The Bird’s Head Seascape located in eastern Indonesia is the global epicenter of tropical shallow water marine biodiversity with over 600 species of corals and 1,638 species of coral reef fishes. The Seascape also includes critical habitats for globally threatened marine species, including sea turtles and cetaceans. Since 2001, the region has undergone rapid development in fisheries, oil and gas extraction, mining and logging. The expansion of these sectors, combined with illegal activities and poorly planned coastal development, is accelerating deterioration of coastal and marine environments. At the same time, regency governments have expanded their marine protected area networks to cover 3,594,702ha of islands and coastal waters. Low population numbers, relatively healthy natural resources and a strong tenure system in eastern Indonesia provide an opportunity for government and local communities to collaboratively manage their resources sustainably to ensure long-term food security, while meeting their development aspirations.

Hydrodynamic functioning and water circulation of the semi-closed deep lagoon of Ahe atoll (Tuamotu Archipelago, French Polynesia) were investigated using 1year of field data and a 3D hydrodynamical model. Tidal amplitude averaged less than 30cm, but tide generated very strong currents (2ms⁻¹) in the pass, creating a jet-like circulation that partitioned the lagoon into three residual circulation cells. The pass entirely flushed excess water brought by waves-induced radiation stress. Circulation patterns were computed for climatological meteorological conditions and summarized with stream function and flushing time. Lagoon hydrodynamics and general overturning circulation was driven by wind. Renewal time was 250days, whereas the e-flushing time yielded a lagoon-wide 80-days average. Tide-driven flush through the pass and wind-driven overturning circulation designate Ahe as a wind-driven, tidally and weakly wave-flushed deep lagoon. The 3D model allows studying pearl oyster larvae dispersal in both realistic and climatological conditions for aquaculture applications.

In the present work, fat, skin, liver and muscle samples from Leptonychotes weddellii (Weddell seal, n=2 individuals), Lobodon carcinophagus (crabeater seal, n=2), Arctocephalus gazella (Antarctic fur seal, n=3) and Mirounga leonina (southern elephant seal, n=1) were collected from King George Island, Antarctica, and analysed for POPs (PCBs, organochlorine pesticides and PBDEs) and stable isotopes (δ¹³C and δ¹⁵N in all tissues but fat). PBDEs could be found in only one sample (L. weddellii fat). Generally, PCBs (from 74 to 523ngg⁻¹lw), DDTs (from 14 to 168ngg⁻¹lw) and chlordanes (from 9 to 78ngg⁻¹lw) were the prevailing compounds. Results showed a clear stratification in accordance with ecological data. Nonetheless, stable isotope analyses provide a deeper insight into fluctuations due to migrations and nutritional stress. Correlation between δ¹⁵N and pollutants suggests, to some degree, a considerable ability to metabolize and/or excrete the majority of them.

There are numerous known impacts of derelict fishing gear (DFG) to marine ecosystems and safe navigation around the world. To mitigate these impacts, the preemptive detection and removal of DFG at sea are being pursued. This special issue focuses on the North Pacific Ocean because of historic and ongoing research on DFG in the area, particularly as it relates to the Hawaiian Archipelago. In order to develop an effective detection strategy, information and expertise from three disciplines must be integrated: marine debris, oceanography, and remote sensing technology. Building upon results and discussions during a workshop held in December 2008, this special issue provides both results of original research and review papers, pursuing each discipline as it relates to DFG and outlining a multi-faceted strategy to effectively detect DFG at sea. This strategy serves as a roadmap, taking us closer to realizing the goal of detecting and removing DFG at sea.

At-sea detection of marine debris presents a difficult problem, as the debris items are often relatively small and partially submerged. However, they may accumulate in water parcel boundaries or eddy lines. The application of models, satellite radar and multispectral data, and airborne remote sensing (particularly radar) to focus the search on eddies and convergence zones in the open ocean appear to be a productive avenue of investigation. A multistage modeling and remote sensing approach is proposed for the identification of areas of the open ocean where debris items are more likely to congregate. A path forward may best be achieved through the refinement of the Ghost Net procedures with the addition of a final search stage using airborne radar from an UAS simulator aircraft to detect zones of potential accumulation for direct search. Sampling strategies, direct versus indirect measurements, remote sensing resolution, sensor/platform considerations, and future state are addressed.

Land use (and land management) change is seen as the primary factor responsible for changes in sediment and nutrient delivery to water bodies. Understanding how sediment and nutrient (or constituent) concentrations vary with land use is critical to understanding the current and future impact of land use change on aquatic ecosystems. Access to appropriate land-use based water quality data is also important for calculating reliable load estimates using water quality models. This study collated published and unpublished runoff, constituent concentration and load data for Australian catchments. Water quality data for total suspended sediments (TSS), total nitrogen (TN) and total phosphorus (TP) were collated from runoff events with a focus on catchment areas that have a single or majority of the contributing area under one land use. Where possible, information on the dissolved forms of nutrients were also collated. For each data point, information was included on the site location, land use type and condition, contributing catchment area, runoff, laboratory analyses, the number of samples collected over the hydrograph and the mean constituent concentration calculation method. A total of ∼750 entries were recorded from 514 different geographical sites covering 13 different land uses. We found that the nutrient concentrations collected using “grab” sampling (without a well defined hydrograph) were lower than for sites with gauged auto-samplers although this data set was small and no statistical analysis could be undertaken. There was no statistically significant difference (p<0.05) between data collected at plot and catchment scales for the same land use. This is most likely due to differences in land condition over-shadowing the effects of spatial scale. There was, however, a significant difference in the concentration value for constituent samples collected from sites where >90% of the catchment was represented by a single land use, compared to sites with <90% of the upstream area represented by a single land use. This highlights the need for more single land use water quality data, preferably over a range of spatial scales. Overall, the land uses with the highest median TSS concentrations were mining (∼50,000mg/l), horticulture (∼3000mg/l), dryland cropping (∼2000mg/l), cotton (∼600mg/l) and grazing on native pastures (∼300mg/l). The highest median TN concentrations are from horticulture (∼32,000μg/l), cotton (∼6500μg/l), bananas (∼2700μg/l), grazing on modified pastures (∼2200μg/l) and sugar (∼1700μg/l). For TP it is forestry (∼5800μg/l), horticulture (∼1500μg/l), bananas (∼1400μg/l), dryland cropping (∼900mg/l) and grazing on modified pastures (∼400μg/l). For the dissolved nutrient fractions, the sugarcane land use had the highest concentrations of dissolved inorganic nitrogen (DIN), dissolved organic nitrogen (DON) and dissolved organic phosphorus (DOP). Urban land use had the highest concentrations of dissolved inorganic phosphorus (DIP). This study provides modellers and catchment managers with an increased understanding of the processes involved in estimating constituent concentrations, the data available for use in modelling projects, and the conditions under which they should be applied. Areas requiring more data are also discussed.

The biofiltration capacity, biomass-yield and accumulation of N- and C-compounds of Hydropuntia cornea were analyzed. Algae were grown in different conditions for 28d: outdoor and indoor, with or without fishpond effluents. N-uptake efficiency of these effluents was higher than 95% after 7d both outdoors and indoors. N-enriched conditions reduced the extent of photoinhibition and increased the maximal quantum yield in H. cornea. The biomass-yield was higher in outdoor grown-algae after 7d and decreased independently of the treatment after 28d. N, acid polysaccharide (AP) and mycosporine-like amino acid (MAA)-yields decreased throughout the experiment in all conditions. The highest MAA-yield was observed in fishpond effluent outdoor-grown algae, indicating a positive effect of increased radiation on MAA accumulation. However, APs were higher under N-depleted conditions. The use of MAAs as UV-screening and antioxidants, and the use of AP as immunostimulants are discussed.

No baseline existed for the radionuclides in Kuwait territorial water. With changing trend in the region to embrace nuclear energy, the baseline study is imperative to create a reference and to record the influence-functioning of upcoming power plants. The first one in Bushehr, Iran is ready to start and several more are likely to come-up in UAE, Saudi Arabia and Kuwait. The present baseline concentration of the four considered radionuclide’s show low concentration of tritium, polonium, strontium and cesium; their concentration is comparable to most oceanic waters.

Benthic macroinvertebrates communities are the most consistently emphasized biotic component of aquatic ecosystems and are one of the biological indicators required for assessment by the European Water Framework Directive. In this context, several indices based on these communities have been developed in order to assess ecological quality of estuarine systems. In the present work we used AMBI, M-AMBI, BENTIX and BAT to distinguish ecological status of five small estuarine systems of the Portuguese south and southwest coasts. Although indices outputs did not differ between systems and sampling seasons, results indicated that the metrics in which these indices are based could differentiate community structures as a result of two main gradients that force these communities: the natural variability, and the anthropogenic impact.