On the use of marker information from granddaughter designs
1993
Hoeschele, Ina | Romano, E.O.
SUMMARY: Selection indices were developed for combining marker information and animal model PTA for offspring, grandoffspring, and great-grandoffspring of sires. The sires had marker-QTL linkages identified in granddaughter designs (GDD). Effects of size and s. e. of marker effects and of weight given to own and progeny records in PTA on gain in accuracy of selection due to a marker were quantified. Gains were negligible for high weight or large s. e., even if the marker effect was substantial. Gains were compared among offspring (O), grandoffspring (GO), and great-grandoffspring (GGO), when the marker effect in the sire was the only marker information. Gains decreased strongly for GO and were smallest for GGO. Assuming that progeny test (PT) daughters of some sons of the sire were also marker genotyped, the selection index was mo dified to incorporate this marker information on sons in addition to that on the sire from the GDD for selection of GO. For the current size of the PT, gain from including marker data on PT daughters was negligible, requiring 200 to 1000 PT daughters. Polymorphism Information Content (PIC) was computed as the fraction of O, GO, and GGO with marker allelic inheritance traceable to the sire. PIC in GO exceeded .8 and approached PIC in O only if a marker had at least 10 alleles at equal frequencies.
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