Anopheline species were sampled in different ecotones at Maracá Ecological Station and in Cantá municipality, both in Roraima State, Brazil, in June 2016.  Nine species were recorded. Six species belong to the subgenus Nyssorhynchus and three species to the subgenus Anopheles. The most abundant species collected were Anopheles triannulatus s.l., Anopheles nuneztovari s.l. and Anopheles oswaldoi species B. The remaining species had frequencies lower than 10%. While A. triannulatus s.l. was the most frequent and the most widely distributed species in the studied area, Anopheles darlingi Root, the main malaria vector in the Brazilian Amazon region, was captured in two different ecotones and in low frequency. Our findings suggest that the risk of malaria outbreaks at Maracá Ecological Station may be low. This study also describes the first record of Anopheles costai Fonseca & Ramos in Maracá Ecological Station, Roraima State, increasing the distribution range of this taxon.