dry and wet volume, swelling capacity and swelling index, cooking time and protein content were determined. In conclusion, statistically significant differences among applications and cultivars were observed in terms of the all parameters examined. The grains obtained from the limited irrigation plots, had lower values in terms of all evaluated properties. Differences between dry and wet weight, water uptake capacity and index, dry and wet volume, cooking time and protein content between cultivars were statistically significant. In the study, correlation between cooking time and grain size was determined, and it was concluded that enlarging in grains size increases the cooking time. In addition, it was concluded that limited irrigation in the reproductive period had a negative effect on seed quality of different dry bean cultivars and it should not be lowered below 50% of the water capacity in the soil during this period.
Show more [+] Less [-]Düşük Doz Gama (60Co) Işını Uygulamalarının Kısıtlı Sulama Koşullarında Taze Fasulyenin Erken Fide Gelişimine Etkilerinin Belirlenmesi
2023
Muhsin Yıldız | Çeknas Erdinç | Aytekin Ekincialp
Kuraklık stresi, pek çok kültür bitkisinde olduğu gibi taze fasulye üretimini de sınırlayan başlıca faktörlerden biridir. Son zamanlarda düşük dozda gama ışını uygulamalarının bitki gelişiminin kritik aşamalarında kuraklığın oluşturduğu olumsuz etkinin elemine edilmesinde yardımcı olduğu bazı araştırmacılar tarafından bildirilmiştir. Fakat bu konuda yapılan çalışmalar oldukça sınırlıdır. Bu çalışmada farklı gama ışın dozları (0, 25, 50 ve 100 Gy) uygulanan Gina ve Romano taze fasulye çeşitlerinde kısıtlı sulamanın etkilerinin belirlenmesi amaçlanmıştır. Fideler iklim odası koşullarında 23 ± 2°C sıcaklık ve 16:8 ışık:karanlık periyodunda tam sulama [%100 (I1)] ve kısıtlı sulama [%50 (I2)] olacak şekilde iki farklı sulama seviyesinde yetiştirilmişlerdir. Çalışma sonunda gama ışını dozları ile kısıtlı sulamanın sürgün ve kök boyu, yaprak sayısı, sürgün ve kök yaş-kuru ağırlıkları, kök-sürgün oranı gibi fide gelişim parametrelerinin yanı sıra yaprak oransal su içeriği, fotosentetik pigment içeriği, lipid peroksidasyonu ve sürgün besin elementi içeriklerine etkisi araştırılmıştır. Çalışmada düşük doz gama uygulamasının kısıtlı sulama koşullarında çeşitlere göre farklı sonuçlar verdiği görülmüştür. Gama ışın dozları %50 sulamada Gina çeşidinde kök boyunda önemli bir etki yaratırken, Romano çeşidinde 50 ve 100 Gy dozlarının sürgün boyu ile yaş ve kuru ağırlıklarda önemli bir artış sağlamıştır. MDA içeriği her iki çeşitte de su stresinde 50 ve 100 Gy gama ışını ile birlikte önemli miktarda azalmıştır. Düşük doz gama ışını uygulamasının özellikle Romano çeşidinde daha etkili olduğu ve genel olarak 50 ve 100 Gy gama ışın dozlarının kısıtlı sulamada uygulanabilir dozlar olduğu belirlenmiştir.
Show more [+] Less [-]Orange Peel and Cauliflower Residues Supplementation Induce Morphological and Physiological Tolerance in Common Bean under Drought Stress
2023
İlkay Yavaş | Elif Sude Çiçek
Drought is one of the most harmful abiotic stresses affecting the development and yield of the common bean (Phaseolus vulgaris L.). The current climate change and the resulting increased drought will worsen the negative impact of water stress on the plant. The powder of orange peel and cauliflower waste were added as soil supplementation at rates of 7 and 15 g/pot to pots of Phaseolus vulgaris L. under different drought conditions. The growth and physiological analysis were estimated after flowering period of common bean. In the pots where drought will be applied, irrigation was stopped for 2, 4, 6, 8 and 10 days during the flowering period and irrigation was performed again after water stress application. To measure moisture percentage of pots, first dry pots were weighed and after irrigation, their moisture variation in terms of percent was measured during stress from 2 to 10 days. The highest plant height was obtained from control. Leaf area decreased significantly despite the application of different powder, especially after 4 days of drought conditions. The highest root fresh and dry weight, raw ash were observed under control with the application of 7.5 g orange peel powder. Shoot dry weight decreased as the number of days exposed to drought increased, and the application of 15 g orange peel and cauliflower powder gave the highest results compared to control conditions. The highest dry matter was obtained from the application of 7.5 g and 15 cauliflower powder in the absence of drought. It has been revealed that as the duration of exposure to drought increases, the value decreases and plant powders are effective in increasing this value. Chlorophyll a, chlorophyll b and total chlorophyll values decreased significantly with drought, and the highest value was obtained from control conditions, followed by 15 cauliflower powder applications.
Show more [+] Less [-]Growth and Developmental Stages of Bean Plant
2014
Ramazan İlhan Aytekin | Sevgi Çalışkan
Uniform description of developmental stages in crops improve communication among producers, researchers and others. A standardized, accurate, and easy system is needed to describe bean (Phaseolus vulgaris L.) plant development. The objective of this study was to develop and describe stages of bean plant development in a manner which is simple but accurate. The biological cycle of the bean plant is divided into two successive phases: the vegetative stage (V) and the reproductive stage (R). Vegetative stages are determined by counting the number of trifoliolate leaves (V1 to VN) on the main stem beginning above the unifoliate leaf. Reproductive stages R1 and R2 are based on flowering, R3 and R4 on pod development, R5 and R6 on seed development, and R7, R8 and R9 on maturation.
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