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Considerations on salts used for density separation in the extraction of microplastics from sediments Texte intégral
2021
Cutroneo, Laura | Reboa, Anna | Geneselli, Irene | Capello, Marco
Environmental contamination by plastics and microplastics is a recognised problem worldwide, and it is the focus of many research teams. In the quantification of microplastics in the environment (plastic items with dimensions between 1 μm and 5 mm), the search for shared and universally recognised protocols and methodologies is still ongoing. In this study, the use of a method for extracting microplastics from marine sediments based on density separation has been considered. Fifty studies were analysed to investigate the scenario of salts exploited during microplastic extraction. The most commonly used salts are NaCl (45.6%), ZnCl₂ (19.3%) and NaI (17.5%). Considerations related to cost, availability, hazards of the salts and thus the repeatability of the related extraction method are reported. In light of the findings, NaCl remains the most readily usable, economical and effective salt for the extraction of microplastics from marine sediments.
Afficher plus [+] Moins [-]Sample preparation methods for quantitative detection of DNA by molecular assays and marine biosensors Texte intégral
2013
Cox, Annie M. | Goodwin, Kelly D.
The need for quantitative molecular methods is growing in environmental, food, and medical fields but is hindered by low and variable DNA extraction and by co-extraction of PCR inhibitors. DNA extracts from Enterococcus faecium, seawater, and seawater spiked with E. faecium and Vibrio parahaemolyticus were tested by qPCR for target recovery and inhibition. Conventional and novel methods were tested, including Synchronous Coefficient of Drag Alteration (SCODA) and lysis and purification systems used on an automated genetic sensor (the Environmental Sample Processor, ESP). Variable qPCR target recovery and inhibition were measured, significantly affecting target quantification. An aggressive lysis method that utilized chemical, enzymatic, and mechanical disruption enhanced target recovery compared to commercial kit protocols. SCODA purification did not show marked improvement over commercial spin columns. Overall, data suggested a general need to improve sample preparation and to accurately assess and account for DNA recovery and inhibition in qPCR applications.
Afficher plus [+] Moins [-]The combined use of the PLHC-1 cell line and the recombinant yeast assay to assess the environmental quality of estuarine and coastal sediments Texte intégral
2013
Schnell, Sabine | Olivares, Alba | Piña, Benjamin | Echavarri-Erasun, Beatriz | Lacorte, Silvia | Porte, Cinta
Sediment contamination poses a potential risk for both ecosystems and human health. Risk assessment is troublesome as sediments contain complex mixtures of toxicants, and traditional chemical analyses can neither provide information about potential hazards to organisms nor identify and measure all present contaminants. This work combines the use of the PLHC-1 cell line and the recombinant yeast assay (RYA) to assess the environmental quality of estuarine and coastal sediments. The application of multiple endpoints (cytotoxicity, generation of oxidative stress, presence of CYP1A inducing agents, micronucleus formation and estrogenicity) revealed that the organic extracts of those sediments affected by industrial activities or collected near harbours and untreated urban discharges showed significant cytotoxicity, micronuclei and CYP1A induction. The study highlights the usefulness of the applied bioassays to identify those sediments that could pose risk to aquatic organisms and that require further action to improve their environmental quality.
Afficher plus [+] Moins [-]Recent innovation in microbial source tracking using bacterial real-time PCR markers in shellfish Texte intégral
2013
Mauffret, A. | Mieszkin, S. | Morizur, M. | Alfiansah, Y. | Lozach, S. | Gourmelon, M.
Recent innovation in microbial source tracking using bacterial real-time PCR markers in shellfish Texte intégral
2013
Mauffret, A. | Mieszkin, S. | Morizur, M. | Alfiansah, Y. | Lozach, S. | Gourmelon, M.
We assessed the capacity of real-time PCR markers to identify the origin of contamination in shellfish. Oyster, cockles or clams were either contaminated with fecal materials and host-associated markers designed from Bacteroidales or Catellicoccus marimammalium 16S RNA genes were extracted from their intravalvular liquid, digestive tissues or shellfish flesh. Extraction of bacterial DNA from the oyster intravalvular liquid with FastDNA spin kit for soil enabled the selected markers to be quantified in 100% of artificially contaminated samples, and the source of contamination to be identified in 13 out of 38 naturally contaminated batches from European Class B and Class C areas. However, this protocol did not enable the origin of the contamination to be identified in cockle or clam samples. Although results are promising for extracts from intravalvular liquid in oyster, it is unlikely that a single protocol could be the best across all bacterial markers and types of shellfish.
Afficher plus [+] Moins [-]Contaminants assessment in the coral reefs of Virgin Islands National Park and Virgin Islands Coral Reef National Monument Texte intégral
2013
Bargar, Timothy A. | Garrison, Virginia H. | Alvarez, David A. | Echols, Kathy R.
Coral, fish, plankton, and detritus samples were collected from coral reefs in Virgin Islands National Park (VIIS) and Virgin Islands Coral Reef National Monument (VICR) to assess existing contamination levels. Passive water sampling using polar organic chemical integrative samplers (POCIS) and semi-permeable membrane devices found a few emerging pollutants of concern (DEET and galaxolide) and polynuclear aromatic hydrocarbons. Very little persistent organic chemical contamination was detected in the tissue or detritus samples. Detected contaminants were at concentrations below those reported to be harmful to aquatic organisms. Extracts from the POCIS were subjected to the yeast estrogen screen (YES) to assess potential estrogenicity of the contaminant mixture. Results of the YES (estrogen equivalency of 0.17–0.31ng/L 17-β-estradiol) indicated a low estrogenicity likelihood for contaminants extracted from water. Findings point to low levels of polar and non-polar organic contaminants in the bays sampled within VICR and VIIS.
Afficher plus [+] Moins [-]Heavy metal concentrations in consecutive saturation extracts of dredged sediment derived surface soils
1998
Tack, F.M.G. | Singh, S.P. | Verloo, M.G. (Laboratory for Analytical Chemistry and Applied Ecochemistry, University of Ghent, Coupure Links 653, B-9000 Gent (Belgium))
Combining Passive Sampling with a GC-MS-Database Screening Tool to Assess Trace Organic Contamination of Rivers: a Pilot Study in Melbourne, Australia Texte intégral
2015
This study assessed the suitability of passive sampler extracts for use with a GC-MS-database rapid screening technique for around 940 organic chemicals. Chemcatcher™ passive sampler systems containing either Empore™ SDB-XC or C18FF disks were deployed at 21 riverine sites in and near Melbourne, Victoria, Australia, for a period of 28 days during September–October 2008. Methanolic elution of the SDB-XC and C18FF disks produced an extract that, after evaporation and inversion into hexane, was compatible with the GC-MS-database method enabling over 30 chemicals to be observed. The sources of the non-agricultural chemicals are still unclear, but this study was conducted in a relatively dry season where total rainfall was approximately 40 % lower than the long-term mean for the catchment during the study period. Thus, the risks may be greater in wetter seasons, as greater quantities of chemicals are likely to reach waterways as the frequency, extent and intensity of surface run-off events increase. This study provides valuable information for policy and decision-makers, both in Australia and other regions of the world, in that passive sampling can be conveniently used prior to analysis by multi-residue techniques to produce data to assess the likely risks trace organic chemicals pose to aquatic ecosystems.
Afficher plus [+] Moins [-]Effects of metals on the microbial mineralization of organic acids Texte intégral
1997
BRYNHILDSEN, LENA | Rosswall, T. (Thomas)
The effects of chemical speciation on mineralization of organic compounds was studied using citric acid as a model substance. The degradation of ¹⁴C-labeled Al-, Co-, Cu-, and Zn-citrate was followed in chemically well-defined media inoculated with mixed cultures of microorganisms (soil extracts from two soils). The degradation of citrate was completely inhibited when the acid was bound to Zn, Cu, or Co and partly inhibited when bound to Al. The mineralization of citrate as well as histidine was also followed by incubation of the complexes (Cu, Zn, Al) in the two soils. No effect of metals on the degradation of histidine was seen. The degradation of citrate in soils was also unaffected when complexed to Cu and Zn, whereas Al exerted an inhibited decomposition in both soils.
Afficher plus [+] Moins [-]Speciation of atmospheric polycyclic aromatic hydrocarbons (PAHs) present during fog time collected submicron particles Texte intégral
2015
Singh, Dharmendra Kumar | Sharma, Swati | Habib, Gazala | Gupta, Tarun
Airborne submicron particles (PM₁) were collected using PM₁ sampler during the fog-dominated days (December 2013–January 2014). PM₁ values varied between 58.12 μg/m³ and 198.75 μg/m³, and average mass concentration was 162.33 ± 38.25 μg/m³ while total average concentration of particle-associated polycyclic aromatic hydrocarbon (PAHs) determined was 616.31 ± 30.31 ng/m³. This is a signal for an alarming high pollution level at this site situated in the Indo-Gangetic Plain (IGP). PAHs were extracted from filters using toluene and acetonitrile. Quantitative measurements of polycyclic aromatic hydrocarbons (PAHs) were carried out using the high performance liquid chromatography (HPLC) technique. The extracts were analyzed for 16 target polycyclic aromatic hydrocarbons (PAHs) including carcinogenic compound benzo(a)pyrene (19.86 ± 38.98 ng/m³). Fluoranthene, benzo(a)anthracene, anthracene, and fluorene were the predominant compounds found in the samples collected during foggy days. Based on number of rings, four-ring PAH compounds had maximum contribution (43 %) in this fog time collected submicron particles followed by three-ring (21 %), five-ring (20 %), six-ring (13 %), and two-ring (3 %), respectively. In winter and foggy days, wood and coal combustion and biomass burning also significantly contribute to the PAH levels. However, diagnostic ratio suggests diesel emissions as the prime source of PAHs at this sampling site.
Afficher plus [+] Moins [-]Evaluation of the hazard potentials of river suspended particulate matter and floodplain soils in the Rhine basin using chemical analysis and in vitro bioassays Texte intégral
2015
Schulze, Tobias | Ulrich, Markus | Maier, Dieter | Maier, Matthias | Terytze, Konstantin | Braunbeck, T. (Thomas) | Hollert, Henner
The purpose of the present study was to assess the hazard potentials of contaminated suspended particulate matter (SPM) sampled during a flood event for floodplain soils using in vitro bioassays and chemical analysis. Sediment-contact tests were performed to evaluate the direct exposure of organisms to native soils and SPM at two different trophic levels. For comparison, acetonic extracts were tested using both contact tests and additionally two cell-based biotests for cytotoxicity and Ah receptor-mediated activity (EROD-Assay). The sediment-contact tests were carried out with the dehydrogenase assay with Arthrobacter globiformis and the fish embryo assay with Danio rerio. The results of this study clearly document that native samples may well be significantly more effective than corresponding extracts in the bacteria contact assay or the fish embryo test. These results question the commonly accepted concept that acetonic extracts are likely to overestimate the toxicity of soil and SPM samples. Likewise, the priority organic compounds analyzed failed to fully explain the toxic potential of the samples. The outcomes of this study revealed the insufficient knowledge regarding the relationship between the different exposure pathways. Finally, there is concern about adverse effects by settling suspended particulate matter and remobilized sediments in frequently inundated floodplain soils due to an increase of the hazard potential, if compared with infrequently inundated floodplain soils. We showed that the settling of SPM and sediments revealed a significant impact on the dioxin-like potencies of riparian soils.
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