Microorganisms degrading phenolic compounds play an important role in soil carbon cycling. The pcaH gene encoding a key ring-cleaving enzyme of the β -ketoadipate pathway was selected as a functional marker. Using a degenerate primer pair, pcaH fragments were cloned from two soils. The RFLP screening of 150 pcaH clones yielded 68 RFLP families. Comparison of 86 deduced amino acid sequences displayed 70 % identity to known PcaH sequences. Phylogenetic analysis results in two major groups mainly related to PcaH sequences from Actinobacteria and Proteobacteria phyla. This gene constitutes a suitable molecular marker to study the diversity of this functional group.

International audience | Microorganisms degrading phenolic compounds play an important role in soil carbon cycling. The pcaH gene encoding a key ring-cleaving enzyme of the β -ketoadipate pathway was selected as a functional marker. Using a degenerate primer pair, pcaH fragments were cloned from two soils. The RFLP screening of 150 pcaH clones yielded 68 RFLP families. Comparison of 86 deduced amino acid sequences displayed 70 % identity to known PcaH sequences. Phylogenetic analysis results in two major groups mainly related to PcaH sequences from Actinobacteria and Proteobacteria phyla. This gene constitutes a suitable molecular marker to study the diversity of this functional group.

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Experiments were conducted in an annular flume using waste bed sediment from a discontinued aquaculture operation to assess its stability against erosion. Critical shear stress for erosion was measured under different flow conditions and after three different consolidation periods (2, 7 and 14 days). The influence of biostabilization was also assessed as a mechanism for controlling the bed sediment stability. Results suggest a moderate increase in bed sediment strength with time as evidenced by the increasing critical bed shear stress for erosion with increasing consolidation times. Critical bed shear stress for erosion ranged from 0.06 to 0.1 Pa. Eroded floc size and settling velocities were in the range that would allow for significant horizontal transport of sediments provided a flow was present (i.e. transport outside of the aquaculture pens). The increase in sediment strength with time is believed to be more strongly influenced by biofilm integration on and within the surface sediment layer than to consolidation and dewatering effects. Extensive biofilm growth was visibly evident and microscopy confirmed the presence of extensive filamentous organisms (likely of a fungal origin) and bacteria. The point of failure of this biostabilized sediment was significantly lower than that reported for other natural freshwater and salt water sediments. Regardless of the sediment type, however, biostabilization is a consistent and important mechanism which controls the stability of sediments. Factors such as the microbial community and sediment floc structure will need to be considered in order to improve our understanding of the mechanisms of bed sediment stability and erosion for the environmentally sustainable operations of aquaculture facilities.

Over 70 wood chemical plants operated in northern Pennsylvania between ca. 1890 and 1950, all located within 72 km of the New York state border. Their original purpose was to salvage the small unwanted hardwood trees left behind by the lumber mills, and to make charcoal, calcium acetate and methanol for a number of industrial uses via destructive distillation. At many old wood chemical plant sites, unknown quantities of wood tar remain as a residual contaminant and pose a pollution threat to aquatic life in nearby streams. Research on the composition and properties of residual wood tars from five abandoned industrial sites in Pennsylvania are described. Weathered wood tars were more viscous and contained fewer volatile and semivolatile organic compounds than did soil-buried tars. Phenol, 2-methylphenol (o-cresol), 4-methylphenol (p-cresol), and 2, 4-dimethylphenol were found in all sampled tars. These water-soluble phenolic compounds were released quasi-instantaneously in aqueous solution, followed by a slower rate of release, consistent with the behavior of similar compounds in other dense non-aqueous liquids. Air-exposed wood tar deposits developed a hard crust, which contained fewer volatiles and semivolatiles and had a higher softening point than other samples. These tars eroded to form a powdered soil colonized by lichens and mosses. Residual wood tar material found at one site was shown to be thermally altered, likely during the historical destruction of the chemical plant by fire. Recovered wood tar wastes have a relatively high heating value and may have use as a potential, but limited, alternate energy source.

The aim of this study was to evaluate the suitability of the (Ca + Mg + K)/Al and the Ca/Al ratios in soil solution as chemical criteria for forest condition in critical load calculations for forest ecosystems. The tree species Norway spruce, Sitka spruce and beech were studied in an area with high deposition of sea salt and nitrogen in the south-western part of Jutland, Denmark. Throughfall and soil water were collected monthly and analysed for pH, NO₃-N, NH₄-N, K, Ca, Mg, DOC and Altot. Organic Al was estimated using DOC concentrations. Increment and defoliation were determined annually, and foliar element concentrations were determined every other year. The throughfall deposition was highest in the Sitka spruce stand (maximum of 40 kg N ha-¹yr-¹) and lowest in the beech stand (maximum of 11 kg N ha-¹yr-¹). The Sitka spruce stand leached on average 12 kg N ha-¹yr-¹ during the period 1988-1997 and leaching increased throughout the period. Only small amounts of N were leached from the Norway spruce stand whereas almost no N was leached from the beech stand. For all tree species, both (Ca + Mg + K)/Al and Ca/Al ratios decreased in soil solution at 90 cm depth between 1989 and 1999, which was mainly caused by a decrease in concentrations of base cations. The toxic inorganic Al species were by far the most abundant Al species at 90 cm depth. At the end of the measurement period, the (Ca + Mg + K)/Al ratio was approximately 1 for all species while the Ca/Al ratio was approximately 0.2. The lack of a trend in the increment rates, a decrease in defoliation as well as sufficient levels of Mg and Ca in foliage suggested an unchanged or even slightly improved health condition, despite the decreasing and very low (Ca + Mg + K)/Al and Ca/Al ratios. The suitability of these soil solution element ratios is questioned as the chemical criteria for soil acidification under field conditions in areas with elevated deposition rates of sea salts, in particular Mg.

Agricultural soils high in both fluoride (F) and phosphate (P) are common due to long-term accumulation of F from multi-sources and extensive application of phosphate fertilizers. Iron (Fe) and aluminum (Al) (hydro)oxides in acidic soils serve as main geochemical sinks of both P and F, influencing their transport and bioavailability. Though sorption of P and F in their single-ion system has been extensively investigated, studies on co-sorption of F and P on soils are very limited. In this study, the batch technique was used to investigate mutual effects of F and P on their co-sorption/desorption in an acidic red soil with high contents of Fe and Al (hydro)oxides. Results indicate that, in F-P coexisting system, a decrease in pH enhances the sorption of both F and P. An increase in F concentration suppresses P sorption due to competitive effect. However, F sorption can be improved in the presence of P due to surface precipitation of (Al,Fe)-F-P. Sorption of F and P follows both the Langmuir and Freundlich isotherms. Different orders of F and P addition into the soil have no appreciable effect on P sorption, but exert significant impact on F sorption. The presence of F has no measurable effect on P desorption, while the stability of F in the presence of P can be significantly diminished in comparison with that in the absence of P, which would lead to an improvement of F mobility.

Multi-block (heavy metals, pesticides, physico-chemical parameters) data set pertaining to the soils of alluvium region in Indo-Gangetic plains was analyzed using principal component analysis (PCA) and multiple factor analysis (MFA) methods to delineate the contaminated sites and to identify the possible contamination sources in the study region. In normal PCA, the first three factors were dominated mainly by heavy metals, pesticides and physico-chemical variables, respectively, thus identifying samples/sites contaminated with these. The MFA results, due to its unique weighting scheme of variables of different blocks extracted, to more realistic information about the spatial distribution of samples and relationships among the variables. MFA minimized the influence of variables of one single block on the first few components, allowing variables of all blocks equally to share the common MFA space. This resulted in delineating the sites/regions contaminated with variables (Al, Co, Cu, Mn, Ni, Pb, V, Na, SO₄, aldrin, lindane, HCB, HCH, DDT, and endosulfan) of all the blocks, rather than by particular block variables as in case of normal PCA, where, the variables of single block dominate the first factors, suppressing other block variables. MFA which can be considered as a method for standardization of the multi-block variables was successfully applied to the three block data set of soils.