This viewpoint paper explores the potential of genomics technology to provide accurate, rapid, and cost efficient observations of the marine environment. The use of such approaches in next generation marine monitoring programs will help achieve the goals of marine legislation implemented world-wide. Genomic methods can yield faster results from monitoring, easier and more reliable taxonomic identification, as well as quicker and better assessment of the environmental status of marine waters.

Due to technical limitations, there have been minimal studies performed on thermal preferences and thermotactic behaviors of aquatic ectotherm species commonly used in ecotoxicity testing. In this work, we demonstrate an innovative, purpose-built and miniaturized electrothermal array for rapid thermal preference behavioral tests. We applied the novel platform to define thermal preferences in multiple invertebrate and vertebrate species. Specifically, Dugesia notogaea (freshwater planarians), Chironomus tepperi (nonbiting midge larvae), Ostracoda (seed shrimp), Artemia franciscana (brine shrimp), Daphnia carinata (water flea), Austrochiltonia subtenuis (freshwater amphipod), Physa acuta (freshwater snail), Potamopyrgus antipodarum (New Zealand mud snail) and larval stage of Danio rerio (zebrafish) were tested. The Australian freshwater water fleas, amphipods, snail Physa acuta as well as zebrafish exhibited the most consistent preference to cool zones and clear avoidance of zones >27 °C out of nine species tested. Our results indicate the larval stage of zebrafish as the most responsive species highly suitable for prospective development of multidimensional behavioral test batteries. We also showcase preliminary data that environmentally relevant concentrations of pharmaceutical pollutants such as non-steroidal anti-inflammatory drug (NSAID) ibuprofen (9800 ng/L) and insecticide imidacloprid (4600 ng/L) but not anti-depressant venlafaxine (2200 ng/L) and (iv) anticonvulsant medications gabapentin (400 ng/L) can perturb thermal preference behavior of larval zebrafish. Collectively our results demonstrate the utility of simple and inexpensive thermoelectric technology in rapid exploration of thermal preference in diverse species of aquatic animals. We postulate that more broadly such technologies can also have added value in ecotoxicity testing of emerging contaminants.

Airborne bacteria may absorb the substance from the atmospheric particles and play a role in biogeochemical cycling. However, these studies focused on a few culturable bacteria and the samples were usually collected from one site. The metabolic potential of a majority of airborne bacteria on a regional scale and their driving factors remain unknown. In this study, we collected particulates with aerodynamic diameter ≤2.5 μm (PM₂.₅) from 8 cities that represent different regions across China and analyzed the samples via high-throughput sequencing of 16S rRNA genes, quantitative polymerase chain reaction (qPCR) analysis, and functional database prediction. Based on the FAPROTAX database, 326 (80.69%), 191 (47.28%) and 45 (11.14%) bacterial genera are possible to conduct the pathways of carbon, nitrogen, and sulfur cycles, respectively. The pathway analysis indicated that airborne bacteria may lead to the decrease in organic carbon while the increase in ammonium and sulfate in PM₂.₅ samples, all of which are the important components of PM₂.₅. Among the 19 environmental factors studied including air pollutants, meteorological factors, and geographical conditions, PM₂.₅ concentration manifested the strongest correlations with the functional genes for the transformation of ammonium and sulfate. Moreover, the PM₂.₅ concentration rather than the sampling site will drive the distribution of functional genera. Thus, a bi-directional relationship between PM₂.₅ and bacterial metabolism is suggested. Our findings shed light on the potential bacterial pathway for the biogeochemical cycling in the atmosphere and the important role of PM₂.₅, offering a new perspective for atmospheric ecology and pollution control.

The distribution, feeding ecology and microplastic contamination were assessed in different ontogenetic phases of Haemulidae species inhabiting the Goiana Estuary, over a seasonal cycle. Pomadasys ramosus and Haemulopsis corvinaeformis are estuarine dependent species that use habitats with specific environmental conditions each season. Pomadasys ramosus was found in the upper and middle estuaries during the rainy season, when salinity showed the lowest values. Haemulopsis corvinaeformis was found in the lower estuary during the dry season, when salinity increased in the estuary. Juveniles of P. ramosus are zooplanktivores, feeding mainly on calanoid copepods. Sub-adults and adults are zoobenthivores, feeding on invertebrates associated to the bottom, mainly Polychaeta. Juveniles of H. corvinaeformis were not found in the main channel, but sub-adults and adults showed a zoobenthivore habit, feeding mainly on Anomalocardia flexuosa (Mollusca: Bivalvia). Dietary shifts along the life cycle and the spatio-temporal relationship between their distribution and the availability of microplastics along the estuary seem to have a strong influence in the ingestion of microfilaments. The highest average ingestion of microfilaments by P. ramosus coincided with the peak of ingestion of Polychaeta by sub-adults in the upper estuary during the late rainy season. For H. corvinaeformis the highest ingestion of microfilaments coincided with the peak of ingestion of A. flexuosa by adults in the lower estuary during the late dry season. Such contamination might be attributed to the time when these phases shifted to a more diverse diet and began to forage on benthic invertebrates. Research on microplastic contamination must consider species-specific behaviour, since the intake of microplastics is dependent on patterns of distribution and trophic guild within fish assemblages.

Animal wastewater lagoons nearby concentrated animal feeding operations (CAFOs) represent the latest tendency in global animal farming, severely impacting the magnitude of greenhouse gas emissions, including nitrous oxide (N₂O). We hypothesized that lagoon wastewater could be supersaturated with N₂O as part of incomplete microbial nitrification/denitrification processes, thereby regulating the N₂O partitioning in the gaseous phase. The objectives of this study were: (i) to investigate the magnitude of dissolved N₂O concentrations in the lagoon; and (ii) to determine the extent to which supersaturation of N₂O occurs in wastewater lagoons. Dissolved N₂O concentrations in the wastewater samples were high, ranging from 0.4 to 40.5 μg N2O mL⁻¹. Calculated dissolved N₂O concentrations from the experimentally measured partition coefficients were much greater than those typically expected in aquatic systems (<0.6 μg N₂O mL⁻¹). Knowledge of the factors controlling the magnitude of N₂O supersaturation could potentially bridge mass balance differences between in situ measurements and global N₂O models. Supersaturation of nitrous oxide may occur in lagoons near concentrated animal feeding operations.

The degradation of a chiral nonylphenol isomer, 4-(1-ethyl-1,4-dimethylpentyl)phenol (NP₁₁₂), in two agricultural soils from Monheim and Dortmund, Germany has been studied. The degradation of NP₁₁₂ and the formation of a nitro-nonylphenol metabolite were determined by means of GC-MS analysis. The degradation followed bi-exponential order kinetics, with half-life of less than 5 days in both soils. The nitro-metabolite was found at different concentration levels in the two soils. The nitro-metabolite of NP₁₁₂ was more persistent than its parent compound. After 150 days about 13% of the initially applied NP₁₁₂ remained in the Monheim soil as its nitro-metabolite. Results of the E-screen assay revealed that the nitro-NP₁₁₂ has oestrogenic potency of 85% of that of NP₁₁₂. Furthermore, the results of chiral GC-MS analysis revealed that no chiral degradation of NP₁₁₂ occurred in this study. The degradation of a chiral nonylphenol isomer in agricultural soils followed bi-exponential order kinetics resulting in a more persistent nitro-metabolite.

Biodegradation of chlorobenzenes was assessed at an anoxic aquifer by combining hydrogeochemistry and stable isotope analyses. In situ microcosm analysis evidenced microbial assimilation of chlorobenzene (MCB) derived carbon and laboratory investigations asserted mineralization of MCB at low rates. Sequential dehalogenation of chlorinated benzenes may affect the isotope signature of single chlorobenzene species due to simultaneous depletion and enrichment of 13C, which complicates the evaluation of degradation. Therefore, the compound-specific isotope analysis was interpreted based on an isotope balance. The enrichment of the cumulative isotope composition of all chlorobenzenes indicated in situ biodegradation. Additionally, the relationship between hydrogeochemistry and degradation activity was investigated by principal component analysis underlining variable hydrogeochemical conditions associated with degradation activity at the plume scale. Although the complexity of the field site did not allow straightforward assessment of natural attenuation processes, the application of an integrative approach appeared relevant to characterize the in situ biodegradation potential. Lines of evidence for in situ biodegradation of chlorinated benzenes in an anoxic aquifer by combining hydrogeochemical and stable isotope data with multivariate statistics.

There are strong drivers to increasingly adopt bioremediation as an effective technique for risk reduction of hydrocarbon impacted soils. Researchers often rely solely on chemical data to assess bioremediation efficiently, without making use of the numerous biological techniques for assessing microbial performance. Where used, laboratory experiments must be effectively extrapolated to the field scale. The aim of this research was to test laboratory derived data and move to the field scale. In this research, the remediation of over thirty hydrocarbon sites was studied in the laboratory using a range of analytical techniques. At elevated concentrations, the rate of degradation was best described by respiration and the total hydrocarbon concentration in soil. The number of bacterial degraders and heterotrophs as well as quantification of the bioavailable fraction allowed an estimation of how bioremediation would progress. The response of microbial biosensors proved a useful predictor of bioremediation in the absence of other microbial data. Field-scale trials on average took three times as long to reach the same endpoint as the laboratory trial. It is essential that practitioners justify the nature and frequency of sampling when managing remediation projects and estimations can be made using laboratory derived data. The value of bioremediation will be realised when those that practice the technology can offer transparent lines of evidence to explain their decisions. Detailed biological, chemical and physical characterisation reduces uncertainty in predicting bioremediation.