BrAPI - an Application Programming Interface for Plant Breeding Applications.
2019
Abbeloos, Rafael | Backlund, Jan Erik | Basterrechea Salido, Martin | Bauchet, Guillaume | Benites-Alfaro, Omar | Birkett, Clay | Calaminos, Viana C | Carceller, Pierre | Cornut, Guillaume | Vasques Costa, Bruno | Edwards, Jeremy D | Finkers, Richard | Gao, Star Yanxin | Ghaffar, Mehmood | Glaser, Philip | Guignon, Valentin | Hok, Puthick | Kilian, Andrzej | König, Patrick | Lagare, Jack Elendil B | Lange, Matthias | Laporte, Marie-Angélique | Larmande, Pierre | Lebauer, David | Lyon, David | Marshall, David | Matthews, Dave | Milne, Iain | Mistry, Naymesh | Morales, Nicolas | Mueller, Lukas | Neveu, Pascal | Papoutsoglou, Evangelia | Pearce, Brian | Perez-Masias, Ivan | Pommier, Cyril | Ramirez-Gonzalez, Ricardo H | Rathore, Abhishek | Raque, Angel M | Raubach, Sebastian | Rife, Trevor | Robbins, Kelly | Rouard, Mathieu | Sarma, Chaitanya | Scholz, Uwe | Selby, Peter | Sempere, Guilhem | Shaw, Paul | Simon, Reinhard | Soldevilla, Nahuel | Stephen, Gordon | Sun, Qi | Tovar, Clarysabel | Uszynski, Grzegorz | Verouden, Maikel | VIB [Belgium] | Leibniz Institute of Plant Genetics and Crop Plant Research [Gatersleben] (IPK-Gatersleben) | Boyce Thompson Institute [Ithaca] | International Potato Center = Centre International de la Pomme de terre (CIP) ; Consultative Group on International Agricultural Research [CGIAR] (CGIAR) | USDA-ARS : Agricultural Research Service | International Rice Research Institute [Philippines] (IRRI) ; Consultative Group on International Agricultural Research [CGIAR] (CGIAR) | Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad) | Unité de Recherche Génomique Info (URGI) ; Institut National de la Recherche Agronomique (INRA) | Instituto de Biologia Experimental e Tecnológica (IBET) | Wageningen University and Research [Wageningen] (WUR) | Cornell University [New York] | CGIAR | Diversity Arrays Technology Pty Ltd (DArT P/L) | Institut de Recherche pour le Développement (IRD) | Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM) ; Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM) | University of Arizona | The James Hutton Institute | Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie (MISTEA) ; Institut National de la Recherche Agronomique (INRA)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro) | John Innes Centre [Norwich] ; Biotechnology and Biological Sciences Research Council (BBSRC) | International Crops Research Institute for the Semi-Arid Tropics [Inde] (ICRISAT) ; Consultative Group on International Agricultural Research [CGIAR] (CGIAR) | Kansas State University | Gates Foundation ; Bioversity International ; Federal Ministry of Education & Research (BMBF) : FKZ 031A536A, 031B0190A ; Boyce Thompson Institute for Plant Research CGIAR Research Program on Roots, Tubers and Bananas, Cornell University Excellence in Breeding Platform | ANR-11-INBS-0012,PHENOME,Centre français de phénomique végétale(2011)
International audience
Mostrar más [+] Menos [-]Inglés. Motivation Modern genomic breeding methods rely heavily on very large amounts of phenotyping and genotyping data, presenting new challenges in effective data management and integration. Recently, the size and complexity of datasets have increased significantly, with the result that data is often stored on multiple systems. As analyses of interest increasingly require aggregation of datasets from diverse sources, data exchange between disparate systems becomes a challenge. Results To facilitate interoperability among breeding applications, we present the public plant Breeding Application Programming Interface (BrAPI). BrAPI is a standardized web service Application Programming Interface (API) specification. The development of BrAPI is a collaborative, community-based initiative involving a growing global community of over a hundred participants representing several dozen institutions and companies. Development of such a standard is recognized as critical to a number of important large breeding system initiatives as a foundational technology. Â The focus of the first version of the API is on providing services for connecting systems and retrieving basic breeding data including germplasm, study, observation, and marker data. A number of BrAPI-enabled applications, termed BrAPPs, have been written, that take advantage of the emerging support of BrAPI by many databases. Availability and Implementation More information on BrAPI, including links to the specification, test suites, BrAPPs, and sample implementations is available at https://brapi.org/. The BrAPI specification and the developer tools are provided as free and open source.
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