A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties
2025
Addison, Sarah, L | Mendoza, Luciana, L | Rúa, Megan, A | Clinton, Peter, W | Dimitrios, Avtzis | Mark R., Bakker | Tiara, Barriga-Barra | Vanina, Benoit | Frédéric, Bernier | Helena, Bragança | Nicolas, Cobo | Pierre-Emmanuel, Courty | Kaitlyn, Daley | Barbara Doyle, Prestwich | Nina, Eichler | Joan Antoni, Estades | Mariangela, Fotelli | Alain, Gardiennet | Sahar, Gharabaghlou | Madeline R., Greene | Anna, Harris | Javier, Herrero | Isabel, Henriques | Emma, Hutchinson | Dean, Irving | Lewis, Jewell | Victoria, Knight | Margarita, Lema | Frederico, Leitão | Eoin, Lettice | Johannes J. Le, Roux | Falko, Mathes | Lucía, Molina | Itumeleng, Moroenyane | Arpan, Mukherjee | Claire, Nolan | Ida, Nordström | Maria Belen, Pildain | Glória, Pinto | Jay Prakash, Verma | Ana, Silva | Mariah, Slaughter | Simeon, Smaill | Marjorie, Santamaria | Sarah J., Sapsford | Sabai, Shwe | Roberto, Touza | Rodrigo, Vargas-Gaete | Louise V, Édrenne | Yanliang, Wang | Zhen-Zhen, Yan | Fuqiang, Yu | Jing, Yuan | Mnqobi, Zuma. | Wakelin, Steven | Bioeconomy Science Institute | Grupo de Ecología y Conservación de Islas (GECI) | Wright State University | Scion [New Zealand] | Ellinikos Georgikos OrGanismos-DIMITRA (ELGO -DIMITRA) | Interactions Sol Plante Atmosphère (UMR ISPA) ; Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Biologie intégrée pour la valorisation de la diversité des Arbres et de la Forêt (BioForA) ; Office National des Forêts (ONF)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Unité expérimentale Forêt Pierroton (UEFP) ; Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Instituto Nacional de Investigação Agrária e Veterinária = National Institute for Agrarian and Veterinary Research [Oeiras, Portugal] (INIAV) | Instituto de Tecnologia Química e Biológica António Xavier (ITQB) ; Universidade Nova de Lisboa = NOVA University Lisbon (NOVA) | Agroécologie [Dijon] ; Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Dijon ; Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Université Bourgogne Europe (UBE) | European Bioinformatics Institute [Hinxton] (EMBL-EBI) ; EMBL Heidelberg | Universidade de Coimbra = University of Coimbra [Portugal] (UC)
Global Tree Root Microbiome Consortium Author List : Dimitrios Avtzis, Mark R. Bakker, Tiara Barriga-Barra, Vanina Benoit, Frédéric Bernier, Helena Bragança, Nicolas Cobo, Pierre-Emmanuel Courty, Kaitlyn Daley, Barbara Doyle Prestwich, Nina Eichler, Joan Antoni Estades, Mariangela Fotelli, Alain Gardiennet, Sahar Gharabaghlou, Madeline R. Greene, Anna Harris, Javier Herrero, Isabel Henriques, Emma Hutchinson, Dean Irving, Lewis Jewell, Victoria Knight, Margarita Lema, Frederico Leitão, Eoin Lettice, Johannes J. Le Roux, Falko Mathes, Lucía Molina, Itumeleng Moroenyane, Arpan Mukherjee, Claire Nolan, Ida Nordström, Maria Belen Pildain, Glória Pinto, Jay Prakash Verma, Ana Silva, Mariah Slaughter, Simeon Smaill, Marjorie Santamaria, Sarah J. Sapsford, Sabai Shwe, Roberto Touza, Rodrigo Vargas-Gaete, Louise V édrenne, Yanliang Wang, Zhen-Zhen Yan, Fuqiang Yu, Jing Yuan, Mnqobi Zuma.
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Mostrar más [+] Menos [-]Inglés. Pinus radiata D. Don is one of the most widely planted conifer species globally. While it holds major commercial importance as a softwood plantation tree, its native populations are endangered, making it a species of high conservation value. Here, we present a comprehensive dataset of genetic variation in P. radiata, derived from 821 trees (113 endemic and 708 introduced) sampled across 16 countries. These include both highly domesticated material used in commercial forestry and genetically unaltered individuals from endemic populations. Genotyping was performed using genotype-by-sequencing (GBS), also known as double-digest RAD sequencing (ddRADseq), from P. radiata needle-derived genomic DNA. Alongside the SNP-by-sample dataset, we provide an identity-by-state (IBS) matrix capturing genetic relatedness among individuals. These resources can help trace the genetic origins of current tree breeding selections, identify opportunities to introgress novel genetic material to improve form, growth, and resilience, understand invasiveness of the taxon and guide efforts in conservation and restoration while maintaining the genetic integrity of endemic populations of this globally important species.
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