Long-term fertilizer application effects on the soil, root arbuscular mycorrhizal fungi and community composition in rotation agriculture

Arbuscular mycorrhizal fungi (AMF) play key roles in plant growth, ecosystem sustainability and stability. However, it is still unclear how the soil, root AMF growth and community composition are affected by fertilizer application in subtropical wheat–rice rotation agro-ecosystems. We investigated the impact of different organic and/or inorganic fertilizers on AMF growth and community composition in a long-term experiment field in Zhejiang Province, east China. AMF biomass was determined using 16:1ω5 phospholipid fatty acids (PLFAs) and neutral lipid fatty acids (NLFAs) content. Soil and root AMF community compositions were determined by DGGE analysis, cloning, sequencing and phylogenetic analyses. The root colonization rate was not significantly affected by different fertilizer regimes. Manure amendment significantly enhanced both AMF hyphal (i.e., 16:1ω5 PLFA) and spore (i.e., 16:1ω5 NLFA) biomass content, while inorganic fertilizer only increased the AMF spore biomass. A total of 10 and 11 Glomeromycota phylotypes were detected in soil and root samples, respectively. Glomus was the dominant genus in both soil and root samples, while Acaulospora genus occurred in roots only. Although the different fertilizers altered soil AMF communities, the root AMF community structure was not significantly altered. Soil pH (F=5.695, P<0.01) and available K (F=4.888, P<0.01) contributed to both soil and root AMF community composition, while the C/P ratio (F=3.893, P<0.01) only contributed to soil AMF community. The data suggests that high soil organic C content benefits AMF growth, while soil pH and available K concentration strongly influence AMF community. The root AMF community was much more resilient to the changes caused by long-term fertilizer application than the soil community.