microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
2024
Zuffa, Simone | Schmid, Robin | Bauermeister, Anelize | Gomes, Paulo Wender P. | Caraballo-Rodriguez, Andres M | El Abiead, Yasin | Aron, Allegra T. | Gentry, Emily C. | Zemlin, Jasmine | Meehan, Michael J. | Avalon, Nicole E. | Guan, Xue Li | Cui, Jerry J. | Ju, Kou-San | Silva, Denise Brentan | Silva, Fernanda Motta Ribeiro | da Silva, Gilvan Ferreira | Koolen, Hector H. F. | Grundmann, Carlismari | Clement, Jason A. | Mohimani, Hosein | Broders, Kirk | McPhail, Kerry L. | Ober-Singleton, Sidnee E. | Rath, Christopher M. | McDonald, Daniel | Knight, Rob | Wang, Mingxun | Dorrestein, Pieter C. | Cichewicz, Robert H. | Buzun, Ekaterina | Terrazas, Marvic Carrillo | Hsu, Chia-Yun | Oles, Renee | Ayala, Adriana Vasquez | Zhao, Jiaqi | Chu, Hiutung | Kuijpers, Mirte C. M. | Jackrel, Sara L | Tugizimana, Fidele | Nephali, Lerato Pertunia | Dubery, Ian A | Madala, Ntakadzeni Edwin | Moreira, Eduarda Antunes | Costa-Lotufo, Leticia Veras | Lopes, Norberto Peporine | Rezende-Teixeira, Paula | Jimenez, Paula C. | Rimal, Bipin | Patterson, Andrew D. | Traxler, Matthew F. | Pessotti, Rita de Cassia | Alvarado-Villalobos, Daniel | Tamayo-Castillo, Giselle | Chaverri, Priscila | Escudero-Leyva, Efrain | Quiros-Guerrero, Luis-Manuel | Bory, Alexandre Jean | Joubert, Juliette | Rutz, Adriano | Wolfender, Jean-Luc | Allard, Pierre-Marie | Sichert, Andreas | Pontrelli, Sammy | Pullman, Benjamin S. | Bandeira, Nuno | Gerwick, William H. | Gindro, Katia | Massana-Codina, Josep | Wagner, Berenike C. | Forchhammer, Karl | Petras, Daniel | Aiosa, Nicole | Garg, Neha | Liebeke, Manuel | Bourceau, Patric | Kang, Kyo Bin | Gadhavi, Henna | de Carvalho, Luiz Pedro Sorio | Silva Dos Santos, Mariana | Pérez-Lorente, Alicia Isabel | Molina-Santiago, Carlos | Romero, Diego | Franke, Raimo | Brönstrup, Mark | Vera Ponce de León, Arturo | Pope, Phillip Byron | La Rosa, Sabina Leanti | La Barbera, Giorgia | Roager, Henrik M. | Laursen, Martin Frederik | Hammerle, Fabian | Siewert, Bianka | Peintner, Ursula | Licona-Cassani, Cuauhtemoc | Rodriguez-Orduña, Lorena | Rampler, Evelyn | Hildebrand, Felina | Koellensperger, Gunda | Schoeny, Harald | Hohenwallner, Katharina | Panzenboeck, Lisa | Gregor, Rachel | O'Neill, Ellis Charles | Roxborough, Eve Tallulah | Odoi, Jane | Bale, Nicole J. | Ding, Su | Sinninghe Damsté, Jaap S | Department of Agriculture (US) | National Center for Complementary and Integrative Health (US) | National Research Foundation of Korea | Austrian Science Fund | German Research Foundation | Fundação de Amparo à Pesquisa do Estado de São Paulo | Consejo Nacional de Ciencia y Tecnología (México) | 0000-0001-7237-3402 | 0000-0003-0922-3887 | 0000-0001-5478-2448 | 0000-0002-0016-8132 | 0000-0003-3588-892X | 0000-0002-5283-1020 | 0000-0001-7489-0446 | 0000-0002-5409-2129 | 0000-0002-9079-4769 | 0000-0002-8159-3658 | 0000-0003-2073-0070 | 0000-0001-8430-595X | 0000-0003-0805-8613 | 0000-0002-4912-8895 | 0000-0003-4440-4296 | 0000-0002-1630-8697 | 0000-0002-0125-952X | 0000-0003-3389-2191 | 0000-0002-1386-5535 | 0000-0001-6265-8842 | 0000-0001-9439-1249 | 0000-0002-7691-7531 | 0000-0003-3199-8101 | 0000-0002-6561-3022 | 0000-0002-2339-1409 | 0000-0003-3290-1017 | 0009-0007-8317-9729 | 0000-0003-2404-8490 | 0000-0002-1131-8917 | 0000-0002-2052-6515 | 0000-0002-5407-5521 | 0000-0002-8971-7045 | 0000-0002-2067-4059 | 0000-0003-3527-8101 | 0000-0003-0583-906X | 0000-0002-2504-8313 | 0000-0001-6017-7121 | 0000-0002-1877-3875 | 0000-0002-6946-6744 | 0000-0001-8696-481X | 0000-0002-4957-1344 | 0000-0001-6694-3499 | 0000-0002-5941-2806 | 0000-0001-6213-3982 | 0000-0002-5189-8178 | 0000-0002-8165-7340 | 0000-0003-0438-6740 | Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbe-derived metabolites and relative producers without a priori knowledge will vastly enhance the understanding of microorganisms' role in ecology and human health.
Afficher plus [+] Moins [-]This project was supported in part by the US Department of Agriculture, Agricultural Research Service. A.M.C.-R. and H.M. were supported by NIH grant 1DP2GM137413. Research reported in this publication was supported in part by the National Center for Complementary and Integrative Health of the NIH under award number F32AT011475 to N.E.A. K.B.K. was supported by National Research Foundation of Korea (NRF) grants funded by the Korean Government (MSIT) (NRF 2020R1C1C1004046, 2022R1A5A2021216 and 2022M3H9A2096191). B.S. was supported by the Austrian Science Fund (FWF) P31915 and K.H. was financed by the FWF research group programme (grant FG3). D.P. was supported by the German Research Foundation (DFG) CMFI Cluster of Excellence (EXC 2124) and Collaborative Research Center CellMap
Afficher plus [+] Moins [-]Peer reviewed
Afficher plus [+] Moins [-]Mots clés AGROVOC
Informations bibliographiques
Cette notice bibliographique a été fournie par Instituto de Hortofruticultura Subtropical y Mediterránea La Mayora
Découvrez la collection de ce fournisseur de données dans AGRIS