A Comprehensive Analysis of the 9-Cis Epoxy Carotenoid Dioxygenase Gene Family and Their Responses to Salt Stress in Hordeum vulgare L.
2024
Fatima Omari Alzahrani
Barley (Hordeum vulgare L.) is among the earliest crops to be cultivated and is also considered a crucial staple crop. Nevertheless, the negative effects of abiotic stress on both the quality and productivity of barley are significant. Nine-cis-epoxycarotenoid dioxygenases (NCEDs) are rate-limiting enzymes in plants that cleave carotenoids and produce abscisic acid (ABA). The poor utilization of barley NCEDs in stress-resistant genetic breeding is due to the lack of appropriate information about their potential function in abiotic stress. The current study revealed five NCED genes in the barley genome (HvNCED1&mdash:HvNCED5), which are distributed unevenly on barley chromosomes. The PF03055 domain is present in all HvNCEDs, and they encode 413~643 amino acids. Phylogenetic analysis showed that NCED genes were categorized into three distinct clades, confirming the homology of NCED genes between H. vulgare L., Arabidopsis thaliana L., and Oryza sativa L. Expression analysis revealed that HvNCED1 is significantly upregulated under high salt stress, indicating its potential role in enhancing salt tolerance. In contrast, HvNCED3 and HvNCED4 exhibited downregulation, suggesting a complex regulatory mechanism in response to varying salt stress levels. These findings will enhance our comprehension of the genetic composition and evolutionary development of the HvNCED gene family and provide a basis for future research on their role in response to salt-induced stress.
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