Molecular and Phenotypic Detection of the Resistance Profile to β-Lactams and Colistin of Salmonella spp. Isolated from Broilers’ Litter

ABSTRACT This study aimed to analyze 19 isolates of Salmonella spp., from broiler litter swabs in the State of São Paulo, by typing and analyzing the detection of resistance genes associated with ESBL’s (Extended Spectrum Beta Lactamase), AMPC (C-type cephalosporinases) and carbapenemases by molecular and phenotypic techniques. A PCR microarray platform (Check and Trace by Check-Points) was used to identify the isolated serotype. The isolates were also evaluated for identification of carbapenemase genes, MCR 1-2 (colistin resistance), AmpC (C-type cephalosporins), and ESBLs (β-lactamases resistance). To identify phenotypic antibiotic resistance, the minimal inhibitory concentration (MIC) was evaluated with the antibiotics meropenem, amoxicillin, and ceftriaxone. The most prevalent serotypes identified were S. Infantis and S. Saintpaul, with a prevalence of 15.07% (3/19). Other strains identified were S. Cerro, S. Sandiego, S. Kentucky, S. Alachua, S. Javiana, S. Livingstone, S. Typhimurium, S. Heidelberg, non-enteric Salmonella, and a Salmonella not typifiable by the typing kit. All samples were negative for identifying carba resistance genes, MCR, ESBL, and AmpC. In the phenotypic profile, meropenem was the least resistant, while amoxicillin and ceftriaxone showed a high resistance pattern. The results show that phenotypic resistance is not associated with the presence of resistance genes studied here. In addition, the resistant bacteria found in MIC have resistance mechanisms not associated with the genes studied here. Additional measures must be implemented to prevent the indiscriminate use of antimicrobial agents therapeutically or as growth promoters.