Genome resources have advantages for understanding diverse areas such as biological patterns and functioning of organisms. Omics platforms are useful approaches for the study of organs and organisms. These approaches can be powerful screening tools for whole genome, proteome, and metabolome profiling, and can be used to understand molecular changes in response to internal and external stimuli. This methodology has been applied successfully in freshwater model fish such as the zebrafish Danio rerio and the Japanese medaka Oryzias latipes in research areas such as basic physiology, developmental biology, genetics, and environmental biology. However, information is still scarce about model fish that inhabit brackish water or seawater. To develop the self-fertilizing killifish Kryptolebias marmoratus as a potential model species with unique characteristics and research merits, we obtained genomic information about K. marmoratus. We address ways to use these data for genome-based molecular mechanistic studies. We review the current state of genome information on K. marmoratus to initiate omics approaches. We evaluate the potential applications of integrated omics platforms for future studies in environmental science, developmental biology, and biomedical research. We conclude that information about the K. marmoratus genome will provide a better understanding of the molecular functions of genes, proteins, and metabolites that are involved in the biological functions of this species. Omics platforms, particularly combined technologies that make effective use of bioinformatics, will provide powerful tools for hypothesis-driven investigations and discovery-driven discussions on diverse aspects of this species and on fish and vertebrates in general.

In this study, 75 samples of two 210Pb-dated cores from the southwest of the Caspian Sea were analysed for 30 compounds of polycyclic aromatic hydrocarbons (PAHs). The TPAH29 flux of the last six centuries ranged from 16.3 to 177.3 and 22.3 to 426.2ngcm−2y−1 in the Rezvanshahr and Anzali core sediments, respectively. Prior to 1840, four distinct maxima in PAH fluxes (61–426.2ngcm−2y−1) with a low weathered petrogenic pattern were found in each of the core sediments. Simultaneity of distinct peaks of PAH fluxes before 1840 and Caspian Sea level high-stands during the Little Ice Age (LIA), revealed the high importance of this phenomenon in washing and transport of land-based oil pollution into the Caspian Sea. An overall increase in some diagnostic ratios (Flu/202, IP/276 and BaA/228), especially after 1940, indicated increase of pyrogenic PAHs as a result of industrial development in the catchment area.

Among marine debris, monofilament fishing lines often result in negative impacts on marine organisms. We characterized marine debris and incidence of lost and discarded monofilament lines along beaches used by recreational fishers, and report the impact of lines on Kelp Gulls (Larus dominicanus) at the Bahía San Blas protected area, site of one of the main shore-based recreational fisheries of the southwestern Atlantic. Over 55% of the marine debris recorded originated from recreational fishing activities. Balls of tangled monofilament lines were found at a rate of 40.5 items per km. A total of 27 adult Kelp Gulls were found entangled with monofilament. All individuals were tangled to vegetation within colony boundaries. Four of the gulls had a monofilament line protruding from the bill, showing that they may be also killed when trying to obtain bait. Our results indicate that lost or discarded monofilament lines in the Bahía San Blas recreational fishing area result in undesired impacts on coastal wildlife.

The sensitivity of copepods to ocean acidification (OA) and warming may increase with time, however, studies >10days and on synergistic effects are rare. We therefore incubated late copepodites and females of two dominant Arctic species, Calanus glacialis and Calanushyperboreus, at 0°C at 390 and 3000μatm pCO2 for several months in fall/winter 2010. Respiration rates, body mass and mortality in both species and life stages did not change with pCO2. To detect synergistic effects, in 2011 C. hyperboreus females were kept at different pCO2 and temperatures (0, 5, 10°C). Incubation at 10°C induced sublethal stress, which might have overruled effects of pCO2. At 5°C and 3000μatm, body carbon was significantly lowest indicating a synergistic effect. The copepods, thus, can tolerate pCO2 predicted for a future ocean, but in combination with increasing temperatures they could be sensitive to OA.

In the present work, abundance, spatial distribution and qualitative composition, of benthic marine litter, were investigated in five study areas from the Eastern Mediterranean and Black Seas (Saronikos, Patras and Echinades Gulfs; Limassol Gulf; Constanta Bay). Surveys were performed using the monitoring protocol proposed by the Technical Group for Marine Litter. Densities ranged from 24items/km2 to 1211items/km2, with the Saronikos Gulf being the most affected area. Plastics were predominant in all study areas ranging from 45.2% to 95%. Metals and Glass/Ceramics reached maximum values of 21.9% and of 22.4%. The size distribution of litter items showed that ⩾50% fall into medium size categories (10×10cm, 20×20cm) along with an elevated percentage of small-sized (<5×5cm) plastic litter items. The comparative analysis of the data highlighted the dependence of the marine litter problem on many local factors (human sources and oceanographic conditions) and the urgent need for specific actions.

Surface sediments were collected from sixteen locations in order to assess levels and sources of polycyclic aromatic hydrocarbons (PAHs) in sediments of Qatar exclusive economic zone (EEZ). Samples were analyzed for 16 parent PAHs, 18 alkyl homologs and for dibenzothiophenes. Total PAHs concentration (∑PAHs) ranged from 2.6ngg−1 to 1025ngg−1. The highest PAHs concentrations were in sediments in and adjacent to harbors. Alkylated PAHs predominated most of the sampling locations reaching up to 80% in offshore locations. Parent PAHs and parent high molecular weight PAHs dominated location adjacent to industrial activities and urban areas. The origin of PAHs sources to the sediments was elucidated using ternary plot, indices, and molecular ratios of specific compounds such as (Ant/Phe+Ant), (Flt/Flt+Pyr). PAHs inputs to most coastal sites consisted of mixture of petroleum and combustion derived sources. However, inputs to the offshore sediments were mainly of petroleum origin.

Life Cycle Assessment (LCA) has been introduced in the evaluation of chemical processes and or products in order to take into account the Supply Chain and its environmental constraints and burdens. Regarding to the environmental assessment of chemical processes and/or products two main variables need to be taken into account: Natural Resources Sustainability (NRS) and Environmental Burdens Sustainability (EBS). NRS includes the use of energy, water and materials whereas EBS is given by the environmental sustainability metrics developed by the Institution of Chemical Engineers (IChemE). The main components of EBS have been classified in 5 environmental impacts to the atmosphere (acidification, global warming, human health effects, stratospheric ozone depletion and photochemical ozone formation), 5 aquatic media impacts (aquatic acidification, aquatic oxygen demand, ecotoxicity (metals), ecotoxicity (others) and eutrophication) and 2 land impacts (hazardous and non-hazardous waste disposal). To reduce the number of variables and thus, the complexity, the development of a normalisation and weighting procedure is required. This work proposes the normalization of EB based on the threshold values of the European Pollutant Release and Transfer Register (E-PRTR) and a similar procedure based on the values given by the BREF document on waste incineration for the NRS normalisation. This procedure will help in the decision making process in the waste management field and in the particular, in Municipal Solid Waste Incineration (MSWI).

The aim of this work is to develop an integrated process for the sustainable management of reverse osmosis brines generated in desalination plants. The core of the proposed process is the bipolar membrane electrodialysis (BMED), which has proved to be a technically feasible option for the conversion of RO desalination brines into HCl and NaOH. However, the overall process should also integrate the brine purification treatment. Precipitation with NaOH, using the reactant produced in BMED, would be the most suitable option for hardness removal. On the other hand, the presence of sulphate affects negatively the quality of the hydrochloric acid product and the current efficiency of BMED. Therefore, in this work nanofiltration (NF) has been applied in order to retain sulphate. This work reports the mathematical model that describes the transport of binary aqueous solutions of chloride and sulphate anions through the NF270 nanofiltration membrane. The relevance and the difficulty of the task lie on the high concentrations of both anions, as it occurs in the RO brines generated in the desalination of brackish water, and the variety of valence charge of the species, monovalent chloride and divalent sulphate, that introduces significant differences in the interaction of both anions with the charged membrane surface. | This work has been financially supported by projects CTQ2008-0690, ENE2010-15585 and CTM2011-23912 (co-financed by ERDF Funds).