Nutrient loading is a major threat to estuaries and coastal environments worldwide, therefore, it is critical that we have good monitoring tools to detect early signs of degradation in these ecologically important and vulnerable ecosystems. Traditionally, bottom-dwelling macroinvertebrates have been used for ecological health assessment but recent advances in environmental genomics mean we can now characterize less visible forms of biodiversity, offering a more holistic view of the ecosystem and potentially providing early warning signals of disturbance. We carried out a manipulative nutrient enrichment experiment (0, 150 and 600 g N fertilizer m⁻²) in two estuaries in New Zealand to assess the effects of nutrient loading on benthic communities. After seven months of enrichment, environmental DNA (eDNA) metabarcoding was used to examine the response of eukaryotic (18S rRNA), diatom only (rbcL) and bacterial (16S rRNA) communities. Multivariate analyses demonstrated changes in eukaryotic, diatom and bacterial communities in response to nutrient enrichment at both sites, despite differing environmental conditions. These patterns aligned with changes in macrofaunal communities identified using traditional morphological techniques, confirming concordance between disturbance indicators detected by eDNA and current monitoring approaches. Clear shifts in eukaryotic and bacterial indicator taxa were seen in response to nutrient loading while changes in diatom only communities were more subtle. Community changes were discernible between 0 and 150 g N m⁻² treatments, suggesting that estuary health assessment tools could be developed to detect early signs of degradation. Increasing variation in community structure associated with nutrient loading could also be used as an indicator of stress or approaching tipping points. This work represents a first step towards the development of molecular-based estuary monitoring tools, which could provide a more holistic and standardized approach to ecosystem health assessment with faster turn-around times and lower costs.

The hydro-acoustic noise radiating from underwater tunnels during vehicle passage may be harmful to aquatic fauna, and this is a particular concern for endangered species. Therefore, the effects of underwater noise radiation and propagation on aquatic biodiversity must be investigated. In this study, the dynamic response of the sediment and tunnel structure in the Yangtze River in China was explored by conducting a field test, and the associated noise radiation from the tunnel was recorded and investigated. A three-dimensional numerical model was then developed to simulate the vibration of the tunnel-sediment coupling system induced by random traffic-flow models. Next, a modal acoustic transfer vector-based method was used to predict underwater noise radiation by use of a three-dimensional finite-element acoustic model. Finally, the accuracy of the simulated results was verified by comparison with measurements. The results showed that the noise radiation induced by passing vehicles was approximately 14 dB greater than the background noise, with a main frequency range of 12–25 Hz. The random traffic-flow model had obvious influence of the simulated noise level above 20 Hz. Vehicle-induced underwater noise may thus have a direct effect on fish species that can perceive low-frequency sound pressure. The proposed method can be used for further investigation of methods to reduce the effect of underwater noise on aquatic fauna, especially endangered species.

A microcosm experiment was carried out to study the ecotoxicity and interactions between heavy metals and polyvinyl chloride microplastics. Fifteen treatments were tested and results were examined after one month. In details, this work aims to study the ecotoxicological effects of cadmium (10 and 20 mg kg⁻¹ Dry Weight DW), polyvinyl chloride (PVC) and its modified forms; PVC-DETA (PD) and PVC-TETA (PT) (20 and 40 mg kg⁻¹ DW), separately and in mixtures, on meiofauna from Bizerte lagoon (NE Tunisia) with focus on nematode features. The results obtained showed that individual treatments were toxic for meiofauna and particularly for free-living nematodes. No clear trends characterized the numerical responses but significant reductions were observed for diversity indices. Moreover, the binary combinations of contaminants have a lesser toxic effect compared to their individual effects. This effect could be related to the high-capacity chelating ability of PVC and its polymers against cadmium.

The effects of dike construction on the geomorphology and sedimentary processes of tidal flats were investigated using high-precision topographic profiling, short cores, and unmanned aviation vehicle (UAV)-assisted photogrammetry to understand their adverse consequences on the benthic ecosystem. Tidal flats at the south of Shinsi Island near one of the two sluice gates of the Saemangeum dike, display prominent morphologic features known as shelly sand ridges or cheniers (sensu Otvos, 2000) that have migrated landward about 5 m in a year. The tidal flats were dominated by erosion from winter to spring and by deposition during the remainder of the year except for the periods of heavy precipitation when tidal drainage channels became larger and deeper by headward erosion. With overall coarser-grained surface sediments, the presence of actively migrating wave-built cheniers are in stark contrast to muddy tidal flats with a monotonous morphology before the completion of the Saemangeum dike in 2006. Southeasterly waves reflected from the dike during winter to spring when north to northwesterly winds prevail account for the wave-induced onshore sediment transport and rapid morphologic changes in the tidal flats despite their location protected from offshore waves. The diversity and biomass of major macrofauna species tend to increase during rapid erosion and decrease during rapid deposition, highlighting the anthropogenic effect of dike-induced physical disturbance on the benthic ecosystem in the otherwise sheltered tidal flats.

The use of pesticides has historically helped improve agricultural productivity, although their continued use may have unforeseen effects upon the natural environment when not applied appropriately. Metaldehyde is a commercial pesticide widely used to reduce crop losses resulting from terrestrial mollusc damage. However, following precipitation and runoff it frequently enters waterbodies with largely unknown consequences for aquatic fauna. This study represents one of the first attempts to examine its potential effects on aquatic macroinvertebrate communities at sites known to have experienced elevated metaldehyde concentrations alongside unaffected control sites. In addition, a series of laboratory exposures specifically examined the effects of metaldehyde on the survivorship of non-target aquatic mollusc species. When the entire aquatic macroinvertebrate community and aquatic mollusc community were considered, limited differences were observed between metaldehyde affected and control sites based on field data. Laboratory exposures highlighted that for the molluscs examined, gastropods (Bithynia tentaculata, Planorbis planorbis, Radix balthica and Potamopyrgus antipodarum) had a greater tolerance to metaldehyde than bivalves (Sphaerium corneum and Corbicula fluminea). However, the concentrations required to reduce survivorship of all species were much greater than those ever recorded historically under field conditions. The results suggest that the differences in the community composition recorded between sites exposed to elevated metaldehyde concentrations and control sites were probably due to nutrient loading (N and P from agricultural fertilizers) rather than metaldehyde. However, these results do not negate wider concerns regarding metaldehyde use, particularly issues caused when ingested by vertebrate wildlife, livestock or children and pets in domestic settings.

Metals sequestered in coastal sediments are normally considered to be stable, but this investigation shows – somewhat surprisingly – that mercury concentrations in a previously contaminated area, Harboøre Tange, Denmark, have decreased since the 1980s. Mercury concentrations were determined in sediment and benthic biota and present values were compared to values in the 1980s and values from areas without known; history of mercury contamination. Concentrations in both the upper 20 cm of the sediments and; biota are considerably lower now compared to latest monitoring (1980s). Sediment.concentrations at most locations have decreased from the 100–300 ng Hg g⁻¹ dry weight (dw) level to levels below the Background Concentration (BC) of 50 ng Hg g⁻¹ dw defined by Oslo-Paris Convention for the Protection of the Marine Environment of the North-East Atlantic; some stations are at the 2–10 ng Hg g⁻¹ dw level characteristic of Danish coastal sediments with no known history of mercury contamination. Concentrations of mercury in the benthic biota along Harboøre Tange have also decreased since the 1980s but despite the lowered mercury concentrations in the sediments, concentrations in most samples of benthic invertebrate fauna still exceed those in uncontaminated coastal areas and also the Environmental Quality Standard (EQS) of 20 ng Hg g⁻¹ wet weight (≈100 ng Hg g⁻¹ dry weight) defined by the European Union’s Water Framework Directive. Concentration ranges in selected organisms are: (Harboøre Tange l980s/Harboøre Tange now/uncontaminated areas - given in ng Hg g⁻¹ dw): Periwinkles Littorina littorea 9000/150–450/55-77, blue mussels Mytilus edulis up to 9000/300–500/40–170, cockles Cerastoderma edule up to 8000/400–1200/200, brown shrimp Crangon crangon 700–2200/150-450/47, eelgrass Zostera marina up to 330/25–70/12. The present results - together with a literature review - show that a simple and straight forward relationship between the concentrations of mercury in sediment and benthic organisms does not necessarily exist.

Pollution by plastics is a global problem, in particular through the contamination of aquatic environments and biodiversity. Although plastic contamination is well documented in the aquatic fauna of the oceans and large rivers of the world, there are few data on the organisms of headwater streams, especially in tropical regions. In the present study, we evaluated the contamination of small fish by plastics in Amazonian streams. For this, we evaluated the shape and size, and the abundance of plastics in the gastrointestinal tracts and gills of 14 fish species from 12 streams in eastern Brazilian Amazon. We used a Generalized Linear Mixed Model (GLMM) to compare the levels of contamination among species and between organs. Only one individual of the 68 evaluated (a small catfish Mastiglanis cf. asopos) contained no plastic particles, and no difference was found in the contamination of the gills and digestive tract. However, Hemigrammus unilineatus presented less contamination of both the gills and the digestive tract than the other species, while Polycentrus schomburgkii had less plastic in the gastrointestinal tract, whereas Crenicichla regani and Pimelodella gerii both had a larger quantity of plastic adhered to their gills in comparison with the other species. Nanoplastics and microplastics adhered most to the gills, while plastic fibers were the most common type of material overall. This is the first study to analyze plastic contamination in fish from Amazonian streams, and in addition to revealing high levels of contamination, some species were shown to possibly be more susceptible than others. This reinforces the need for further, more systematic research into the biological and behavioral factors that may contribute to the greater vulnerability of some fish species to contamination by plastics.Amazonian stream fish show contamination by plastics. The species respond differently. The smaller the particle, the easier it is to adhere to the gills.

A laboratory bioassay was conducted to investigate the ecotoxicity of a chromium-enriched superfood, Spirulina platensis, on the meiofauna collected from the Ghar El Melh lagoon, Tunisia. After 1 month of exposure, the abundances of meiobenthic taxa and the taxonomic and morpho-functional diversity of nematodes showed significant differences between the Spirulina and Spirulina + chromium groups. The nematodes were more tolerant of all types of stressors compared to harpacticoids, polychaetes, and oligochaetes, and the lowest taxonomic and morpho-functional diversity of nematodes was observed in the highest sedimentary concentration of S. platensis (50% DW). The mixed treatments may have been richer in micro-habitats and subject to low selective pressure, thereby hosting nematodes with a wide range of adaptations. The responses of the nematode species differed depending on their functional traits. Spirulina enriched with chromium induced two responses for the same feeding group: high toxicity for Daptonema fallax and low toxicity for two Theristus species (T. flevensis and T. modicus). The ecotoxicity of the Spirulina/chromium mixtures were lower than that of Spirulina alone, suggesting mutual neutralization between these two elements. The association between functional traits and taxonomic diversity showed that the effects of the mixtures were not additive and that one of the stressors camouflaged the effect of the other. Our findings should encourage the commercialization of chromium-enriched S. platensis owing to its lower ecotoxicity than Spirulina alone.

Among the seafood used globally, shellfish consumption is in great demand. The utilization of these shellfish such as prawn/shrimp has opened a new market for the utilization of the shellfish wastes. Considering the trends on the production of wealth from wastes, shrimp shell wastes seem an important resource for the generation of high value products when processed on the principles of a biorefinery. In recent years, various chemical strategies have been tried to valorize the shrimp shell wastes, which required harsh chemicals such as HCl and NaOH for demineralization (DM) and deproteination (DP) of the shrimp wastes. Disposal of chemicals by the chitin and chitosan industries into the aquatic bodies pose harm to the aquatic flora and fauna. Thus, there has been intensive efforts to develop safe and sustainable technologies for the management of shrimp shell wastes. This review provides an insight about environmentally-friendly methods along with biological methods to valorize the shrimp waste compared to the strategies employing concentrated chemicals. The main objective of this review article is to explain the utilization shrimp shell wastes in a productive manner such that it would be offer environment and economic sustainability. The application of valorized by-products developed from the shrimp shell wastes and physical methods to improve the pretreatment process of shellfish wastes for valorization are also highlighted in this paper.

Meiofauna particularly marine nematodes around the Caiwei Guyot in the northwest Pacific Ocean and a Polymetallic Nodule Field in the northeast Pacific Ocean were studied. Due to the geographic structure, the Caiwei Guyot and the Polymetallic Nodule Field had different environmental characteristics. Meiofaunal abundances around the Guyot area ranged from 9.18 to 25.59 ind./10 cm², which were much lower than those in the Polymetallic Nodule Field. Marine nematode was the most dominant group. A total of 123 species, belonging to 74 genera and 29 families were found. Xyalidae (21.43%), Cyatholaimidae (9.82%), Linhomoeidae (8.03%) were the dominant families. The values of species number, Margalef's species richness and Shannon-Wiener diversity index ranged from 15 to 62, 4.75 to 12.84 and 2.58 to 3.93, respectively. The combination of water depth, silt-clay content and chlorophyll-a concentration can best explain the differences of nematode community. This study provides a baseline for deep-sea meiofauna distribution.